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Daniel Rokhsar
Person information
- affiliation: Lawrence Berkeley National Laboratory, Berkeley, CA, USA
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2020 – today
- 2022
- [c6]Giulia Guidi, Gabriel Raulet, Daniel Rokhsar, Leonid Oliker, Katherine A. Yelick
, Aydin Buluç
Distributed-Memory Parallel Contig Generation for De Novo Long-Read Genome Assembly. ICPP 2022: 82:1-82:11 - [i3]Giulia Guidi, Gabriel Raulet, Daniel Rokhsar, Leonid Oliker, Katherine A. Yelick
Distributed-Memory Parallel Contig Generation for De Novo Long-Read Genome Assembly. CoRR abs/2207.04350 (2022) - 2021
- [c5]Giulia Guidi, Marquita Ellis, Daniel Rokhsar, Katherine A. Yelick, Aydin Buluç:
BELLA: Berkeley Efficient Long-Read to Long-Read Aligner and Overlapper. ACDA 2021: 123-134
2010 – 2019
- 2017
- [i2]Evangelos Georganas, Steven A. Hofmeyr, Rob Egan, Aydin Buluç, Leonid Oliker, Daniel Rokhsar, Katherine A. Yelick:
Extreme-Scale De Novo Genome Assembly. CoRR abs/1705.11147 (2017) - 2016
- [i1]Jarrod Chapman, Isaac Y. Ho, Eugene Goltsman, Daniel S. Rokhsar:
Meraculous2: fast accurate short-read assembly of large polymorphic genomes. CoRR abs/1608.01031 (2016) - 2015
- [c4]Evangelos Georganas, Aydin Buluç
merAligner: A Fully Parallel Sequence Aligner. IPDPS 2015: 561-570 - [c3]Evangelos Georganas, Aydin Buluç
HipMer: an extreme-scale de novo genome assembler. SC 2015: 14:1-14:11 - 2014
- [c2]Veronika Strnadova, Aydin Buluç
Efficient and accurate clustering for large-scale genetic mapping. BIBM 2014: 3-10 - [c1]Evangelos Georganas, Aydin Buluç
Parallel De Bruijn Graph Construction and Traversal for De Novo Genome Assembly. SC 2014: 437-448 - 2012
- [j4]Igor V. Grigoriev
The Genome Portal of the Department of Energy Joint Genome Institute. Nucleic Acids Res. 40(Database-Issue): 26-32 (2012) - [j3]David M. Goodstein
Phytozome: a comparative platform for green plant genomics. Nucleic Acids Res. 40(Database-Issue): 1178-1186 (2012)
2000 – 2009
- 2006
- [j2]James C. Sullivan, Joseph F. Ryan
StellaBase: The Nematostella vectensis Genomics Database. Nucleic Acids Res. 34(Database-Issue): 495-499 (2006) - 2005
- [j1]Shaun Mahony
Transcription factor binding site identification using the self-organizing map. Bioinform. 21(9): 1807-1814 (2005)
Coauthor Index
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