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Dong-Yup Lee

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2010 – 2019

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2018
[j17]
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  - journals/bmcsb/MishraLLKKL18
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Pranjul Mishra, Na-Rae Lee, Meiyappan Lakshmanan, Minsuk Kim, Byung-Gee Kim, Dong-Yup Lee:
Genome-scale model-driven strain design for dicarboxylic acid production in Yarrowia lipolytica. BMC Syst. Biol. 12(S-2): 9-20 (2018)
2017
[j16]
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Minsuk Kim, Gwanggyu Sun, Dong-Yup Lee, Byung-Gee Kim:
BeReTa: a systematic method for identifying target transcriptional regulators to enhance microbial production of chemicals. Bioinform. 33(1): 87-94 (2017)
2015
[j15]
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Chengcheng Liu, Ju Xin Chin, Dong-Yup Lee:
SynLinker: an integrated system for designing linkers and synthetic fusion proteins. Bioinform. 31(22): 3700-3702 (2015)
[j14]
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Meiyappan Lakshmanan, Tae Yong Kim, Bevan Kai-Sheng Chung, Sang Yup Lee, Dong-Yup Lee:
Flux-sum analysis identifies metabolite targets for strain improvement. BMC Syst. Biol. 9: 73 (2015)
2014
[j13]
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Meiyappan Lakshmanan, Geoffrey Koh, Bevan Chung, Dong-Yup Lee:
Software applications for flux balance analysis. Briefings Bioinform. 15(1): 108-122 (2014)
[j12]
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Ju Xin Chin, Bevan Kai-Sheng Chung, Dong-Yup Lee:
Codon Optimization OnLine (COOL): a web-based multi-objective optimization platform for synthetic gene design. Bioinform. 30(15): 2210-2212 (2014)
2013
[j11]
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Meiyappan Lakshmanan, Bevan Kai-Sheng Chung, Chengcheng Liu, Seon-Won Kim, Dong-Yup Lee:
Cofactor Modification Analysis: a Computational Framework to Identify cofactor specificity Engineering targets for strain Improvement. J. Bioinform. Comput. Biol. 11(6) (2013)
2012
[j10]
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  - journals/bmcsb/ChungL12
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Bevan Chung, Dong-Yup Lee:
Computational codon optimization of synthetic gene for protein expression. BMC Syst. Biol. 6: 134 (2012)
2011
[j9]
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Geoffrey Koh, Ariana Low, Daren Poh, Yujian Yao, Say Ng, Victor Wong, Vincent Vagenende, Kong-Peng Lam, Dong-Yup Lee:
Integrative analysis workflow for the structural and functional classification of C-type lectins. BMC Bioinform. 12(S-14): S5 (2011)
[j8]
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Geoffrey Koh, Dong-Yup Lee:
Mathematical modeling and sensitivity analysis of the integrated TNFα-mediated apoptotic pathway for identifying key regulators. Comput. Biol. Medicine 41(7): 512-528 (2011)

2000 – 2009

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2009
[j7]
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Dong-Yup Lee, Rajib Saha, Faraaz Noor Khan Yusufi, Wonjun Park, Iftekhar A. Karimi:
Web-based applications for building, managing and analysing kinetic models of biological systems. Briefings Bioinform. 10(1): 65-74 (2009)
[j6]
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  - journals/bioinformatics/JungYRCL09
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Tae-Sung Jung, Hock Chuan Yeo, Satty G. Reddy, Wan-Sup Cho, Dong-Yup Lee:
WEbcoli: an interactive and asynchronous web application for in silico design and analysis of genome-scale E.coli model. Bioinform. 25(21): 2850-2852 (2009)
[j5]
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Bevan Chung, Dong-Yup Lee:
Flux-sum analysis: a metabolite-centric approach for understanding the metabolic network. BMC Syst. Biol. 3: 117 (2009)
2006
[j4]
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  - journals/bioinformatics/LeeYCHPL06
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Dong-Yup Lee, Choamun Yun, Ayoun Cho, Bo Kyeng Hou, Sunwon Park, Sang Yup Lee:
WebCell: a web-based environment for kinetic modeling and dynamic simulation of cellular networks. Bioinform. 22(9): 1150-1151 (2006)
2005
[j3]
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  - journals/bioinformatics/YunLJLL05
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Hongseok Yun, Dong-Yup Lee, Joonwoo Jeong, Seunghyun Lee, Sang Yup Lee:
MFAML: a standard data structure for representing and exchanging metabolic flux models. Bioinform. 21(15): 3329-3330 (2005)
2004
[j2]
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  - journals/bioinformatics/HouKJLKCRIL04
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Bo Kyeng Hou, Jin Sik Kim, Ji Hoon Jun, Dong-Yup Lee, Yong Wook Kim, Sujin Chae, Mira Roh, Yong-Ho In, Sang Yup Lee:
BioSilico: an integrated metabolic database system. Bioinform. 20(17): 3270-3272 (2004)
2003
[j1]
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Dong-Yup Lee, Hongseok Yun, Sunwon Park, Sang Yup Lee:
MetaFluxNet: the management of metabolic reaction information and quantitative metabolic flux analysis. Bioinform. 19(16): 2144-2146 (2003)

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