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Frontiers in Neuroinformatics, Volume 12
Volume 12, 2018
- Hyemin Han
, Joonsuk Park:
Using SPM 12's Second-Level Bayesian Inference Procedure for fMRI Analysis: Practical Guidelines for End Users. 1 - Jakob Jordan
Extremely Scalable Spiking Neuronal Network Simulation Code: From Laptops to Exascale Computers. 2 - Yueying Zhou
Simultaneous Estimation of Low- and High-Order Functional Connectivity for Identifying Mild Cognitive Impairment. 3 - Quanying Liu
Detecting Large-Scale Brain Networks Using EEG: Impact of Electrode Density, Head Modeling and Source Localization. 4 - Jaeyoung Shin
A Ternary Hybrid EEG-NIRS Brain-Computer Interface for the Classification of Brain Activation Patterns during Mental Arithmetic, Motor Imagery, and Idle State. 5 - Ján Antolík
Arkheia: Data Management and Communication for Open Computational Neuroscience. 6 - Naoki Masuda
Clustering Coefficients for Correlation Networks. 7 - Siva Venkadesh
Evolving Simple Models of Diverse Intrinsic Dynamics in Hippocampal Neuron Types. 8 - Jacob Huth, Timothée Masquelier
Convis: A Toolbox to Fit and Simulate Filter-Based Models of Early Visual Processing. 9 - Jason S. Sherfey
DynaSim: A MATLAB Toolbox for Neural Modeling and Simulation. 10 - Ai-Ling Hsu
IClinfMRI Software for Integrating Functional MRI Techniques in Presurgical Mapping and Clinical Studies. 11 - Nicolas P. Rougier
A Density-Driven Method for the Placement of Biological Cells Over Two-Dimensional Manifolds. 12 - Ignacio Arganda-Carreras
A Statistically Representative Atlas for Mapping Neuronal Circuits in the Drosophila Adult Brain. 13 - Jason S. Rothman
NeuroMatic: An Integrated Open-Source Software Toolkit for Acquisition, Analysis and Simulation of Electrophysiological Data. 14 - Hojeong Kim, Minjung Kim:
PyMUS: Python-Based Simulation Software for Virtual Experiments on Motor Unit System. 15 - Svenn-Arne Dragly, Milad Hobbi Mobarhan, Mikkel E. Lepperød, Simen Tennøe, Marianne Fyhn, Torkel Hafting, Anders Malthe-Sørenssen:
Experimental Directory Structure (Exdir): An Alternative to HDF5 Without Introducing a New File Format. 16 - Bao Ge, Xiang Li
A Dictionary Learning Approach for Signal Sampling in Task-Based fMRI for Reduction of Big Data. 17 - Lealem Mulugeta, Andrew Drach, Ahmet Erdemir, C. Anthony Hunt
Credibility, Replicability, and Reproducibility in Simulation for Biomedicine and Clinical Applications in Neuroscience. 18 - Stavros I. Dimitriadis, Avraam D. Marimpis
Enhancing Performance and Bit Rates in a Brain-Computer Interface System With Phase-to-Amplitude Cross-Frequency Coupling: Evidences From Traditional c-VEP, Fast c-VEP, and SSVEP Designs. 19 - Tiina Manninen
Challenges in Reproducibility, Replicability, and Comparability of Computational Models and Tools for Neuronal and Glial Networks, Cells, and Subcellular Structures. 20 - Jens K. Boldsen, Thorbjørn S. Engedal, Salvador Pedraza
Better Diffusion Segmentation in Acute Ischemic Stroke Through Automatic Tree Learning Anomaly Segmentation. 21 - Ruben A. Tikidji-Hamburyan, Vikram K. Narayana, Zeki Bozkus, Tarek A. El-Ghazawi:
Corrigendum: Software for Brain Network Simulations: A Comparative Study. 22 - Dong Wen, Zhenhao Wei, Yanhong Zhou, Guolin Li, Xu Zhang, Wei Han:
