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Stefan Kurtz
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2020 – today
- 2021
- [j34]Fabian Hausmann
, Stefan Kurtz
DeepGRP: engineering a software tool for predicting genomic repetitive elements using Recurrent Neural Networks with attention. Algorithms Mol. Biol. 16(1): 20 (2021)
2010 – 2019
- 2019
- [j33]Giorgio Gonnella
GfaViz: flexible and interactive visualization of GFA sequence graphs. Bioinform. 35(16): 2853-2855 (2019) - 2017
- [j32]Giorgio Gonnella
GfaPy: a flexible and extensible software library for handling sequence graphs in Python. Bioinform. 33(19): 3094-3095 (2017) - 2014
- [j31]Malte Mader
FISH Oracle 2: a web server for integrative visualization of genomic data in cancer research. J. Clin. Bioinform. 4: 5 (2014) - 2013
- [j30]Fernando Meyer
Fast online and index-based algorithms for approximate search of RNA sequence-structure patterns. BMC Bioinform. 14: 226 (2013) - [j29]Gordon Gremme, Sascha Steinbiss
GenomeTools: A Comprehensive Software Library for Efficient Processing of Structured Genome Annotations. IEEE ACM Trans. Comput. Biol. Bioinform. 10(3): 645-656 (2013) - 2012
- [j28]Giorgio Gonnella
Readjoiner: a fast and memory efficient string graph-based sequence assembler. BMC Bioinform. 13: 82 (2012) - [j27]Sascha Steinbiss
A New Efficient Data Structure for Storage and Retrieval of Multiple Biosequences. IEEE ACM Trans. Comput. Biol. Bioinform. 9(2): 345-357 (2012) - 2011
- [j26]Fernando Meyer
Structator: fast index-based search for RNA sequence-structure patterns. BMC Bioinform. 12: 214 (2011) - [j25]Malte Mader
FISH Oracle: a web server for flexible visualization of DNA copy number data in a genomic context. J. Clin. Bioinform. 1: 20 (2011) - [j24]Malik Alawi, Stefan Kurtz, Michael Beckstette:
CASSys: an integrated software-system for the interactive analysis of ChIP-seq data. J. Integr. Bioinform. 8(2) (2011)
2000 – 2009
- 2009
- [j23]Sascha Steinbiss
AnnotationSketch: a genome annotation drawing library. Bioinform. 25(4): 533-534 (2009) - [j22]Michael Beckstette, Robert Homann, Robert Giegerich, Stefan Kurtz:
Significant speedup of database searches with HMMs by search space reduction with PSSM family models. Bioinform. 25(24): 3251-3258 (2009) - [j21]Steve Hoffmann, Christian Otto
Fast Mapping of Short Sequences with Mismatches, Insertions and Deletions Using Index Structures. PLoS Comput. Biol. 5(9) (2009) - 2008
- [j20]Mohamed Ibrahim Abouelhoda, Stefan Kurtz, Enno Ohlebusch:
CoCoNUT: an efficient system for the comparison and analysis of genomes. BMC Bioinform. 9 (2008) - [j19]David Ellinghaus
LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons. BMC Bioinform. 9 (2008) - [j18]Julia Herold, Stefan Kurtz, Robert Giegerich:
Efficient computation of absent words in genomic sequences. BMC Bioinform. 9 (2008) - [j17]Enno Ohlebusch, Stefan Kurtz:
Space Efficient Computation of Rare Maximal Exact Matches between Multiple Sequences. J. Comput. Biol. 15(4): 357-377 (2008) - 2007
- [j16]Fiona G. G. Nielsen, Stefan Gräf, Xinmin Zhang, Stefan Kurtz, Sergei Denissov, Roland Green, Ewan Birney, Paul Flicek, Martijn A. Huynen, Henk Stunnenberg:
Optimising oligonucleotide array design for ChIP-on-chip. BMC Bioinform. 8(S-8) (2007) - [c11]Stefan Gräf, Fiona G. G. Nielsen
Optimized design and assessment of whole genome tiling arrays. ISMB/ECCB (Supplement of Bioinformatics) 2007: 195-204 - 2006
- [j15]Michael Beckstette, Robert Homann, Robert Giegerich, Stefan Kurtz:
Fast index based algorithms and software for matching position specific scoring matrices. BMC Bioinform. 7: 389 (2006) - 2005
- [j14]Gordon Gremme, Volker Brendel, Michael E. Sparks
Engineering a software tool for gene structure prediction in higher organisms. Inf. Softw. Technol. 47(15): 965-978 (2005) - [e1]Andrew E. Torda, Stefan Kurtz, Matthias Rarey:
Proceedings of the German Conference on Bioinformatics (GCB 2005), Hamburg, Germany, October 5-7, 2005. LNI P-71, GI 2005, ISBN 3-88579-400-4 [contents] - 2004
