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Eric Tannier
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- affiliation: University of Lyon, LBBE, France
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2020 – today
- 2022
- [j35]Simon Penel
, Hugo Menet, Théo Tricou
Thirdkind: displaying phylogenetic encounters beyond 2-level reconciliation. Bioinform. 38(8): 2350-2352 (2022) - [j34]Hugo Menet, Vincent Daubin
Phylogenetic reconciliation. PLoS Comput. Biol. 18(11): 1010621 (2022) - 2020
- [j33]Adrián A. Davín, Théo Tricou
Zombi: a phylogenetic simulator of trees, genomes and sequences that accounts for dead linages. Bioinform. 36(4): 1286-1288 (2020) - [j32]Nicolas Comte, Benoit Morel, Damir Hasic, Laurent Guéguen, Bastien Boussau, Vincent Daubin, Simon Penel, Céline Scornavacca, Manolo Gouy, Alexandros Stamatakis
Treerecs: an integrated phylogenetic tool, from sequences to reconciliations. Bioinform. 36(18): 4822-4824 (2020)
2010 – 2019
- 2019
- [j31]Damir Hasic
Gene tree reconciliation including transfers with replacement is NP-hard and FPT. J. Comb. Optim. 38(2): 502-544 (2019) - 2018
- [j30]Wandrille Duchemin
RecPhyloXML: a format for reconciled gene trees. Bioinform. 34(21): 3646-3652 (2018) - [j29]Yoann Anselmetti, Wandrille Duchemin, Eric Tannier, Cédric Chauve, Sèverine Bérard:
Phylogenetic signal from rearrangements in 18 Anopheles species by joint scaffolding extant and ancestral genomes. BMC Genom. 19(S2) (2018) - 2017
- [j28]Guillaume Fertin
Algorithms for computing the double cut and join distance on both gene order and intergenic sizes. Algorithms Mol. Biol. 12(1): 16:1-16:11 (2017) - [j27]Edwin Jacox, Mathias Weller, Eric Tannier, Céline Scornavacca:
Resolution and reconciliation of non-binary gene trees with transfers, duplications and losses. Bioinform. 33(7): 980-987 (2017) - [i4]Damir Hasic, Eric Tannier:
Gene tree species tree reconciliation with gene conversion. CoRR abs/1703.08950 (2017) - [i3]Damir Hasic, Eric Tannier:
Gene tree reconciliation including transfers with replacement is hard and FPT. CoRR abs/1709.04459 (2017) - 2016
- [j26]Laurent Bulteau
Genome rearrangements with indels in intergenes restrict the scenario space. BMC Bioinform. 17(S-14): 225-231 (2016) - [c13]Priscila Biller, Carole Knibbe, Guillaume Beslon, Eric Tannier:
Comparative Genomics on Artificial Life. CiE 2016: 35-44 - [c12]Guillaume Fertin
Genome Rearrangements on Both Gene Order and Intergenic Regions. WABI 2016: 162-173 - [r2]Eric Tannier:
Sorting Signed Permutations by Reversal (Reversal Sequence). Encyclopedia of Algorithms 2016: 2028-2032 - 2015
- [j25]Magali Semeria, Eric Tannier, Laurent Guéguen:
Probabilistic modeling of the evolution of gene synteny within reconciled phylogenies. BMC Bioinform. 16(S14): S5 (2015) - [j24]Priscila Biller, Laurent Guéguen, Eric Tannier:
Moments of genome evolution by Double Cut-and-Join. BMC Bioinform. 16(S14): S7 (2015) - [e3]Jean-Guillaume Dumas, Jean-Louis Roch, Eric Tannier, Sébastien Varrette:
Foundations of Coding - Compression, Encryption, Error Correction. Wiley 2015, ISBN 978-1-118-88144-6, pp. I-XVIII, 1-355 - 2014
- [j23]István Miklós, Sándor Z. Kiss, Eric Tannier:
