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Jorge González-Domínguez
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2020 – today
- 2024
- [j41]Roberto R. Expósito
, Jorge González-Domínguez
BigDEC: A multi-algorithm Big Data tool based on the k-mer spectrum method for scalable short-read error correction. Future Gener. Comput. Syst. 154: 314-329 (2024) - [j40]Bieito Beceiro
CUDA acceleration of MI-based feature selection methods. J. Parallel Distributed Comput. 190: 104901 (2024) - [j39]Aurelio López-Fernández
bioScience: A new python science library for high-performance computing bioinformatics analytics. SoftwareX 26: 101666 (2024) - [j38]Alejandro Fernández-Fraga
PARamrfinder: detecting allele-specific DNA methylation on multicore clusters. J. Supercomput. 80(10): 14573-14599 (2024) - [c18]Alejandro Fernández-Fraga
Applying dynamic balancing to improve the performance of MPI parallel genomics applications. SAC 2024: 506-514 - 2023
- [j37]Iñaki Amatria-Barral
PATO: genome-wide prediction of lncRNA-DNA triple helices. Bioinform. 39(3) (2023) - [j36]Iñaki Amatria-Barral
pRIblast: A highly efficient parallel application for comprehensive lncRNA-RNA interaction prediction. Future Gener. Comput. Syst. 138: 270-279 (2023) - [j35]Alejandro Fernández-Fraga
ParRADMeth: Identification of Differentially Methylated Regions on Multicore Clusters. IEEE ACM Trans. Comput. Biol. Bioinform. 20(3): 2041-2049 (2023) - [c17]Iñaki Amatria-Barral
Parallel construction of RNA databases for extensive lncRNA-RNA interaction prediction. SAC 2023: 555-558 - 2022
- [j34]Borja González-Seoane
PyToxo: a Python tool for calculating penetrance tables of high-order epistasis models. BMC Bioinform. 23(1): 117 (2022) - [j33]Christian Ponte-Fernández
A SIMD algorithm for the detection of epistatic interactions of any order. Future Gener. Comput. Syst. 132: 108-123 (2022) - [j32]Bieito Beceiro
Parallel-FST: A feature selection library for multicore clusters. J. Parallel Distributed Comput. 169: 106-116 (2022) - [j31]Christian Ponte-Fernández
Evaluation of Existing Methods for High-Order Epistasis Detection. IEEE ACM Trans. Comput. Biol. Bioinform. 19(2): 912-926 (2022) - [j30]Jorge González-Domínguez
MPI-dot2dot: A parallel tool to find DNA tandem repeats on multicore clusters. J. Supercomput. 78(3): 4217-4235 (2022) - [j29]Christian Ponte-Fernández
Fiuncho: a program for any-order epistasis detection in CPU clusters. J. Supercomput. 78(13): 15338-15357 (2022) - [c16]Borja González-Seoane
Generating penetrance tables of high-order epistasis models with PyToxo. XoveTIC 2022: 46-49 - [i3]Christian Ponte-Fernández, Jorge González-Domínguez, María J. Martín:
A SIMD algorithm for the detection of epistatic interactions of any order. CoRR abs/2201.02460 (2022) - [i2]Christian Ponte-Fernández, Jorge González-Domínguez, María J. Martín:
Fiuncho: a program for any-order epistasis detection in CPU clusters. CoRR abs/2201.03331 (2022) - 2021
- [j28]Basilio B. Fraguela
ScalaParBiBit: scaling the binary biclustering in distributed-memory systems. Clust. Comput. 24(3): 2249-2268 (2021) - 2020
- [j27]Roberto R. Expósito
SeQual: Big Data Tool to Perform Quality Control and Data Preprocessing of Large NGS Datasets. IEEE Access 8: 146075-146084 (2020) - [j26]Christian Ponte-Fernández
Toxo: a library for calculating penetrance tables of high-order epistasis models. BMC Bioinform. 21(1): 138 (2020) - [j25]Jorge González-Domínguez, Roberto R. Expósito
CUDA-JMI: Acceleration of feature selection on heterogeneous systems. Future Gener. Comput. Syst. 102: 426-436 (2020) - [j24]Roberto R. Expósito
SMusket: Spark-based DNA error correction on distributed-memory systems. Future Gener. Comput. Syst. 111: 698-713 (2020) - [j23]Christian Ponte-Fernández
Fast search of third-order epistatic interactions on CPU and GPU clusters. Int. J. High Perform. Comput. Appl. 34(1) (2020)
2010 – 2019
- 2019
- [j22]Jorge González-Domínguez
Accelerating binary biclustering on platforms with CUDA-enabled GPUs. Inf. Sci. 496: 317-325 (2019) - [j21]Jorge González-Domínguez
Parallel feature selection for distributed-memory clusters. Inf. Sci. 496: 399-409 (2019) - [c15]Uxía Casal, Jorge González-Domínguez, María J. Martín
Analysis of the Construction of Similarity Matrices on Multi-core and Many-Core Platforms Using Different Similarity Metrics. ICCS (1) 2019: 168-181 - 2018
- [j20]Jorge González-Domínguez
parSRA: A framework for the parallel execution of short read aligners on compute clusters. J. Comput. Sci. 25: 134-139 (2018) - [j19]Jorge González-Domínguez
MPIGeneNet: Parallel Calculation of Gene Co-Expression Networks on Multicore Clusters. IEEE ACM Trans. Comput. Biol. Bioinform. 15(5): 1732-1737 (2018) - 2017
- [j18]Roberto R. Expósito
MarDRe: efficient MapReduce-based removal of duplicate DNA reads in the cloud. Bioinform. 33(17): 2762-2764 (2017) - [j17]Daniel Jünger, Christian Hundt, Jorge González-Domínguez
