Computer Methods and Programs in Biomedicine, Volume 242

Volume 242, December 2023

Section IV: Classification and interpretation

• 
  Cong Lee, Zhifang Liao, Yuanzhe Li, Qing-Quan Lai, Yingying Guo, Jing Huang, Shuting Li, Yi Wang, Ruizheng Shi:
  Placental MRI segmentation based on multi-receptive field and mixed attention separation mechanism. 107699

Section II: Biomedical signal and image processing methods

• 
  A. Chao-Ecija, Marc Stefan Dawid-Milner:
  BaroWavelet: An R-based tool for dynamic baroreflex evaluation through wavelet analysis techniques. 107758

Diagnostics and Decision Support

• 
  Sara Domínguez-Rodríguez, Helena Liz-López, Ángel Panizo-LLedot, Álvaro Ballesteros, Ron Dagan, David Greenberg, Lourdes Gutiérrez, Pablo Rojo, Enrique Otheo, Juan Carlos Galán, Sara Villanueva, Sonsoles García, Pablo Mosquera, Alfredo Tagarro, Cinta Moraleda, David Camacho:
  Testing the performance, adequacy, and applicability of an artificial intelligence model for pediatric pneumonia diagnosis. 107765
• 
  Jing Li, Huayu Gao, Nanyan Shen, Di Wu, Lanyun Feng, Peng Hu:
  High-security automatic path planning of radiofrequency ablation for liver tumors. 107769

Section II: Biomedical signal and image processing methods

• 
  Shahabedin Nabavi, Hossein Simchi, Mohsen Ebrahimi Moghaddam, Ahmad Ali Abin, Alejandro F. Frangi:
  A generalised deep meta-learning model for automated quality control of cardiovascular magnetic resonance images. 107770

Section V: Others

• 
  Matthew R. Squires, Xiaohui Tao, Soman Elangovan, Raj Gururajan, Xujuan Zhou, Yuefeng Li, U. Rajendra Acharya:
  Identifying predictive biomarkers for repetitive transcranial magnetic stimulation response in depression patients with explainability. 107771

Section IV: Classification and interpretation

• 
  Xuan Zhang, Dixin Wang, Hongtong Wu, Jinlong Chao, Jitao Zhong, Hong Peng, Bin Hu:
  Vigilance estimation using truncated l1 distance kernel-based sparse representation regression with physiological signals. 107773

Section II: Biomedical signal and image processing methods

• 
  Shuping Sun, Wei Song, Yaonan Tong, Xu Li, Man Zhao, Qi Deng, Guangyu Liu, Zhi Liu, Chao Liu:
  A novel methodology for evaluation of S2 wide split via estimated parameters. 107777

Section III: Modelling & Simulation

• 
  Dario Carbonaro, Agnese Lucchetti, Alberto L. Audenino, Thomas Gries, Ted J. Vaughan, Claudio Chiastra:
  Multi-objective design optimization of bioresorbable braided stents. 107781

Section II: Biomedical signal and image processing methods

• 
  Weilin Chen, Rui Zhang, Yunfeng Zhang, Fangxun Bao, Haixia Lv, Longhao Li, Caiming Zhang:
  Pact-Net: Parallel CNNs and Transformers for medical image segmentation. 107782

Diagnostics and Decision Support

• 
  Beiji Zou, Yuting Ding, Jinxiu Li, Bo Yu, Xiaoyan Kui:
  TGRA-P: Task-driven model predicts 90-day mortality from ICU clinical notes on mechanical ventilation. 107783

Section II: Biomedical signal and image processing methods

• 
  Lipeng Ji, Zhonghao Wei, Jian Hao, Chunli Wang:
  An intelligent diagnostic method of ECG signal based on Markov transition field and a ResNet. 107784

Section III: Modelling & Simulation

• 
  Xudong Jiang, Guangyuan Xiang, Guanting Du, Xiaoqiang Li, Peng Wu, Xiaolong Du:
  A hemodynamic analysis of fenestrated physician-modified endograft repair for complicated aortic dissections involving the visceral arteries. 107785
• 
  Zhiyu Li, Gang Tao, Peng Wen, Baoxiang Ren:
  Experimental and finite element analysis of the generation mechanism of high impulse noise overpressure (caused by a recoilless weapon) at the bottom of the ear. 107786

Section V: Others

• 
  Rui Jesus, Luís Bastião Silva, Vitor Manuel Leitão de Sousa, Lina Carvalho, Dibet Garcia Gonzalez, João Carias, Carlos Costa:
  Personalizable AI platform for universal access to research and diagnosis in digital pathology. 107787
• 
  Maikel Maciel Rönnau, Tatiana W. Lepper, Luara N. Amaral, Pantelis V. Rados, Manuel M. Oliveira:
  A CNN-based approach for joint segmentation and quantification of nuclei and NORs in AgNOR-stained images. 107788

Section II: Biomedical signal and image processing methods

• 
  Xinhuan Sun, Wuchao Li, Bangkang Fu, Yunsong Peng, Junjie He, Lihui Wang, Tongyin Yang, Xue Meng, Jin Li, Jinjing Wang, Ping Huang, Rongpin Wang:
  TGMIL: A hybrid multi-instance learning model based on the Transformer and the Graph Attention Network for whole-slide images classification of renal cell carcinoma. 107789
• 
  Simone Garzia, Martino Andrea Scarpolini, Marilena Mazzoli, Katia Capellini, Angelo Monteleone, Filippo Cademartiri, Vincenzo Positano, Simona Celi:
  Coupling synthetic and real-world data for a deep learning-based segmentation process of 4D flow MRI. 107790
• 
  Hans Friedrich Stabenau, Jonathan W. Waks:
  BRAVEHEART: Open-source software for automated electrocardiographic and vectorcardiographic analysis. 107798

