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International Journal of Bioinformatics Research and Applications (IJBRA), Volume 6
Volume 6, Number 1, 2010
- Yunho Jang, Xiu-Feng Wan:
Development of Chemical Bond based Elastic Network Model and its application in identifying functional motions in H5N1 highly pathogenic avian influenza viruses. 1-11 - Ganqiang Liu, Min Ding, Haiyun Wang, Jinyan Huang, Qing Jing, Bairong Shen:
Pathway analysis of microRNAs in mouse heart development. 12-20 - Vinhthuy Phan, Allen Thomas, Kriangsiri Malasri, Carrie Hayes Sutter
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Stability of RNA structural motifs and its influence on editing efficiency by adenosine deaminases. 21-36 - Javid Taheri, Albert Y. Zomaya
RBT-L: A location based approach for solving the Multiple Sequence Alignment problem. 37-57 - Juan Liu, Lian Wang, Shanfeng Zhu:
SVR-PAIRWISE method to predict MHC-II binding peptides. 58-68 - Quan Zou
DuplexFinder: Predicting the miRNA - miRNA* duplex from the animal precursors. 69-81 - Svetlana Torgasin, Karl-Heinz Zimmermann:
Algorithm for thermodynamically based prediction of DNA/DNA cross-hybridisation. 82-97
Volume 6, Number 2, 2010
- Roger L. Chang
Deterministic graph-theoretic algorithm for detecting modules in biological interaction networks. 101-119 - David A. McClellan
Assessing and improving the accuracy of detecting protein adaptation with the TreeSAAP analytical software. 120-133 - Petr Danecek, Catherine H. Schein
Flavitrack analysis of the structure and function of West Nile non-structural proteins. 134-146 - Abanish Singh, Umeshkumar Keswani, David Levine, Cédric Feschotte, Nikola Stojanovic:
An algorithm for the reconstruction of consensus sequences of ancient segmental duplications and transposon copies in eukaryotic genomes. 147-162 - TuShun R. Powers, Selene M. Virk, Elba E. Serrano:
Strategies for enhanced annotation of a microarray probe set. 163-178 - Sumeet Dua, Pradeep Chowriappa, Alan E. Alex:
Ranking through integration of protein-similarity for identification of cell-cyclic genes. 179-190 - Mona Soliman Habib, Jugal Kalita:
Scalable biomedical Named Entity Recognition: investigation of a database-supported SVM approach. 191-208 - Stephen O. Opiyo, Etsuko N. Moriyama:
Mining Cytochrome b561 proteins from plant genomes. 209-221
Volume 6, Number 3, 2010
- Rakesh Kumar Shardiwal, S. S. Sohrab:
A more elaborative way to check codon quality: an open source program. 223-229 - Vipan Kumar Sohpal
MEGA biocentric software for sequence and phylogenetic analysis: a review. 230-240 - Vibhu Ranjan Prasad, Bhumi Nath Tripathi
Distinct role of non-covalent interactions to the function and structural stability of glutaredoxins: a multifunctional redox protein. 241-259 - Michael Arock, Srinivasulu Reddy
A parallel combinatorial algorithm for subtle motifs. 260-269 - Hisham Al-Mubaid
A text-mining technique for extracting gene-disease associations from the biomedical literature. 270-286 - Amit Kumar
Characterisation of simple sequence repeats from human ESTs and creation of a comprehensive data base. 287-295 - Mingjun Song, Sanguthevar Rajasekaran:
A greedy algorithm for gene selection based on SVM and correlation. 296-307 - Zengti Li, Suogang Gao, Hongjie Du, Yan Shi, Weili Wu:
New algebraic constructions for pooling design in DNA library screening. 308-322
Volume 6, Number 4, 2010
- Bradley M. Broom, Erik P. Sulman
Bagged gene shaving for the robust clustering of high-throughput data. 326-343 - Manik Dhawan, Sudarshan Selvaraja, Zhong-Hui Duan
Application of committee kNN classifiers for gene expression profile classification. 344-352 - Yinglei Lai:
Differential expression analysis of Digital Gene Expression data: RNA-tag filtering, comparison of t-type tests and their genome-wide co-expression based adjustments. 353-365 - Fangrui Ma, Jitender S. Deogun:
Multiple genome alignment based on longest path in directed acyclic graphs. 366-383 - Suzette Stoutenburg, Jugal Kalita, Kaily Ewing, Lisa Hines:
Scaling alignment of large ontologies. 384-401 - Younhee Ko, ChengXiang Zhai, Sandra L. Rodriguez-Zas:
Discovery of gene network variability across samples representing multiple classes. 402-417 - Mahua Bhattacharya
Identification of tiny and large calcification in breast: a study on mammographic image analysis. 418-434
Volume 6, Number 5, 2010
- Jianjun Yan, Xiaojing Shen, Yiqin Wang, Fufeng Li, Chunming Xia, Rui Guo, Chunfeng Chen, Qingwei Shen:
Objective research of auscultation signals in Traditional Chinese Medicine based on wavelet packet energy and Support Vector Machine. 435-448 - Haixin Ai, Fangliang Zheng, Chunyu Zhu, Tingting Sun, Li Zhang, Xue Liu, Xuejiao Li, Guangyu Zhu, Hongsheng Liu:
Discovery of novel influenza inhibitors targeting the interaction of dsRNA with the NS1 protein by structure-based virtual screening. 449-460 - Xinrong Lv, Hua Zou:
Application of fuzzy connectedness in 3D blood vessel extraction. 461-471 - G. Sudha Sadasivam
A novel approach to Multiple Sequence Alignment using hadoop data grids. 472-483 - Yuemin Liu, August A. Gallo, Rakesh K. Bajpai, Andrei Chistoserdov, Andrew T. Nelson, Leah N. Segura, Wu Xu
The diversity and molecular modelling analysis of B12-dependent and B12-independent glycerol dehydratases. 484-507 - M. Ruhul Amin
Prediction of the post-translational modification sites on dengue virus E protein and deciphering their role in pathogenesis. 508-521 - Lalit Ponnala:
Detecting slow-translating regions in E.coli. 522-530
Volume 6, Number 6, 2010
- Jayant Mishra
Ingenuity in pattern recognition: a novel bioinformatics approach towards lung cancer identification. 531-541 - Thomas K. F. Wong, Tak Wah Lam
Improving the accuracy of signal transduction pathway construction using level-2 neighbours. 542-555 - R. Sumi Pandian, K. Hemavathi, R. Jayapradha, R. Seenivasagam:
In-silico analysis and QSAR studies of tacrine hybrids with ubiquitin ligase on Alzheimer's disease. 556-570 - Russell L. Malmberg
RNApasta: a tool for analysis of RNA structural alignments. 571-583 - Daniel P. Gaile, Lori A. Shepherd, Andrew E. Bruno, Song Liu, Carl D. Morrison, Lara E. Sucheston, Jeffrey C. Miecznikowski:
iGenomicViewer: R package for visualisation of high dimension genomic data. 584-593 - Gábor Iván, Zoltan Szabadka, Vince Grolmusz
Cysteine and tryptophan anomalies found when scanning all the binding sites in the Protein Data Bank. 594-608 - Muhammed S. Al-Mulhem:
Multithreaded parsing for predicting RNA secondary structures. 609-621 - ChangKug Kim, Jung-Sook Lee, UngHan Yoon, GangSeob Lee, HwanKi Lee, Ji-Weon Choi:
Computational identification of genetic markers for selecting genes in rice and Chinese cabbage. 622-627 - Blaise Hanczar, Corneliu Henegar
Exploring interaction measures to identify informative pairs of genes. 628-642
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