default search action
Carolina Wählby
Person information
- affiliation: Uppsala University, Sweden
Refine list
refinements active!
zoomed in on ?? of ?? records
view refined list in
export refined list as
2020 – today
- 2024
- [j12]Eduard Chelebian
, Christophe Avenel
DEPICTER: Deep representation clustering for histology annotation. Comput. Biol. Medicine 170: 108026 (2024) - [c27]Eduard Chelebian, Christophe Avenel, Carolina Wählby:
Self-Supervised Learning for Genetically Relevant Domain Identification in Morphological Images. ISBI 2024: 1-5 - [i8]Eduard Chelebian, Christophe Avenel, Carolina Wählby:
What makes for good morphology representations for spatial omics? CoRR abs/2407.20660 (2024) - 2023
- [j11]Philip J. Harrison
Evaluating the utility of brightfield image data for mechanism of action prediction. PLoS Comput. Biol. 19(7) (2023) - [j10]Erik Hallström
Label-free deep learning-based species classification of bacteria imaged by phase-contrast microscopy. PLoS Comput. Biol. 19(11) (2023) - [c26]Axel Andersson, Andrea Behanova, Carolina Wählby, Filip Malmberg:
Cell Segmentation of in situ Transcriptomics Data Using Signed Graph Partitioning. GbRPR 2023: 139-148 - [i7]Axel Andersson, Andrea Behanova, Carolina Wählby, Filip Malmberg:
Cell segmentation of in situ transcriptomics data using signed graph partitioning. CoRR abs/2312.04181 (2023) - 2022
- [j9]Sergio Marco Salas, Xiao Yuan
De novo spatiotemporal modelling of cell-type signatures in the developmental human heart using graph convolutional neural networks. PLoS Comput. Biol. 18(8) (2022) - [j8]Ankit Gupta
SimSearch: A Human-in-The-Loop Learning Framework for Fast Detection of Regions of Interest in Microscopy Images. IEEE J. Biomed. Health Informatics 26(8): 4079-4089 (2022) - [c25]Antti Ahola
Label-free Estimation of Sarcomere Orientation from Brightfield Microscopy Images of Induced Pluripotent Stem Cell Derived Cardiomyocyte Nuclei. CinC 2022: 1-4 - [i6]Eduard Chelebian, Francesco Ciompi, Carolina Wählby:
Seeded iterative clustering for histology region identification. CoRR abs/2211.07425 (2022) - 2021
- [j7]Håkan Wieslander
Deep Learning With Conformal Prediction for Hierarchical Analysis of Large-Scale Whole-Slide Tissue Images. IEEE J. Biomed. Health Informatics 25(2): 371-380 (2021) - [j6]Leslie Solorzano
Towards Automatic Protein Co-Expression Quantification in Immunohistochemical TMA Slides. IEEE J. Biomed. Health Informatics 25(2): 393-402 (2021) - 2020
- [j5]Leslie Solorzano, Gabriele Partel
TissUUmaps: interactive visualization of large-scale spatial gene expression and tissue morphology data. Bioinform. 36(15): 4363-4365 (2020) - [c24]Gabriele Partel
Graph-based image decoding for multiplexed in situ RNA detection. ICPR 2020: 3783-3790 - [c23]Nicolas Pielawski
In Silico Prediction of Cell Traction Forces. ISBI 2020: 877-881 - [c22]Anindya Gupta, Veronica Larsson, Damian J. Matuszewski, Staffan Strömblad, Carolina Wählby:
Weakly-Supervised Prediction of Cell Migration Modes in Confocal Microscopy Images Using Bayesian Deep Learning. ISBI 2020: 1626-1629 - [c21]Axel Andersson, Gabriele Partel
Transcriptome-Supervised Classification of Tissue Morphology Using Deep Learning. ISBI 2020: 1630-1633 - [c20]Nicolas Pielawski, Elisabeth Wetzer, Johan Öfverstedt, Jiahao Lu, Carolina Wählby, Joakim Lindblad, Natasa Sladoje:
CoMIR: Contrastive Multimodal Image Representation for Registration. NeurIPS 2020 - [i5]Nicolas Pielawski, Elisabeth Wetzer, Johan Öfverstedt, Jiahao Lu, Carolina Wählby, Joakim Lindblad, Natasa Sladoje:
CoMIR: Contrastive Multimodal Image Representation for Registration. CoRR abs/2006.06325 (2020)