Deep Learning Methods to Process fMRI Data and Their Application in the Diagnosis of Cognitive Impairment: A Brief Overview and Our Opinion. 23 - Francisco Naveros, Jesús Alberto Garrido, Richard R. Carrillo, Eduardo Ros, Niceto R. Luque:
Corrigendum: Event- and Time-Driven Techniques Using Parallel CPU-GPU Co-processing for Spiking Neural Networks. 24 - Hao Guo, Yao Li, Yong Xu, Yanyi Jin, Jie Xiang, Junjie Chen:
Resting-State Brain Functional Hyper-Network Construction Based on Elastic Net and Group Lasso Methods. 25 - Javaria Ashraf, Jamil Ahmad, Amjad Ali
Analyzing the Behavior of Neuronal Pathways in Alzheimer's Disease Using Petri Net Modeling Approach. 26 - Grzegorz M. Wójcik
New Protocol for Quantitative Analysis of Brain Cortex Electroencephalographic Activity in Patients With Psychiatric Disorders. 27 - Anthony L. Vaccarino, Moyez Dharsee, Stephen C. Strother, Don Aldridge, Stephen R. Arnott, Brendan Behan, Costas Dafnas, Fan Dong, Kenneth Edgecombe, Rachad El-Badrawi, Khaled El Emam, Tom Gee, Susan G. Evans, Mojib Javadi, Francis Jeanson, Shannon Lefaivre, Kristen Lutz, F. Chris MacPhee, Jordan Mikkelsen, Tom Mikkelsen, Nicholas Mirotchnick, Tanya Schmah, Christa M. Studzinski, Donald T. Stuss, Elizabeth Theriault, Kenneth R. Evans:
Brain-CODE: A Secure Neuroinformatics Platform for Management, Federation, Sharing and Analysis of Multi-Dimensional Neuroscience Data. 28 - Luis G. Hernández
EEG-Based Detection of Braking Intention Under Different Car Driving Conditions. 29 - Frederic von Wegner
Information-Theoretical Analysis of EEG Microstate Sequences in Python. 30 - Guilin Meng, Xiulin Meng, Xiaoye Ma, Gengping Zhang, Xiaolin Hu, Aiping Jin, Yanxin Zhao, Xueyuan Liu:
Application of Ferulic Acid for Alzheimer's Disease: Combination of Text Mining and Experimental Validation. 31 - Christian Nowke, Sandra Diaz-Pier
Toward Rigorous Parameterization of Underconstrained Neural Network Models Through Interactive Visualization and Steering of Connectivity Generation. 32 - Soheil Keshmiri
Differential Entropy Preserves Variational Information of Near-Infrared Spectroscopy Time Series Associated With Working Memory. 33 - Jakob Jordan, Tammo Ippen, Moritz Helias, Itaru Kitayama, Mitsuhisa Sato, Jun Igarashi
Corrigendum: Extremely Scalable Spiking Neuronal Network Simulation Code: From Laptops to Exascale Computers. 34 - Manhua Liu, Danni Cheng, Weiwu Yan, Alzheimer's Disease Neuroimaging Initiative:
Classification of Alzheimer's Disease by Combination of Convolutional and Recurrent Neural Networks Using FDG-PET Images. 35 - Stephen R. Pfohl
Unraveling the Complexity of Amyotrophic Lateral Sclerosis Survival Prediction. 36 - Muhammad Ahmad Kamran, Malik M. Naeem Mannan
Differential Path-Length Factor's Effect on the Characterization of Brain's Hemodynamic Response Function: A Functional Near-Infrared Study. 37 - Nisha A. Viswan
FindSim: A Framework for Integrating Neuronal Data and Signaling Models. 38 - Hosung Kim, Benoît Caldairou, Andrea Bernasconi, Neda Bernasconi:
Multi-Template Mesiotemporal Lobe Segmentation: Effects of Surface and Volume Feature Modeling. 39 - Pierre Deman, Manik Bhattacharjee