Speed and accuracy improvement of higher-order epistasis detection on CUDA-enabled GPUs. Clust. Comput. 20(3): 1899-1908 (2017) - [j16]Jorge González-Domínguez
Parallel definition of tear film maps on distributed-memory clusters for the support of dry eye diagnosis. Comput. Methods Programs Biomed. 139: 51-60 (2017) - [c14]Jorge González-Domínguez, María J. Martín
Fast Parallel Construction of Correlation Similarity Matrices for Gene Co-Expression Networks on Multicore Clusters. ICCS 2017: 485-494 - [c13]Christian Ponte-Fernández
Evaluation of OpenMP SIMD Directives on Xeon Phi Coprocessors. HPCS 2017: 389-395 - 2016
- [j15]Jorge González-Domínguez
ParDRe: faster parallel duplicated reads removal tool for sequencing studies. Bioinform. 32(10): 1562-1564 (2016) - [j14]Jorge González-Domínguez
MSAProbs-MPI: parallel multiple sequence aligner for distributed-memory systems. Bioinform. 32(24): 3826-3828 (2016) - [j13]Carlos Eiras-Franco
Multithreaded and Spark parallelization of feature selection filters. J. Comput. Sci. 17: 609-619 (2016) - [j12]Jorge González-Domínguez
Parallel Pairwise Epistasis Detection on Heterogeneous Computing Architectures. IEEE Trans. Parallel Distributed Syst. 27(8): 2329-2340 (2016) - [c12]Jan Christian Kässens
Combining GPU and FPGA technology for efficient exhaustive interaction analysis in GWAS. ASAP 2016: 170-175 - [c11]Daniel Jünger
Ultra-Fast Detection of Higher-Order Epistatic Interactions on GPUs. Euro-Par Workshops 2016: 421-432 - [c10]Jorge González-Domínguez
Acceleration of Tear Film Map Definition on Multicore Systems. ICCS 2016: 41-51 - 2015
- [j11]Jorge González-Domínguez
Large-scale genome-wide association studies on a GPU cluster using a CUDA-accelerated PGAS programming model. Int. J. High Perform. Comput. Appl. 29(4): 506-510 (2015) - [j10]Jorge González-Domínguez
GPU-accelerated exhaustive search for third-order epistatic interactions in case-control studies. J. Comput. Sci. 8: 93-100 (2015) - [j9]Jan Christian Kässens
High-speed exhaustive 3-locus interaction epistasis analysis on FPGAs. J. Comput. Sci. 9: 131-136 (2015) - [j8]Jorge González-Domínguez
Parallelizing Epistasis Detection in GWAS on FPGA and GPU-Accelerated Computing Systems. IEEE ACM Trans. Comput. Biol. Bioinform. 12(5): 982-994 (2015) - 2014
- [j7]Damián A. Mallón, Guillermo L. Taboada
Scalable PGAS collective operations in NUMA clusters. Clust. Comput. 17(4): 1473-1495 (2014) - [j6]Jorge González-Domínguez
A 2D algorithm with asymmetric workload for the UPC conjugate gradient method. J. Supercomput. 70(2): 816-829 (2014) - [c9]Jan Christian Kässens
UPC++ for bioinformatics: A case study using genome-wide association studies. CLUSTER 2014: 248-256 - [c8]Jorge González-Domínguez
Hybrid CPU/GPU Acceleration of Detection of 2-SNP Epistatic Interactions in GWAS. Euro-Par 2014: 680-691 - [c7]Lars Wienbrandt
FPGA-based Acceleration of Detecting Statistical Epistasis in GWAS. ICCS 2014: 220-230 - [c6]Sandra Catalán
Analyzing the Energy Efficiency of the Memory Subsystem in Multicore Processors. ISPA 2014: 10-17 - [i1]Jorge González-Domínguez, Evangelos Georganas, Yili Zheng, María J. Martín:
Constructing Performance Models for Dense Linear Algebra Algorithms on Cray XE Systems. CoRR abs/1402.1285 (2014) - 2013
- [j5]Jorge González-Domínguez
The Servet 3.0 benchmark suite: Characterization of network performance degradation. Comput. Electr. Eng. 39(8): 2483-2493 (2013) - [j4]Roberto R. Expósito
Analysis of I/O Performance on an Amazon EC2 Cluster Compute and High I/O Platform. J. Grid Comput. 11(4): 613-631 (2013) - [j3]Jorge González-Domínguez
Performance evaluation of sparse matrix products in UPC. J. Supercomput. 64(1): 100-109 (2013) - 2012
- [j2]Jorge González-Domínguez
Automatic mapping of parallel applications on multicore architectures using the Servet benchmark suite. Comput. Electr. Eng. 38(2): 258-269 (2012) - [j1]Jorge González-Domínguez
UPCBLAS: a library for parallel matrix computations in Unified Parallel C. Concurr. Comput. Pract. Exp. 24(14): 1645-1667 (2012) - [c5]Jorge González-Domínguez
Design and Performance Issues of Cholesky and LU Solvers Using UPCBLAS. ISPA 2012: 40-47 - [c4]Evangelos Georganas, Jorge González-Domínguez
Communication avoiding and overlapping for numerical linear algebra. SC 2012: 100 - 2011
- [c3]Jorge González-Domínguez
Dense Triangular Solvers on Multicore Clusters using UPC. ICCS 2011: 231-240 - 2010
- [c2]Jorge González-Domínguez
Servet: A benchmark suite for autotuning on multicore clusters. IPDPS 2010: 1-9
2000 – 2009
- 2009
- [c1]Jorge González-Domínguez
A Parallel Numerical Library for UPC. Euro-Par 2009: 630-641
Coauthor Index
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last updated on 2024-10-07 21:21 CEST by the dblp team
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