2010 – 2019
- 2019
- [i4]Leslie Solorzano, Gabriela M. Almeida, Bárbara Mesquita, Diana Martins, Carla Oliveira, Carolina Wählby:
Whole slide image registration for the study of tumor heterogeneity. CoRR abs/1901.08317 (2019) - [i3]Peter Ström, Kimmo Kartasalo
Pathologist-Level Grading of Prostate Biopsies with Artificial Intelligence. CoRR abs/1907.01368 (2019) - [i2]Nicolas Pielawski, Carolina Wählby:
Introducing Hann windows for reducing edge-effects in patch-based image segmentation. CoRR abs/1910.07831 (2019) - 2018
- [c19]Leslie Solorzano, Gabriela M. Almeida
Whole Slide Image Registration for the Study of Tumor Heterogeneity. COMPAY/OMIA@MICCAI 2018: 95-102 - [i1]Gabriele Partel, Giorgia Milli, Carolina Wählby:
Improving Recall of In Situ Sequencing by Self-Learned Features and a Graphical Model. CoRR abs/1802.08894 (2018) - 2017
- [j4]Marco Mignardi, Omer Ishaq, Xiaoyan Qian, Carolina Wählby
Bridging Histology and Bioinformatics - Computational Analysis of Spatially Resolved Transcriptomics. Proc. IEEE 105(3): 530-541 (2017) - [c18]Sajith Kecheril Sadanandan, Johan Karlsson, Carolina Wählby
Spheroid Segmentation Using Multiscale Deep Adversarial Networks. ICCV Workshops 2017: 36-41 - [c17]Gustav Forslid, Håkan Wieslander
Deep Convolutional Neural Networks for Detecting Cellular Changes Due to Malignancy. ICCV Workshops 2017: 82-89 - [c16]Maxime Bombrun, Petter Ranefall, Joakim Lindblad
Decoding Gene Expression in 2D and 3D. SCIA (2) 2017: 257-268 - 2016
- [j3]Sajith Kecheril Sadanandan, Ozden Baltekin, Klas E. G. Magnusson, Alexis Boucharin, Petter Ranefall, Joakim Jaldén
Segmentation and Track-Analysis in Time-Lapse Imaging of Bacteria. IEEE J. Sel. Top. Signal Process. 10(1): 174-184 (2016) - [c15]Sajith Kecheril Sadanandan, Petter Ranefall, Carolina Wählby
Feature Augmented Deep Neural Networks for Segmentation of Cells. ECCV Workshops (1) 2016: 231-243 - [c14]Damian J. Matuszewski, Ida-Maria Sintorn, Jordi Carreras Puigvert, Carolina Wählby
Comparison of Flow Cytometry and Image-Based Screening for Cell Cycle Analysis. ICIAR 2016: 623-630 - [c13]Petter Ranefall, Sajith Kecheril Sadanandan, Carolina Wählby
Fast adaptive local thresholding based on ellipse fit. ISBI 2016: 205-208 - 2014
- [c12]Omer Ishaq, Johan Elf
An Evaluation of the Faster STORM Method for Super-resolution Microscopy. ICPR 2014: 4435-4440 - [c11]Alexandra Pacureanu, Rongqin Ke, Marco Mignardi, Mats F. Nilsson, Carolina Wählby:
Image based in situ sequencing for RNA analysis in tissue. ISBI 2014: 286-289 - 2013
- [j2]Milan Gavrilovic, Jimmy C. Azar, Joakim Lindblad
Blind Color Decomposition of Histological Images. IEEE Trans. Medical Imaging 32(6): 983-994 (2013) - [c10]Omer Ishaq, Joseph Negri, Mark-Anthony Bray, Alexandra Pacureanu
Automated quantification of Zebrafish tail deformation for high-throughput drug screening. ISBI 2013: 902-905 - 2010
- [c9]Carolina Wählby
Resolving clustered worms via probabilistic shape models. ISBI 2010: 552-555 - [c8]Tammy Riklin Raviv, Vebjorn Ljosa, Annie L. Conery, Frederick M. Ausubel, Anne E. Carpenter
Morphology-Guided Graph Search for Untangling Objects: C. elegans Analysis. MICCAI (3) 2010: 634-641
2000 – 2009
- 2009
- [j1]Amin Allalou, Carolina Wählby
BlobFinder, a tool for fluorescence microscopy image cytometry. Comput. Methods Programs Biomed. 94(1): 58-65 (2009) - 2007
- [c7]Carolina Wählby, Patrick Karlsson, Sara Henriksson, Chatarina Larsson, Mats F. Nilsson, Ewert Bengtsson:
Finding Cells, Finding Molecules, Finding Patterns. MDA 2007: 104-114 - [c6]Amin Allalou, Frans M. van de Rijke, Roos Jahangir Tafrechi, Anton K. Raap, Carolina Wählby:
Image Based Measurements of Single Cell mtDNA Mutation Load. SCIA 2007: 631-640 - 2006
- [c5]Karin Althoff, Johan Degerman, Carolina Wählby, Thorleif Thorlin, Jonas Faijerson, Peter S. Eriksson, Tomas Gustavsson:
Time-Lapse Microscopy and Classification of in Vitro Cell Migration Using Hidden Markov Modeling. ICASSP (5) 2006: 1165-1168 - [c4]Carolina Wählby, Patrick Karlsson, Sara Henriksson, Chatarina Larsson, Mats F. Nilsson, Ewert Bengtsson:
Finding Cells, finding moleculaes, finding patterns. ICDM (Workshops) 2006: 15-24 - 2005
- [c3]Per Holting, Carolina Wählby
Easy-to-Use Object Selection by Color Space Projections and Watershed Segmentation. ICIAP 2005: 269-276 - [c2]Amalka Pinidiyaarachchi, Carolina Wählby
Seeded Watersheds for Combined Segmentation and Tracking of Cells. ICIAP 2005: 336-343 - 2003
- [b1]Carolina Wählby:
Algorithms for Applied Digital Image Cytometry. Uppsala University, Sweden, 2003 - [c1]Carolina Wählby, Ewert Bengtsson:
Segmentation of Cell Nuclei in Tissue by Combining Seeded Watersheds with Gradient Information. SCIA 2003: 408-414
Coauthor Index
manage site settings
To protect your privacy, all features that rely on external API calls from your browser are turned off by default. You need to opt-in for them to become active. All settings here will be stored as cookies with your web browser. For more information see our F.A.Q.
Unpaywalled article links
Add open access links from to the list of external document links (if available).
Privacy notice: By enabling the option above, your browser will contact the API of unpaywall.org to load hyperlinks to open access articles. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Unpaywall privacy policy.
Archived links via Wayback Machine
For web page which are no longer available, try to retrieve content from the of the Internet Archive (if available).
Privacy notice: By enabling the option above, your browser will contact the API of archive.org to check for archived content of web pages that are no longer available. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Internet Archive privacy policy.
Reference lists
Add a list of references from ,
, and
to record detail pages.
load references from crossref.org and opencitations.net
Privacy notice: By enabling the option above, your browser will contact the APIs of crossref.org, opencitations.net, and semanticscholar.org to load article reference information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Crossref privacy policy and the OpenCitations privacy policy, as well as the AI2 Privacy Policy covering Semantic Scholar.
Citation data
Add a list of citing articles from and
to record detail pages.
load citations from opencitations.net
Privacy notice: By enabling the option above, your browser will contact the API of opencitations.net and semanticscholar.org to load citation information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the OpenCitations privacy policy as well as the AI2 Privacy Policy covering Semantic Scholar.
OpenAlex data
Load additional information about publications from .
Privacy notice: By enabling the option above, your browser will contact the API of openalex.org to load additional information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the information given by OpenAlex.
last updated on 2024-10-07 21:18 CEST by the dblp team
all metadata released as open data under CC0 1.0 license
see also: Terms of Use | Privacy Policy | Imprint
dblp was originally created in 1993 at:
since 2018, dblp has been operated and maintained by:
the dblp computer science bibliography is funded and supported by: