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Pemra Ozbek
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2020 – today
- 2022
- [j11]Metin Yazar
, Pemra Ozbek
Assessment of 13 in silico pathogenicity methods on cancer-related variants. Comput. Biol. Medicine 145: 105434 (2022) - 2021
- [j10]Hande Beklen, Sema Arslan
Differential Interactome Based Drug Repositioning Unraveled Abacavir, Exemestane, Nortriptyline Hydrochloride, and Tolcapone as Potential Therapeutics for Colorectal Cancers. Frontiers Bioinform. 1 (2021) - [j9]Elif Naz Bingöl
Unraveling the Allosteric Communication Mechanisms in T-Cell Receptor-Peptide-Loaded Major Histocompatibility Complex Dynamics Using Molecular Dynamics Simulations: An Approach Based on Dynamic Cross Correlation Maps and Residue Interaction Energy Calculations. J. Chem. Inf. Model. 61(5): 2444-2453 (2021) - 2020
- [j8]Asuman Bunsuz
Computational investigation of peptide binding stabilities of HLA-B*27 and HLA-B*44 alleles. Comput. Biol. Chem. 84: 107195 (2020) - [j7]Metin Yazar
Revisiting allostery in CREB-binding protein (CBP) using residue-based interaction energy. J. Comput. Aided Mol. Des. 34(9): 965-974 (2020)
2010 – 2019
- 2019
- [j6]Rasim Murat Aydinkal, Onur Serçinoglu
ProSNEx: a web-based application for exploration and analysis of protein structures using network formalism. Nucleic Acids Res. 47(Webserver-Issue): W471-W476 (2019) - 2018
- [j5]Onur Serçinoglu
gRINN: a tool for calculation of residue interaction energies and protein energy network analysis of molecular dynamics simulations. Nucleic Acids Res. 46(Webserver-Issue): W554-W562 (2018) - 2016
- [j4]Pemra Ozbek
Dynamic characterization of HLA-B*44 Alleles: A comparative molecular dynamics simulation study. Comput. Biol. Chem. 62: 12-16 (2016) - [j3]Onur Serçinoglu
A computational docking study on the pH dependence of peptide binding to HLA-B27 sub-types differentially associated with ankylosing spondylitis. J. Comput. Aided Mol. Des. 30(7): 569-581 (2016) - 2015
- [j2]Seren Soner, Pemra Ozbek
DynaFace: Discrimination between Obligatory and Non-obligatory Protein-Protein Interactions Based on the Complex's Dynamics. PLoS Comput. Biol. 11(10) (2015) - 2010
- [j1]Pemra Ozbek
DNABINDPROT: fluctuation-based predictor of DNA-binding residues within a network of interacting residues. Nucleic Acids Res. 38(Web-Server-Issue): 417-423 (2010)
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