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Neuroinformatics, Volume 20
Volume 20, Number 1, January 2022
- John Darrell Van Horn
:
Editorial. 1-2 - John C. Gensel
Reflections on Data Sharing Practices in Spinal Cord Injury Research. 3-6 - Bradly Alicea
Data-Theoretical Synthesis of the Early Developmental Process. 7-23 - Mathew Birdsall Abrams
A Standards Organization for Open and FAIR Neuroscience: the International Neuroinformatics Coordinating Facility. 25-36 - Mathew Birdsall Abrams
Correction to: A Standards Organization for Open and FAIR Neuroscience: the International Neuroinformatics Coordinating Facility. 37-38 - Carlos A. Almeida, Abel Torres-Espin, J. Russell Huie, Dongming Sun, Linda J. Noble-Haeusslein
Excavating FAIR Data: the Case of the Multicenter Animal Spinal Cord Injury Study (MASCIS), Blood Pressure, and Neuro-Recovery. 39-52 - Mo Modarres
Biomarkers Based on Comprehensive Hierarchical EEG Coherence Analysis: Example Application to Social Competence in Autism (Preliminary Results). 53-62 - Jaime Gomez Ramirez
A Comparative Analysis of MRI Automated Segmentation of Subcortical Brain Volumes in a Large Dataset of Elderly Subjects. 63-72 - Leonel Mera-Jiménez
Volume Reduction Techniques for the Classification of Independent Components of rs-fMRI Data: a Study with Convolutional Neural Networks. 73-90 - Nipuna Senanayake
NeuroCrypt: Machine Learning Over Encrypted Distributed Neuroimaging Data. 91-108 - Christopher R. Madan
Scan Once, Analyse Many: Using Large Open-Access Neuroimaging Datasets to Understand the Brain. 109-137 - Samir Das
The C-BIG Repository: an Institution-Level Open Science Platform. 139-153 - Matteo Damascelli, Todd S. Woodward
Multiple Functional Brain Networks Related to Pain Perception Revealed by fMRI. 155-172 - Saige Rutherford
Automated Brain Masking of Fetal Functional MRI with Open Data. 173-185 - Maxwell Adam Levinson
FAIRSCAPE: a Framework for FAIR and Reproducible Biomedical Analytics. 187-202 - Abel Torres-Espin
Promoting FAIR Data Through Community-driven Agile Design: the Open Data Commons for Spinal Cord Injury (odc-sci.org). 203-219 - Aidan E. Sullivan
A Comprehensive, FAIR File Format for Neuroanatomical Structure Modeling. 221-240 - João P. G. Santos
A Modular Workflow for Model Building, Analysis, and Parameter Estimation in Systems Biology and Neuroscience. 241-259 - Jessica A. Turner
ENIGMA + COINSTAC: Improving Findability, Accessibility, Interoperability, and Re-usability. 261-275 - Richard Fitzpatrick, Melanie I. Stefan
Validation Through Collaboration: Encouraging Team Efforts to Ensure Internal and External Validity of Computational Models of Biochemical Pathways. 277-284
Volume 20, Number 2, April 2022
- Massimiliano Zanin
A Fast Transform for Brain Connectivity Difference Evaluation. 285-299 - Wen Zhang
Integrating Multimodal and Longitudinal Neuroimaging Data with Multi-Source Network Representation Learning. 301-316 - Kees M. van Hespen
Blood Flow Velocity Pulsatility and Arterial Diameter Pulsatility Measurements of the Intracranial Arteries Using 4D PC-MRI. 317-326 - Yi Wang
DTI Atlases Evaluations. 327-351 - Lanting Li, Hao Jiang, Guangqi Wen, Peng Cao, MingYi Xu, Xiaoli Liu, Jinzhu Yang, Osmar R. Zaïane:
TE-HI-GCN: An Ensemble of Transfer Hierarchical Graph Convolutional Networks for Disorder Diagnosis. 353-375 - Kelly Rootes-Murdy
Federated Analysis of Neuroimaging Data: A Review of the Field. 377-390 - Maryam Ghanbari
Altered Connectedness of the Brain Chronnectome During the Progression to Alzheimer's Disease. 391-403 - Wieslaw L. Nowinski
Towards an Architecture of a Multi-purpose, User-Extendable Reference Human Brain Atlas. 405-426 - Andrea Bizzego