IntrAnat Electrodes: A Free Database and Visualization Software for Intracranial Electroencephalographic Data Processed for Case and Group Studies. 40 - Adam J. H. Newton, Robert A. McDougal, Michael L. Hines, William W. Lytton:
Using NEURON for Reaction-Diffusion Modeling of Extracellular Dynamics. 41 - Si-Baek Seong, Chongwon Pae
Geometric Convolutional Neural Network for Analyzing Surface-Based Neuroimaging Data. 42 - Elena Navarro
Adaptive, Multisensorial, Physiological and Social: The Next Generation of Telerehabilitation Systems. 43 - Antonio Cerasa
Exoskeleton-Robot Assisted Therapy in Stroke Patients: A Lesion Mapping Study. 44 - Lucia Rita Quitadamo
EPINETLAB: A Software for Seizure-Onset Zone Identification From Intracranial EEG Signal in Epilepsy. 45 - Robin Pauli, Philipp Weidel, Susanne Kunkel
Reproducing Polychronization: A Guide to Maximizing the Reproducibility of Spiking Network Models. 46 - Zbigniew Jedrzejewski-Szmek, Karina P. Abrahao
Parameter Optimization Using Covariance Matrix Adaptation - Evolutionary Strategy (CMA-ES), an Approach to Investigate Differences in Channel Properties Between Neuron Subtypes. 47 - Ping He, Xiaohua Xu, Han Zhang, Gang Li
Spatiotemporal Analysis of Developing Brain Networks. 48 - Simen Tennøe, Geir Halnes, Gaute T. Einevoll:
Uncertainpy: A Python Toolbox for Uncertainty Quantification and Sensitivity Analysis in Computational Neuroscience. 49 - Inga Blundell, Dimitri Plotnikov, Jochen M. Eppler, Abigail Morrison
Automatically Selecting a Suitable Integration Scheme for Systems of Differential Equations in Neuron Models. 50 - Emi Satake, Kei Majima
Sparse Ordinal Logistic Regression and Its Application to Brain Decoding. 51 - Kaibin Xu, Yong Liu
BRANT: A Versatile and Extendable Resting-State fMRI Toolkit. 52 - Diego Castillo-Barnes
Robust Ensemble Classification Methodology for I123-Ioflupane SPECT Images and Multiple Heterogeneous Biomarkers in the Diagnosis of Parkinson's Disease. 53 - Na Zhao, Li-Xia Yuan
Intra- and Inter-Scanner Reliability of Voxel-Wise Whole-Brain Analytic Metrics for Resting State fMRI. 54 - Harshvardhan Gazula, Bradley T. Baker, Eswar Damaraju, Sergey M. Plis, Sandeep R. Panta, Rogers F. Silva
Decentralized Analysis of Brain Imaging Data: Voxel-Based Morphometry and Dynamic Functional Network Connectivity. 55 - Li Dong, Cheng Luo
Neuroscience Information Toolbox: An Open Source Toolbox for EEG-fMRI Multimodal Fusion Analysis. 56 - Geng Chen, Bin Dong, Yong Zhang, Weili Lin, Dinggang Shen, Pew-Thian Yap:
Angular Upsampling in Infant Diffusion MRI Using Neighborhood Matching in x-q Space. 57 - Yang Li, Jingyu Liu
Learning Brain Connectivity Sub-networks by Group- Constrained Sparse Inverse Covariance Estimation for Alzheimer's Disease Classification. 58 - Stavros I. Dimitriadis, Lisa M. Brindley, Lisa H. Evans
A Novel, Fast, Reliable, and Data-Driven Method for Simultaneous Single-Trial Mining and Amplitude - Latency Estimation Based on Proximity Graphs and Network Analysis. 59 - Xia-an Bi, Qin Jiang, Qi Sun, Qing Shu, Yingchao Liu:
Analysis of Alzheimer's Disease Based on the Random Neural Network Cluster in fMRI. 60 - Hidetoshi Ikeno
