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Markus W. Covert
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2020 – today
- 2023
- [j11]Christopher J. Skalnik
, Sean Y. Cheah
Whole-cell modeling of E. coli colonies enables quantification of single-cell heterogeneity in antibiotic responses. PLoS Comput. Biol. 19(6) (2023) - 2022
- [j10]Eran Agmon
Vivarium: an interface and engine for integrative multiscale modeling in computational biology. Bioinform. 38(7): 1972-1979 (2022)
2010 – 2019
- 2016
- [j9]David A. Van Valen, Takamasa Kudo
Deep Learning Automates the Quantitative Analysis of Individual Cells in Live-Cell Imaging Experiments. PLoS Comput. Biol. 12(11) (2016) - 2015
- [j8]Jonathan R. Karr
NetworkPainter: dynamic intracellular pathway animation in Cytobank. BMC Bioinform. 16: 172:1-172:7 (2015) - [j7]Jonathan R. Karr
Summary of the DREAM8 Parameter Estimation Challenge: Toward Parameter Identification for Whole-Cell Models. PLoS Comput. Biol. 11(5) (2015) - 2014
- [j6]Jonathan R. Karr
WholeCellSimDB: a hybrid relational/HDF database for whole-cell model predictions. Database J. Biol. Databases Curation 2014 (2014) - 2013
- [j5]Ruby Lee, Jonathan R. Karr
WholeCellViz: data visualization for whole-cell models. BMC Bioinform. 14: 253 (2013) - [j4]Jonathan R. Karr
WholeCellKB: model organism databases for comprehensive whole-cell models. Nucleic Acids Res. 41(Database-Issue): 787-792 (2013) - 2012
- [j3]Elsa W. Birch, Nicholas A. Ruggero, Markus W. Covert
Determining Host Metabolic Limitations on Viral Replication via Integrated Modeling and Experimental Perturbation. PLoS Comput. Biol. 8(10) (2012)
2000 – 2009
- 2009
- [j2]Junhee Seok, Wenzhong Xiao
A dynamic network of transcription in LPS-treated human subjects. BMC Syst. Biol. 3: 78 (2009) - 2008
- [j1]Markus W. Covert
Integrating metabolic, transcriptional regulatory and signal transduction models in Escherichia coli. Bioinform. 24(18): 2044-2050 (2008)
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