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Marieke L. Kuijjer
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2020 – today
- 2024
- [j12]Daniel Osório
, Anna Capasso, S. Gail Eckhardt, Uma Giri, Alexander Somma, Todd M. Pitts, Christopher H. Lieu, Wells A. Messersmith, Stacey M. Bagby, Harinder Singh, Jishnu Das
Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcriptomics data. Nat. Comput. Sci. 4(3): 237-250 (2024) - [i2]Ping-Han Hsieh, Ru-Xiu Hsiao, Katalin Ferenc, Anthony Mathelier, Rebekka Burkholz, Chien-Yu Chen, Geir Kjetil Sandve, Tatiana Belova, Marieke L. Kuijjer:
CAVACHON: a hierarchical variational autoencoder to integrate multi-modal single-cell data. CoRR abs/2405.18655 (2024) - 2023
- [j11]Ping-Han Hsieh, Camila Miranda Lopes-Ramos, Manuela Zucknick
Adjustment of spurious correlations in co-expression measurements from RNA-Sequencing data. Bioinform. 39(10) (2023) - 2022
- [j10]Daniel Osório, Marieke L. Kuijjer
rPanglaoDB: an R package to download and merge labeled single-cell RNA-seq data from the PanglaoDB database. Bioinform. 38(2): 580-582 (2022) - [j9]Eric A. Stahlberg, Mohamed Abdel-Rahman, Boris Aguilar, Alireza Asadpoure, Robert A. Beckman, Lynn L. Borkon, Jeffrey N. Bryan, Colleen M. Cebulla, Young Hwan Chang, Ansu Chatterjee
Exploring approaches for predictive cancer patient digital twins: Opportunities for collaboration and innovation. Frontiers Digit. Health 4 (2022) - [j8]Marouen Ben Guebila
GRAND: a database of gene regulatory network models across human conditions. Nucleic Acids Res. 50(D1): 610-621 (2022) - 2021
- [j7]Milena Pavlovic
The immuneML ecosystem for machine learning analysis of adaptive immune receptor repertoires. Nat. Mach. Intell. 3(11): 936-944 (2021) - 2020
- [j6]Jipeng Qiang
Clustering Sparse Data With Feature Correlation With Application to Discover Subtypes in Cancer. IEEE Access 8: 67775-67789 (2020) - [j5]Marieke L. Kuijjer
PUMA: PANDA Using MicroRNA Associations. Bioinform. 36(18): 4765-4773 (2020) - [c2]Olga Andreeva
Catalysis Clustering with GAN by Incorporating Domain Knowledge. KDD 2020: 1344-1352
2010 – 2019
- 2019
- [j4]Ian Barnett
EndNote: Feature-based classification of networks. Netw. Sci. 7(3): 438-444 (2019) - [j3]David G. P. van IJzendoorn
Machine learning analysis of gene expression data reveals novel diagnostic and prognostic biomarkers and identifies therapeutic targets for soft tissue sarcomas. PLoS Comput. Biol. 15(2) (2019) - 2018
- [c1]Tianyu Kang, Kourosh Zarringhalam, Marieke L. Kuijjer
Clustering on Sparse Data in Non-overlapping Feature Space with Applications to Cancer Subtyping. ICDM 2018: 1079-1084 - 2017
- [j2]Joseph N. Paulson, Cho-Yi Chen
Tissue-aware RNA-Seq processing and normalization for heterogeneous and sparse data. BMC Bioinform. 18(1): 437:1-437:10 (2017) - 2016
- [j1]David G. P. van IJzendoorn
PyPanda: a Python package for gene regulatory network reconstruction. Bioinform. 32(21): 3363-3365 (2016) - [i1]Ian Barnett, Nishant Malik, Marieke L. Kuijjer, Peter J. Mucha, Jukka-Pekka Onnela:
Feature-Based Classification of Networks. CoRR abs/1610.05868 (2016)
Coauthor Index
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