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Journal of Bioinformatics and Computational Biology, Volume 9
Volume 9, Number 1, February 2011
- Jianxiu Guo, Nini Rao:
Predicting protein Folding Rate from amino acid Sequence. 1-13 - Babak Alipanahi
, Xin Gao
Error Tolerant NMR Backbone Resonance Assignment and Automated Structure Generation. 15-41 - Sikander Hayat
Prediction of the Exposure Status of transmembrane beta Barrel residues from protein Sequence. 43-65 - Kanaka Durga Kedarisetti, Marcin J. Mizianty, Scott Dick, Lukasz A. Kurgan
Improved Sequence-Based Prediction of Strand residues. 67-89 - William R. Taylor, Zoe Katsimitsoulia, Alexei Poliakov
Simulation of Cell Movement and Interaction. 91-110 - Santitham Prom-on, Atthawut Chanthaphan
Enhancing Biological Relevance of a Weighted Gene Co-Expression Network for Functional Module Identification. 111-129 - Siling Wang, Yuhang Wang, Yang Xie, Guanghua Xiao:
A Novel Approach to DNA Copy Number Data Segmentation. 131-148 - Jiangning Song
Bioinformatic Approaches for Predicting substrates of Proteases. 149-178 - Wing-Cheong Wong, Sebastian Maurer-Stroh
The Janus-Faced E-Values of Hmmer2: Extreme Value Distribution or logistic Function? 179-206
Volume 9, Number 2, April 2011
- Tobias Wittkop, Sean D. Mooney:
Introduction: Advances in Computational Systems Bioinformatics. - Andrew S. Parker, Karl E. Griswold
Optimization of Therapeutic proteins to Delete T-Cell epitopes while Maintaining Beneficial Residue Interactions. 207-229 - Yan Liu, Alexandru Niculescu-Mizil, Aurélie C. Lozano, Yong Lu:
Temporal Graphical Models for Cross-Species Gene Regulatory Network Discovery. 231-250 - Elena A. Manilich, Z. Meral Özsoyoglu, Valeriy Trubachev, Tomas Radivoyevitch
Classification of Large microarray Datasets Using Fast Random Forest Construction. 251-267 - Hatice Gulcin Ozer, Yi-Wen Huang, Jiejun Wu, Jeffrey D. Parvin, Tim Hui-Ming Huang, Kun Huang:
Comparing Multiple Chip-Sequencing Experiments. 269-282 - Timothy I. Shaw
Analyzing Modular RNA Structure reveals Low Global Structural Entropy in microRNA Sequence. 283-298 - Xiongying Yuan, Yi Zhao, Changning Liu, Dongbo Bu:
Lex-SVM: Exploring the Potential of exon Expression Profiling for Disease Classification. 299-316 - Rujira Achawanantakun, Yanni Sun
Ncrna Consensus Secondary Structure Derivation Using Grammar Strings. 317-337 - Wei-Bung Wang, Tao Jiang
Inferring Haplotypes from genotypes on a Pedigree with mutations, genotyping Errors and Missing Alleles. 339-365
Volume 9, Number 3, June 2011
- Nurit Haspel, Amarda Shehu
The 5th International Conference on Bio-Inspired Models of Network, Information and Computing Systems (Bionetics 2010) Special Track on Bioinformatics. - Aleksandar Poleksic
Optimal Pairwise Alignment of Fixed protein Structures in Subquadratic Time. 367-382 - Brian S. Olson, Kevin Molloy, Amarda Shehu
In Search of the protein Native State with a Probabilistic Sampling Approach. 383-398 - Uday Kamath, Amarda Shehu
A Two-Stage Evolutionary Approach for Effective Classification of hypersensitive DNA Sequences. 399-413 - Kamal Al-Nasr, Desh Ranjan, Mohammad Zubair, Jing He
Ranking Valid Topologies of the Secondary Structure Elements Using a Constraint Graph. 415-430 - Louis Licamele, Lise Getoor:
A Method for the Detection of Meaningful and Reproducible Group Signatures from Gene Expression Profiles. 431-451
Volume 9, Number 4, August 2011
- Limsoon Wong
Brief Introduction to Some New Papers on Lateral Transfer Reconstruction, Drug Candidate Screening, Disease Gene Identification, and Other Results. - Marc Thuillard, Vincent Moulton
Identifying and Reconstructing Lateral Transfers from Distance Matrices by Combining the Minimum Contradiction Method and Neighbor-Net. 453-470 - Steve Hodgkinson
Patterns of Hydrophobicity Found in the First and Second transmembrane Domains of solute Transporters Suggest a Possible Role in Nascent protein Anchoring and Organization. 471-488 - Mohammad Tabrez Anwar Shamim
Svm-Based Method for protein Structural Class Prediction Using Secondary Structural Content and Structural Information of amino acids. 489-502 - Yun Li
Association of Feature Gene Expression with Structural Fingerprints of Chemical Compounds. 503-519 - Reiji Teramoto, Tsuyoshi Kato:
Transfer Learning for cytochrome P450 Isozyme Selectivity Prediction. 521-540 - Maria Elena Ochagavía, Jamilet Miranda
A Methodology Based on Molecular Interactions and Pathways to Find Candidate genes Associated to Diseases: its Application to Schizophrenia and Alzheimer's Disease. 541-557 - Roberto Chignola
Computational Challenges of Tumor Spheroid Modeling. 559-577 - Katarina M. Jørgensen, Pauline C. Haddow:
Visualization in Simulation Tools: Requirements and a Tool Specification to Support the Teaching of Dynamic Biological Processes. 579-595
Volume 9, Number 5, October 2011
- Xue-Wen Chen, Satoru Miyano
INTRODUCTION - The First IEEE Conference on Healthcare Informatics, Imaging, and Systems biology HISB'11. - Kwangmin Choi, Sun Kim:
Sequence-Based enzyme catalytic Domain Prediction Using Clustering and Aggregated Mutual Information Content. 597-611 - Dulce Calçada, Susana Vinga
Quantitative Modeling of the Saccharomyces cerevisiae Flr1 regulatory Network Using an S-System Formalism. 613-630 - Wenlong Tang, Hongbao Cao, Junbo Duan, Yu-Ping Wang:
A Compressed Sensing Based Approach for Subtyping of Leukemia from gene Expression Data. 631-645 - Kaushal Desai, David Brott, Xiaohua Hu, Anastasia Christianson:
A Systems Biology Approach for Detecting Toxicity-Related Hotspots inside protein Interaction Networks. 647-662
Volume 9, Number 6, December 2011
- Limsoon Wong
Introduction - Some New Results and Tools for Protein Function Prediction, RNA Target Site Prediction, Genotype Calling, Environmental Genomics, and More. - Jingyan Wang, Yongping Li:
Sequential Linear Neighborhood Propagation for Semi-Supervised protein Function Prediction. 663-679 - Marco A. Alvarez, Changhui Yan:
A Graph-Based Semantic Similarity Measure for the gene Ontology. 681-695 - Unyanee Poolsap, Yuki Kato
Using binding Profiles to Predict binding sites of Target RNAs. 697-713 - Bilin Fu, Jin Xu:
A New genotype calling Method for Affymetrix SNP Arrays. 715-728 - Md. Shaik Sadi, Fei-Ching Kuo, Joshua Wing Kei Ho
Verification of phylogenetic Inference Programs Using Metamorphic Testing. 729-747 - Markus E. Nebel, Sebastian Wild
Jaguc - a Software package for Environmental Diversity Analyses. 749-773 - Yukun Wu, Le Zhang
Comparison of Two Academic Software packages for Analyzing Two-Dimensional gel Images. 775-794 - Ameya Deo, Jessica Carlsson
How to Choose a Normalization Strategy for miRNA Quantitative Real-Time (qPCR) Arrays. 795-812
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