A Segmentation Scheme for Complex Neuronal Arbors and Application to Vibration Sensitive Neurons in the Honeybee Brain. 61 - Kai Qiao, Chi Zhang
Accurate Reconstruction of Image Stimuli From Human Functional Magnetic Resonance Imaging Based on the Decoding Model With Capsule Network Architecture. 62 - Kaori L. Ito
Pipeline for Analyzing Lesions After Stroke (PALS). 63 - Thomas Funck
APPIAN: Automated Pipeline for PET Image Analysis. 64 - Benjamin Wittevrongel
Decoding Steady-State Visual Evoked Potentials From Electrocorticography. 65 - Hui-Ling Chan
Challenges and Future Perspectives on Electroencephalogram-Based Biometrics in Person Recognition. 66 - Hazem Toutounji
Detecting Multiple Change Points Using Adaptive Regression Splines With Application to Neural Recordings. 67 - Inga Blundell, Romain Brette
Code Generation in Computational Neuroscience: A Review of Tools and Techniques. 68 - Qiang Zheng, Yihong Wu, Yong Fan:
Integrating Semi-supervised and Supervised Learning Methods for Label Fusion in Multi-Atlas Based Image Segmentation. 69 - Mayssa Soussia, Islem Rekik:
Unsupervised Manifold Learning Using High-Order Morphological Brain Networks Derived From T1-w MRI for Autism Diagnosis. 70 - Pantea Moghimi, Kelvin O. Lim
Data Driven Classification Using fMRI Network Measures: Application to Schizophrenia. 71 - Denis Volk, Igor Dubinin, Alexandra Myasnikova, Boris S. Gutkin
Generalized Cross-Frequency Decomposition: A Method for the Extraction of Neuronal Components Coupled at Different Frequencies. 72 - Grzegorz M. Wójcik
Mapping the Human Brain in Frequency Band Analysis of Brain Cortex Electroencephalographic Activity for Selected Psychiatric Disorders. 73 - Elizabeth Perez Reilly, Jeffrey S. Garretson, William R. Gray Roncal, Dean M. Kleissas, Brock A. Wester, Mark A. Chevillet, Matthew J. Roos:
Neural Reconstruction Integrity: A Metric for Assessing the Connectivity Accuracy of Reconstructed Neural Networks. 74 - Johanna Senk
VIOLA - A Multi-Purpose and Web-Based Visualization Tool for Neuronal-Network Simulation Output. 75 - Saúl J. Ruiz-Gómez
Measuring Alterations of Spontaneous EEG Neural Coupling in Alzheimer's Disease and Mild Cognitive Impairment by Means of Cross-Entropy Metrics. 76 - David J. Rotenberg, Qing Chang, Natalia Potapova, Andy Wang, Marcia Hon, Marcos Sanches, Nikola Bogetic, Nathan Frias, Tommy Liu, Brendan Behan, Rachad El-Badrawi, Stephen C. Strother, Susan G. Evans, Jordan Mikkelsen, Tom Gee, Fan Dong, Stephen R. Arnott, Shuai Laing, Moyez Dharsee, Anthony L. Vaccarino, Mojib Javadi, Kenneth R. Evans, Damian Jankowicz:
The CAMH Neuroinformatics Platform: A Hospital-Focused Brain-CODE Implementation. 77 - Piotr Wierzgala, Dariusz Zapala
Most Popular Signal Processing Methods in Motor-Imagery BCI: A Review and Meta-Analysis. 78 - Vyacheslav A. Demin, Dmitry V. Nekhaev:
Recurrent Spiking Neural Network Learning Based on a Competitive Maximization of Neuronal Activity. 79 - Gorka Epelde
Web-Based Interfaces for Virtual C. elegans Neuron Model Definition, Network Configuration, Behavioral Experiment Definition and Experiment Results Visualization. 80 - Guido Trensch, Robin Gutzen