Assessing Computational Methods to Quantify Mother-Child Brain Synchrony in Naturalistic Settings Based on fNIRS Signals. 427-436 - Daniel Franco-Barranco
Stable Deep Neural Network Architectures for Mitochondria Segmentation on Electron Microscopy Volumes. 437-450 - Francisco Afonso Raposo
Learning Low-Dimensional Semantics for Music and Language via Multi-Subject fMRI. 451-461 - Kay Robbins
Building FAIR Functionality: Annotating Events in Time Series Data Using Hierarchical Event Descriptors (HED). 463-481 - Cailey I. Kerley
pyPheWAS: A Phenome-Disease Association Tool for Electronic Medical Record Analysis. 483-505 - Jean-Baptiste Poline
Is Neuroscience FAIR? A Call for Collaborative Standardisation of Neuroscience Data. 507-512 - Nickolas Fularczyk, Jessica Di Re, Laura Stertz
A Learning Based Framework for Disease Prediction from Images of Human-Derived Pluripotent Stem Cells of Schizophrenia Patients. 513-523 - Shengdian Jiang
Petabyte-Scale Multi-Morphometry of Single Neurons for Whole Brains. 525-536
Volume 20, Number 3, July 2022
- Parikshat Sirpal
Multimodal Autoencoder Predicts fNIRS Resting State From EEG Signals. 537-558 - Ittai Shamir
Modelling Cortical Laminar Connectivity in the Macaque Brain. 559-573 - Xiaobing Feng, Yingrong Hua, Jianjun Zou, Shuopeng Jia
Intelligible Models for HealthCare: Predicting the Probability of 6-Month Unfavorable Outcome in Patients with Ischemic Stroke. 575-585 - Laurence Vass
A Comparison of Cranial Cavity Extraction Tools for Non-contrast Enhanced CT Scans in Acute Stroke Patients. 587-598 - Craig Poskanzer
Controlling for Spurious Nonlinear Dependence in Connectivity Analyses. 599-611 - Fubing Ouyang, Xinran Chen, Jiahui Liang, Jianle Li, Zimu Jiang, Yicong Chen, Zhicong Yan, Jinsheng Zeng, Shihui Xing
Population-Average Brain Templates and Application to Automated Voxel-Wise Analysis Pipelines for Cynomolgus Macaque. 613-626 - Serap Aydin
Cross-validated Adaboost Classification of Emotion Regulation Strategies Identified by Spectral Coherence in Resting-State. 627-639 - Nicolás Nieto
Extreme Learning Machine Design for Dealing with Unrepresentative Features. 641-650 - Lavanya Umapathy
Convolutional Neural Network Based Frameworks for Fast Automatic Segmentation of Thalamic Nuclei from Native and Synthesized Contrast Structural MRI. 651-664 - Andrea Bizzego
Reproducible Inter-Personal Brain Coupling Measurements in Hyperscanning Settings With functional Near Infra-Red Spectroscopy. 665-675 - Andrea Bizzego
Correction to: Reproducible Inter-Personal Brain Coupling Measurements in Hyperscanning Settings With functional Near Infra-Red Spectroscopy. 677 - Nirmal Das, Ewa Baczynska
3dSpAn: An interactive software for 3D segmentation and analysis of dendritic spines. 679-698 - Nirmal Das, Ewa Baczynska, Monika Bijata, Blazej Ruszczycki, Andre Zeug, Dariusz Plewczynski, Punam Kumar Saha
Correction to: 3dSpAn: An interactive software for 3D segmentation and analysis of dendritic spines. 699 - Jianzhuo Yan, Lihong Chen, Yongchuan Yu, Hongxia Xu, Zhe Xu, Ying Sheng, Jianhui Chen:
Neuroimaging-ITM: A Text Mining Pipeline Combining Deep Adversarial Learning with Interaction Based Topic Modeling for Enabling the FAIR Neuroimaging Study. 701-726 - Matteo Demuru, Dorien van Blooijs, Willemiek Zweiphenning, Dora Hermes, Frans S. S. Leijten, Maeike Zijlmans:
A Practical Workflow for Organizing Clinical Intraoperative and Long-term iEEG Data in BIDS. 727-736 - Chenhao Tan, Xin Liu, Gaoyan Zhang
Inferring Brain State Dynamics Underlying Naturalistic Stimuli Evoked Emotion Changes With dHA-HMM. 737-753 - Logan A. Walker
nGauge: Integrated and Extensible Neuron Morphology Analysis in Python. 755-764 - Francisco Estella
Design and Application of Automated Algorithms for Diagnosis and Treatment Optimization in Neurodegenerative Diseases. 765-775 - Ishaan Batta
Building Models of Functional Interactions Among Brain Domains that Encode Varying Information Complexity: A Schizophrenia Case Study. 777-791 - Thomas H. Gillespie
The Neuron Phenotype Ontology: A FAIR Approach to Proposing and Classifying Neuronal Types. 793-809 - Martin Grignard
Shamo: A Tool for Electromagnetic Modeling, Simulation and Sensitivity Analysis of the Head. 811-824 - Michiel Van Dyck, Rajiv K. Mishra, Francisco Pestana, Peter Verstraelen, Hilde Lavreysen, Juan D. Pita-Almenar, Nachiket D. Kashikar, Winnok H. De Vos
Correction to: High‑throughput Analysis of Synaptic Activity in Electrically Stimulated Neuronal Cultures. 825
Volume 20, Number 4, October 2022
- Joanna Duda-Golawska
ERP Analysis Using a Multi-Channel Matching Pursuit Algorithm. 827-862 - Berke Kiliç, Serap Aydin
Classification of Contrasting Discrete Emotional States Indicated by EEG Based Graph Theoretical Network Measures. 863-877 - Vyom Raval, Kevin P. Nguyen
Pitfalls and Recommended Strategies and Metrics for Suppressing Motion Artifacts in Functional MRI. 879-896 - Nikita Davydov
Real-time and Recursive Estimators for Functional MRI Quality Assessment. 897-917 - João Angelo Ferres Brogin
Estimating the Parameters of the Epileptor Model for Epileptic Seizure Suppression. 919-941 - Nalini M. Singh, Jordan B. Harrod, Sandya Subramanian, Mitchell B. Robinson
How Machine Learning is Powering Neuroimaging to Improve Brain Health. 943-964 - Zulqarnain Khan
A Computational Neural Model for Mapping Degenerate Neural Architectures. 965-979 - Sunitha Basodi, Rajikha Raja, Bhaskar Ray, Harshvardhan Gazula, Anand D. Sarwate, Sergey M. Plis, Jingyu Liu, Eric Verner, Vince D. Calhoun
Decentralized Brain Age Estimation Using MRI Data. 981-990 - Moritz Gerster
Separating Neural Oscillations from Aperiodic 1/f Activity: Challenges and Recommendations. 991-1012 - Chao Huang, Fleur Zeldenrust
Cortical Representation of Touch in Silico. 1013-1039 - Nicolas Fuentes, Alexis Garcia, Ramón Guevara, Roberto Orofino, Diego M. Mateos
Complexity of Brain Dynamics as a Correlate of Consciousness in Anaesthetized Monkeys. 1041-1054 - Na Zhao, Juan Yue, Zi-Jian Feng, Yang Qiao, Qiu Ge, Li-Xia Yuan
The Location Reliability of the Resting-State fMRI FC of Emotional Regions Towards rTMS Therapy. 1055-1064 - Ying-Hwey Nai
Comparison of Three Automated Approaches for Classification of Amyloid-PET Images. 1065-1075 - Michel Hu, Monica Frega, Else Tolner, Arn M. J. M. van den Maagdenberg, J. P. Frimat
MEA-ToolBox: an Open Source Toolbox for Standardized Analysis of Multi-Electrode Array Data. 1077-1092 - Etienne St-Onge
Fast Streamline Search: An Exact Technique for Diffusion MRI Tractography. 1093-1104 - Shenjun Zhong
Auto-encoded Latent Representations of White Matter Streamlines for Quantitative Distance Analysis. 1105-1120 - Andrés Carrasco
Three-Dimensional Spatial Analyses of Cholinergic Neuronal Distributions Across The Mouse Septum, Nucleus Basalis, Globus Pallidus, Nucleus Accumbens, and Caudate-Putamen. 1121-1136 - Nicolò Pecco
RS-FetMRI: a MATLAB-SPM Based Tool for Pre-processing Fetal Resting-State fMRI Data. 1137-1154 - Hang Zhou
Super-resolution Segmentation Network for Reconstruction of Packed Neurites. 1155-1167 - Sarah M. Ismail Hosni
A Graph-Based Nonlinear Dynamic Characterization of Motor Imagery Toward an Enhanced Hybrid BCI. 1169-1189
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