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Alexander V. Spirov
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2020 – today
- 2024
- [j25]Alexander V. Spirov
, Ekaterina M. Myasnikova
Body plan evolvability: The role of variability in gene regulatory networks. J. Bioinform. Comput. Biol. 22(3): 2450011:1-2450011:24 (2024) - 2023
- [j24]Alexander V. Spirov:
Evolution of the RNA world: From signals to codes. Biosyst. 234: 105043 (2023) - [j23]Alexander V. Spirov
Problem of Domain/Building Block Preservation in the Evolution of Biological Macromolecules and Evolutionary Computation. IEEE ACM Trans. Comput. Biol. Bioinform. 20(2): 1345-1362 (2023) - 2021
- [j22]Anton V. Eremeev
Modeling SELEX for regulatory regions using Royal Road and Royal Staircase fitness functions. Biosyst. 200: 104312 (2021) - [j21]Ekaterina M. Myasnikova, Marat A. Sabirov, Alexander V. Spirov:
Quantitative Analysis of the Dynamics of Maternal Gradients in the Early Drosophila Embryo. J. Comput. Biol. 28(8): 747-757 (2021) - 2020
- [j20]Ekaterina M. Myasnikova
Gene regulatory networks in Drosophila early embryonic development as a model for the study of the temporal identity of neuroblasts. Biosyst. 197: 104192 (2020) - [c16]Ekaterina M. Myasnikova, Victoria Yu. Samuta, Alexander V. Spirov:
Quantitative Analysis of the Dynamics of Maternal Gradients in the Early Drosophila Embryo. ISBRA 2020: 398-405
2010 – 2019
- 2019
- [j19]Alexander V. Spirov, Ekaterina M. Myasnikova:
Linguistic modelling of gene regulation: Translation from the language of experiments to the language of modelling. ICT Express 5(3): 182-186 (2019) - [j18]Polina Zhornikova, Nina Golyandina
Noise model estimation with application to gene expression. J. Bioinform. Comput. Biol. 17(2): 1950009:1-1950009:20 (2019) - [c15]Alexander V. Spirov, Ekaterina M. Myasnikova:
Techniques from evolutionary computation to implement as experimental approaches in synthetic biology: tests in silico. GECCO (Companion) 2019: 81-82 - [c14]Anton V. Eremeev
Evaluation of runtime bounds for SELEX procedure with high selection pressure. GECCO (Companion) 2019: 113-114 - 2018
- [j17]Ekaterina M. Myasnikova, Alexander V. Spirov:
Robustness of expression pattern formation due to dynamic equilibrium in gap gene system of an early Drosophila embryo. Biosyst. 166: 50-60 (2018) - [j16]Ekaterina M. Myasnikova
Relative sensitivity analysis of the predictive properties of sloppy models. J. Bioinform. Comput. Biol. 16(2): 1840008:1-1840008:18 (2018) - [j15]Theodore Alexandrov, Nina Golyandina
Two-Exponential Models of Gene Expression Patterns for Noisy Experimental Data. J. Comput. Biol. 25(11): 1220-1230 (2018) - [i2]Anton V. Eremeev, Alexander V. Spirov:
Modularity in biological evolution and evolutionary computation. CoRR abs/1811.07511 (2018) - 2016
- [j14]Alexander V. Spirov, Ekaterina M. Myasnikova, David M. Holloway:
Sequential construction of a model for modular gene expression control, applied to spatial patterning of the Drosophila gene hunchback. J. Bioinform. Comput. Biol. 14(2): 1641005:1-1641005:24 (2016) - 2015
- [j13]Leonid Zamdborg, David M. Holloway, Juan Julián Merelo Guervós
Forced evolution in silico by artificial transposons and their genetic operators: The ant navigation problem. Inf. Sci. 306: 88-110 (2015) - 2014
- [j12]Elizaveta A. Zagrijchuk, Marat A. Sabirov, David M. Holloway
In silico evolution of the hunchback gene indicates redundancy in cis-regulatory organization and spatial gene expression. J. Bioinform. Comput. Biol. 12(2) (2014) - [j11]Alexander V. Spirov, Elizaveta A. Zagriychuk, David M. Holloway
Evolutionary Design of Gene Networks: Forced Evolution by Genomic Parasites. Parallel Process. Lett. 24(2) (2014) - 2013
- [c13]Alexander V. Spirov, David M. Holloway
Modeling the Evolution of Gene Regulatory Networks for Spatial Patterning in Embryo Development. ICCS 2013: 1362-1371 - [c12]Alexander V. Spirov, Carlos E. Vanario-Alonso, Ekaterina N. Spirova, David M. Holloway:
Experimental Determination of Intrinsic Drosophila Embryo Coordinates by Evolutionary Computation. PRIB 2013: 126-137 - 2012
- [c11]Alexander V. Spirov, David M. Holloway
Evolution in silico of genes with multiple regulatory modules on the example of the Drosophila segmentation gene hunchback. CIBCB 2012: 244-251 - [c10]Alexander V. Spirov, Nina Golyandina
Measuring Gene Expression Noise in Early Drosophila Embryos: The Highly Dynamic Compartmentalized Micro-environment of the Blastoderm Is One of the Main Sources of Noise. EvoBIO 2012: 177-188 - [c9]David M. Holloway, Alexander B. Kazansky, Alexander V. Spirov:
Complexification of Gene Networks by Co-evolution of Genomes and Genomic Parasites. IJCCI 2012: 238-244 - [c8]Nina Golyandina
Measuring Gene Expression Noise in Early Drosophila Embryos: Nucleus-to-nucleus Variability. ICCS 2012: 373-382 - 2011
- [j10]David M. Holloway
Gene Expression Noise in Spatial Patterning: hunchback Promoter Structure Affects Noise Amplitude and Distribution in Drosophila Segmentation. PLoS Comput. Biol. 7(2) (2011) - [c7]Alexander V. Spirov, David M. Holloway:
Retroviral Genetic Algorithms - Implementation with Tags and Validation Against Benchmark Functions. IJCCI (ECTA-FCTA) 2011: 233-238 - 2010
- [c6]Alexander V. Spirov, David M. Holloway
Design of a dynamic model of genes with multiple autonomous regulatory modules by evolutionary computations. ICCS 2010: 1005-1014
2000 – 2009
- 2009
- [j9]Manu, Svetlana Surkova
Canalization of Gene Expression and Domain Shifts in the Drosophila Blastoderm by Dynamical Attractors. PLoS Comput. Biol. 5(3) (2009) - [i1]Alexander V. Spirov, Alexander B. Kazansky, Leonid Zamdborg, Juan Julián Merelo Guervós, Vladimir F. Levchenko:
Forced Evolution in Silico by Artificial Transposons and their Genetic Operators: The John Muir Ant Problem. CoRR abs/0910.5542 (2009) - 2008
- [j8]Theodore Alexandrov
Singular Spectrum Analysis of Gene Expression Profiles of Early Drosophila embryo: Exponential-in-Distance Patterns. J. Electr. Comput. Eng. 2008 (2008) - [j7]Francisco J. P. Lopes
Spatial Bistability Generates hunchback Expression Sharpness in the Drosophila Embryo. PLoS Comput. Biol. 4(9) (2008) - 2003
- [j6]Alexander V. Spirov, David M. Holloway
Evolutionary Techniques for Image Processing a Large Dataset of Early Drosophila Gene Expression. EURASIP J. Adv. Signal Process. 2003(8): 824-833 (2003) - [j5]Alexander V. Spirov, David M. Holloway:
Making the body plan: Precision in the genetic hierarchy of Drosophila embryo segmentation. Silico Biol. 3(1-2): 89-100 (2003) - 2002
- [j4]Alexander V. Spirov, Mikhail Borovsky, Olesya A. Spirova:
HOX Pro DB: the functional genomics of hox ensembles. Nucleic Acids Res. 30(1): 351-353 (2002) - [j3]Alexander V. Spirov, Alexander B. Kazansky, Dmitry L. Timakin, John Reinitz:
Reconstruction of the Dynamics of Drosophila Genes Expression from Sets of Images Sharing a Common Pattern. Real Time Imaging 8(6): 507-518 (2002) - [c5]Alexander V. Spirov, Alexander B. Kazansky:
Jumping Genes-mutators Can Rise Efficacy Of Evolutionary Search. GECCO 2002: 561-568 - 2001
- [c4]Alexander V. Spirov, Dmitry L. Timakin, John Reinitz, David Kosman:
Using of Evolutionary Computations in Image Processing for Quantitative Atlas of Drosophila Genes Expression. EvoWorkshops 2001: 374-383 - 2000
- [j2]Alexander V. Spirov, Timothy Bowler, John Reinitz:
HOX Pro: a specialized database for clusters and networks of homeobox genes. Nucleic Acids Res. 28(1): 337-340 (2000) - [c3]Alexander V. Spirov, Dmitry L. Timakin, John Reinitz, David Kosman:
Experimental Determination of Drosophila Embryonic Coordinates by Genetic Algorithms, the Simplex method, and Their Hybrid. EvoWorkshops 2000: 97-106
1990 – 1999
- 1998
- [j1]Vassili N. Serov, Alexander V. Spirov, Maria Samsonova:
Graphical interface to the genetic network database GeNet. Bioinform. 14(6): 546-547 (1998) - [c2]Alexander V. Spirov, A. S. Kadyrov:
Transposon Element Technique Applied to GA-Based John Muir's Trail Test. HPCN Europe 1998: 925-928 - 1996
- [c1]Alexander V. Spirov:
Self-Assemblage of Gene Nets in Evolution via Recruiting of New Netters. PPSN 1996: 91-100
Coauthor Index
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