Counting and sampling SCJ small parsimony solutions. Theor. Comput. Sci. 552: 83-98 (2014) - 2013
- [j22]Ashok Rajaraman, Eric Tannier, Cédric Chauve
FPSAC: fast phylogenetic scaffolding of ancient contigs. Bioinform. 29(23): 2987-2994 (2013) - [j21]Murray Patterson, Gergely J. Szöllosi
Lateral gene transfer, rearrangement, reconciliation. BMC Bioinform. 14(S-15): S4 (2013) - [j20]Manuel Lafond, Magali Semeria, Krister M. Swenson, Eric Tannier, Nadia El-Mabrouk:
Gene tree correction guided by orthology. BMC Bioinform. 14(S-15): S5 (2013) - [p1]Cédric Chauve, Nadia El-Mabrouk, Laurent Guéguen, Magali Semeria, Eric Tannier:
Duplication, Rearrangement and Reconciliation: A Follow-Up 13 Years Later. Models and Algorithms for Genome Evolution 2013: 47-62 - [e2]Cédric Chauve, Nadia El-Mabrouk, Eric Tannier:
Models and Algorithms for Genome Evolution. Springer 2013, ISBN 978-1-4471-5297-2 [contents] - [i2]Ján Manuch, Murray Patterson, Roland Wittler, Cédric Chauve, Eric Tannier:
Linearization of ancestral multichromosomal genomes. CTW 2013: 169-173 - [i1]István Miklós, Sándor Z. Kiss, Eric Tannier:
On sampling SCJ rearrangement scenarios. CoRR abs/1304.2170 (2013) - 2012
- [j19]Sèverine Bérard, Coralie Gallien, Bastien Boussau
Evolution of gene neighborhoods within reconciled phylogenies. Bioinform. 28(18): 382-388 (2012) - [j18]Bradley R. Jones
ANGES: reconstructing ANcestral GEnomeS maps. Bioinform. 28(18): 2388-2390 (2012) - [j17]Ján Manuch, Murray Patterson
Linearization of ancestral multichromosomal genomes. BMC Bioinform. 13(S-19): S11 (2012) - [j16]István Miklós, Eric Tannier:
Approximating the number of Double Cut-and-Join scenarios. Theor. Comput. Sci. 439: 30-40 (2012) - [c11]Matthias Bernt
Preserving Inversion Phylogeny Reconstruction. WABI 2012: 1-13 - 2011
- [b2]Eric Tannier:
Evolution Combinatoire, Algorithmique des Chromosomes. Claude Bernard University Lyon 1, France, 2011 - [j15]Haris Gavranovic, Cédric Chauve
Mapping ancestral genomes with massive gene loss: A matrix sandwich problem. Bioinform. 27(13): 257-265 (2011) - [j14]Aïda Ouangraoua, Eric Tannier, Cédric Chauve
Reconstructing the architecture of the ancestral amniote genome. Bioinform. 27(19): 2664-2671 (2011) - 2010
- [j13]Christian Baudet, Claire Lemaitre, Zanoni Dias, Christian Gautier, Eric Tannier, Marie-France Sagot:
Cassis: detection of genomic rearrangement breakpoints. Bioinform. 26(15): 1897-1898 (2010) - [j12]István Miklós, Eric Tannier:
Bayesian sampling of genomic rearrangement scenarios via double cut and join. Bioinform. 26(24): 3012-3019 (2010) - [j11]Sophie S. Abby
Detecting lateral gene transfers by statistical reconciliation of phylogenetic forests. BMC Bioinform. 11: 324 (2010) - [j10]Cédric Chauve
Yeast Ancestral Genome Reconstructions: The Possibilities of Computational Methods II. J. Comput. Biol. 17(9): 1097-1112 (2010) - [c10]Haris Gavranovic, Eric Tannier:
Guided Genome Halving: Provably Optimal Solutions Provide Good Insights into the Preduplication Ancestral Genome of Saccharomyces Cerevisiae. Pacific Symposium on Biocomputing 2010: 21-30 - [e1]Eric Tannier:
Comparative Genomics - International Workshop, RECOMB-CG 2010, Ottawa, Canada, October 9-11, 2010. Proceedings. Lecture Notes in Computer Science 6398, Springer 2010, ISBN 978-3-642-16180-3 [contents]
2000 – 2009
- 2009
- [b1]Guillaume Fertin, Anthony Labarre, Irena Rusu, Eric Tannier, Stéphane Vialette:
Combinatorics of Genome Rearrangements. Computational molecular biology, MIT Press 2009, ISBN 978-0-262-06282-4, pp. I-XI, 1-288 - [j9]Eric Tannier, Chunfang Zheng, David Sankoff:
Multichromosomal median and halving problems under different genomic distances. BMC Bioinform. 10 (2009) - [j8]Sèverine Bérard, Annie Chateau, Cédric Chauve
Computation of Perfect DCJ Rearrangement Scenarios with Linear and Circular Chromosomes. J. Comput. Biol. 16(10): 1287-1309 (2009) - [c9]Aïda Ouangraoua, Frédéric Boyer, Andrew W. McPherson, Eric Tannier, Cédric Chauve:
Prediction of Contiguous Regions in the Amniote Ancestral Genome. ISBRA 2009: 173-185 - [c8]Eric Tannier:
Yeast Ancestral Genome Reconstructions: The Possibilities of Computational Methods. RECOMB-CG 2009: 1-12 - 2008
- [j7]Claire Lemaitre, Eric Tannier, Christian Gautier, Marie-France Sagot:
Precise detection of rearrangement breakpoints in mammalian chromosomes. BMC Bioinform. 9 (2008) - [j6]Cédric Chauve
A Methodological Framework for the Reconstruction of Contiguous Regions of Ancestral Genomes and Its Application to Mammalian Genomes. PLoS Comput. Biol. 4(11) (2008) - [j5]Marília D. V. Braga, Marie-France Sagot, Céline Scornavacca, Eric Tannier:
Exploring the Solution Space of Sorting by Reversals, with Experiments and an Application to Evolution. IEEE ACM Trans. Comput. Biol. Bioinform. 5(3): 348-356 (2008) - [c7]Renaud Lenne, Christine Solnon, Thomas Stützle
Reactive Stochastic Local Search Algorithms for the Genomic Median Problem. EvoCOP 2008: 266-276 - [c6]Sèverine Bérard, Annie Chateau, Cédric Chauve, Christophe Paul
Perfect DCJ Rearrangement. RECOMB-CG 2008: 158-169 - [c5]Eric Tannier, Chunfang Zheng, David Sankoff:
Multichromosomal Genome Median and Halving Problems. WABI 2008: 1-13 - [r1]Eric Tannier:
Sorting Signed Permutations by Reversal (Reversal Sequence). Encyclopedia of Algorithms 2008 - 2007
- [j4]Eric Tannier, Anne Bergeron, Marie-France Sagot:
Advances on sorting by reversals. Discret. Appl. Math. 155(6-7): 881-888 (2007) - [j3]Yoan Diekmann
Evolution under Reversals: Parsimony and Conservation of Common Intervals. IEEE ACM Trans. Comput. Biol. Bioinform. 4(2): 301-309 (2007) - [c4]Marília D. V. Braga, Marie-France Sagot, Céline Scornavacca, Eric Tannier:
The Solution Space of Sorting by Reversals. ISBRA 2007: 293-304 - 2005
- [c3]Marie-France Sagot, Eric Tannier:
Perfect Sorting by Reversals. COCOON 2005: 42-51 - 2004
- [j2]András Sebö, Eric Tannier:
On Metric Generators of Graphs. Math. Oper. Res. 29(2): 383-393 (2004) - [c2]Eric Tannier, Marie-France Sagot:
Sorting by Reversals in Subquadratic Time. CPM 2004: 1-13 - 2003
- [j1]Sylvain Gravier, Mehdi Mhalla, Eric Tannier:
On a modular domination game. Theor. Comput. Sci. 306(1-3): 291-303 (2003) - 2001
- [c1]András Sebö, Eric Tannier:
Connected Joins in Graphs. IPCO 2001: 383-395
Coauthor Index
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