Rigorous Neural Network Simulations: A Model Substantiation Methodology for Increasing the Correctness of Simulation Results in the Absence of Experimental Validation Data. 81 - Evgeniy Bart, Jay Hegdé:
Deep Synthesis of Realistic Medical Images: A Novel Tool in Clinical Research and Training. 82 - Vinit Shah, Eva Von Weltin
The Temple University Hospital Seizure Detection Corpus. 83 - Csaba Erö, Marc-Oliver Gewaltig, Daniel Keller
A Cell Atlas for the Mouse Brain. 84 - Zia Mohaddes, Samir Das, Rida Abou-Haidar, Mouna Safi-Harb, David Blader, Jessica Callegaro, Charlie Henri-Bellemare, Jingla-Fri Tunteng, Leigh Evans, Tara Campbell, Derek Lo, Pierre-Emmanuel Morin, Victor Whitehead, Howard Chertkow, Alan C. Evans
National Neuroinformatics Framework for Canadian Consortium on Neurodegeneration in Aging (CCNA). 85 - Dominique Duncan
Analytic Tools for Post-traumatic Epileptogenesis Biomarker Search in Multimodal Dataset of an Animal Model and Human Patients. 86 - Srinivas Gorur-Shandilya
Xolotl: An Intuitive and Approachable Neuron and Network Simulator for Research and Teaching. 87 - Alice Geminiani
Complex Dynamics in Simplified Neuronal Models: Reproducing Golgi Cell Electroresponsiveness. 88 - Hananel Hazan
BindsNET: A Machine Learning-Oriented Spiking Neural Networks Library in Python. 89 - Robin Gutzen, Michael von Papen, Guido Trensch, Pietro Quaglio, Sonja Grün, Michael Denker:
Reproducible Neural Network Simulations: Statistical Methods for Model Validation on the Level of Network Activity Data. 90 - Samir Das, Xavier Lecours-Boucher, Christine Rogers
Integration of "omics" Data and Phenotypic Data Within a Unified Extensible Multimodal Framework. 91 - Espen Hagen, Solveig Næss, Torbjørn V. Ness
Multimodal Modeling of Neural Network Activity: Computing LFP, ECoG, EEG, and MEG Signals With LFPy 2.0. 92 - Jing Xiong
Mapping Histological Slice Sequences to the Allen Mouse Brain Atlas Without 3D Reconstruction. 93 - Arnaud Marcoux, Ninon Burgos
An Automated Pipeline for the Analysis of PET Data on the Cortical Surface. 94 - Mengni Zhou, Cheng Tian, Rui Cao, Bin Wang
Epileptic Seizure Detection Based on EEG Signals and CNN. 95 - Muhammad Ahmad Kamran, Malik M. Naeem Mannan
Initial-Dip Existence and Estimation in Relation to DPF and Data Drift. 96 - Robbert L. Harms
Robust and Fast Markov Chain Monte Carlo Sampling of Diffusion MRI Microstructure Models. 97 - Akinori Mitani, Takaki Komiyama
Real-Time Processing of Two-Photon Calcium Imaging Data Including Lateral Motion Artifact Correction. 98 - Yu-Chi Huang, Cheng-Te Wang, Ta-Shun Su, Kuo-Wei Kao, Yen-Jen Lin, Chao-Chun Chuang, Ann-Shyn Chiang, Chung-Chuan Lo:
A Single-Cell Level and Connectome-Derived Computational Model of the Drosophila Brain. 99 - Nikolai Smetanin, Ksenia Volkova, Stanislav Zabodaev, Mikhail A. Lebedev
NFBLab - A Versatile Software for Neurofeedback and Brain-Computer Interface Research. 100 - Ilaria Boscolo Galazzo
Arterial Spin Labeling Reveals Disrupted Brain Networks and Functional Connectivity in Drug-Resistant Temporal Epilepsy. 101 - Premika S. W. Boedhoe, Martijn W. Heymans, Lianne Schmaal
An Empirical Comparison of Meta- and Mega-Analysis With Data From the ENIGMA Obsessive-Compulsive Disorder Working Group. 102
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