- [j13]Jomuna V. Choudhuri, Chris Schleiermacher, Stefan Kurtz, Robert Giegerich:
GenAlyzer: interactive visualization of sequence similarities between entire genomes. Bioinform. 20(12): 1964-1965 (2004) - [j12]Mohamed Ibrahim Abouelhoda, Stefan Kurtz, Enno Ohlebusch:
Replacing suffix trees with enhanced suffix arrays. J. Discrete Algorithms 2(1): 53-86 (2004) - [j11]Jan Krüger, Alexander Sczyrba
e2g: an interactive web-based server for efficiently mapping large EST and cDNA sets to genomic sequences. Nucleic Acids Res. 32(Web-Server-Issue): 301-304 (2004) - [c10]Michael Beckstette, Dirk Strothmann, Robert Homann, Robert Giegerich, Stefan Kurtz:
PoSSuMsearch: Fast and Sensitive Matching of Position Specific Scoring Matrices using Enhanced Suffix Arrays. German Conference on Bioinformatics 2004: 53-64 - [r1]Stefan Kurtz, Stefano Lonardi:
Computational Biology. Handbook of Data Structures and Applications 2004 - 2003
- [j10]Patrick S. G. Chain
An Applications-focused Review of Comparative Genomics Tools: Capabilities, Limitations and Future Challenges. Briefings Bioinform. 4(2): 105-123 (2003) - [j9]Alexander Sczyrba
RNA-related tools on the Bielefeld Bioinformatics Server. Nucleic Acids Res. 31(13): 3767-3770 (2003) - [j8]Robert Giegerich, Stefan Kurtz, Jens Stoye
Efficient implementation of lazy suffix trees. Softw. Pract. Exp. 33(11): 1035-1049 (2003) - [c9]Matthias Höchsmann, Thomas Töller, Robert Giegerich, Stefan Kurtz:
Local Similarity in RNA Secondary Structures. CSB 2003: 159-168 - 2002
- [j7]J. Patrick Fitch, Shea N. Gardner, Thomas A. Kuczmarski, Stefan Kurtz, Rich Myers, Linda L. Ott, Thomas R. Slezak, Elizabeth A. Vitalis, Adam T. Zemla, Paula M. McCready:
Rapid development of nucleic acid diagnostics. Proc. IEEE 90(11): 1708-1721 (2002) - [c8]Michael Höhl, Stefan Kurtz, Enno Ohlebusch:
Efficient multiple genome alignment. ISMB 2002: 312-320 - [c7]Mohamed Ibrahim Abouelhoda, Enno Ohlebusch, Stefan Kurtz:
Optimal Exact Strring Matching Based on Suffix Arrays. SPIRE 2002: 31-43 - [c6]Mohamed Ibrahim Abouelhoda, Stefan Kurtz, Enno Ohlebusch:
The Enhanced Suffix Array and Its Applications to Genome Analysis. WABI 2002: 449-463 - 2001
- [j6]Stefan Gräf, Dirk Strothmann, Stefan Kurtz, Gerhard Steger:
HyPaLib: a database of RNAs and RNA structural elements defined by hybrid patterns. Nucleic Acids Res. 29(1): 196-198 (2001) - 2000
- [j5]Bernhard Balkenhol, Stefan Kurtz:
Universal Data Compression Based on the Burrows-Wheeler Transformation: Theory and Practice. IEEE Trans. Computers 49(10): 1043-1053 (2000) - [c5]Stefan Kurtz, Enno Ohlebusch, Chris Schleiermacher, Jens Stoye, Robert Giegerich:
Computation and Visualization of Degenerate Repeats in Complete Genomes. ISMB 2000: 228-238
1990 – 1999
- 1999
- [j4]Stefan Kurtz, Chris Schleiermacher:
REPuter: fast computation of maximal repeats in complete genomes. Bioinform. 15(5): 426-427 (1999) - [j3]Stefan Kurtz:
Reducing the space requirement of suffix trees. Softw. Pract. Exp. 29(13): 1149-1171 (1999) - [c4]Bernhard Balkenhol, Stefan Kurtz, Yuri M. Shtarkov:
Modifications of the Burrows and Wheeler Data Compression Algorithm. Data Compression Conference 1999: 188-197 - [c3]Robert Giegerich, Stefan Kurtz, Jens Stoye
Efficient Implementation of Lazy Suffix Trees. WAE 1999: 30-42 - 1997
- [j2]Robert Giegerich, Stefan Kurtz:
From Ukkonen to McCreight and Weiner: A Unifying View of Linear-Time Suffix Tree Construction. Algorithmica 19(3): 331-353 (1997) - [c2]Stefan Kurtz, Gene Myers:
Estimating the Probability of Approximate Matches. CPM 1997: 52-64 - 1995
- [b1]Stefan Kurtz:
Fundamental algorithms for a declarative pattern matching system. Bielefeld University, Germany, 1995, pp. 1-237 - [j1]Robert Giegerich, Stefan Kurtz:
A Comparison of Imperative and Purely Functional Suffix Tree Constructions. Sci. Comput. Program. 25(2-3): 187-218 (1995) - 1994
- [c1]Robert Giegerich, Stefan Kurtz:
Suffix Trees in the Functional Programming Paradigm. ESOP 1994: 225-240
Coauthor Index
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