Section III: Modelling & Simulation

• 
  Chen Wu, Hangming Huang, Yongfang Liu, Lingchao Chen, Shuangquan Yu, Michael A. J. Moser, Wenjun Zhang, Zheng Fang, Bing Zhang:
  Optimal design of aperiodic tri-slot antennas for the conformal ablation of liver tumors using an experimentally validated MWA computer model. 107799

Section II: Biomedical signal and image processing methods

• 
  Amogh Subbakrishna Adishesha, Daniel J. Vanselow, Patrick J. La Rivière, Keith C. Cheng, Sharon X. Huang:
  Sinogram domain angular upsampling of sparse-view micro-CT with dense residual hierarchical transformer and attention-weighted loss. 107802

Section IV: Classification and interpretation

• 
  Pablo Ferri Borreda, Nekane Romero-Garcia, Rafael Badenes, David Lora-Pablos, Teresa García Morales, Agustín Gómez De La Camara, Juan M. García-Gómez, Carlos Sáez:
  Extremely missing numerical data in Electronic Health Records for machine learning can be managed through simple imputation methods considering informative missingness: A comparative of solutions in a COVID-19 mortality case study. 107803

Section II: Biomedical signal and image processing methods

• 
  Rong Sun, Long Wei, Xuewen Hou, Yang Chen, Baosan Han, Yuanzhong Xie, Shengdong Nie:
  Molecular-subtype guided automatic invasive breast cancer grading using dynamic contrast-enhanced MRI. 107804
• 
  Bahram Jafrasteh, Simón Pedro Lubián-López, Isabel Benavente-Fernández:
  A deep sift convolutional neural networks for total brain volume estimation from 3D ultrasound images. 107805

Section IV: Classification and interpretation

• 
  João Fonseca, Xiuyun Liu, Hélder P. Oliveira, Tânia Pereira:
  Mortality prediction using medical time series on TBI patients. 107806
• 
  Yun Xin Teoh, Alice Othmani, Khin Wee Lai, Siew-Li Goh, Juliana Usman:
  Stratifying knee osteoarthritis features through multitask deep hybrid learning: Data from the osteoarthritis initiative. 107807

Section V: Others

• 
  Dongqing Su, Yuqiang Xiong, Shiyuan Wang, Haodong Wei, Jiawei Ke, Honghao Li, Tao Wang, Yongchun Zuo, Lei Yang:
  Structural deep clustering network for stratification of breast cancer patients through integration of somatic mutation profiles. 107808

Section II: Biomedical signal and image processing methods

• 
  Shuxin Chen, Lijun Jiang, Feng Xu, Jiaojiao Pang, Chang Pan, Yuguo Chen, Jiali Wang, Ke Li:
  Electrical-mechanical dynamical coupling between electrocardiographic and photoplethysmographic signals during cardiopulmonary resuscitation. 107809

Section III: Modelling & Simulation

• 
  Miljan Milosevic, Vladimir Simic, Aleksandar V. Nikolic, Ning Shao, Chihiro Kawamura Hashimoto, Biana Godin, Fransisca Leonard, Xuewu Liu, Milos Kojic:
  Modeling critical interaction for metastasis between circulating tumor cells (CTCs) and platelets adhered to the capillary wall. 107810

Section II: Biomedical signal and image processing methods

• 
  Jakub Ceranka, Joris Wuts, Ophélye Chiabai, Frédéric Lecouvet, Jef Vandemeulebroucke:
  Computer-aided diagnosis of skeletal metastases in multi-parametric whole-body MRI. 107811
• 
  Saima Rathore, Muhammad Aksam Iftikhar, Ahmad Chaddad, Ashish Singh, Zeeshan Gillani, Ahmed Abdulkadir:
  Imaging phenotypes predict overall survival in glioma more accurate than basic demographic and cell mutation profiles. 107812

Section III: Modelling & Simulation

• 
  Jeff Bischoff, Mehul A. Dharia, Philippe Favre:
  A risk and credibility framework for in silico clinical trials of medical devices. 107813

Section II: Biomedical signal and image processing methods

• 
  Nicola Altini, Michele Rossini, Sándor Turkevi-Nagy, Francesco Pesce, Paola Pontrelli, Berardino Prencipe, Francesco Berloco, Surya Seshan, Jean-Baptiste Gibier, Aníbal Pedraza Dorado, Gloria Bueno, Licia Peruzzi, Mattia Rossi, Albino Eccher, Feifei Li, Adamantios Koumpis, Oya Beyan, Jonathan Barratt, Huy Quoc Vo, Chandra Mohan, Hien Van Nguyen, Pietro Antonio Cicalese, Angela Ernst, Loreto Gesualdo, Vitoantonio Bevilacqua, Jan Ulrich Becker:
  Performance and limitations of a supervised deep learning approach for the histopathological Oxford Classification of glomeruli with IgA nephropathy. 107814

Section III: Modelling & Simulation

• 
  Yutian Pu, Ziyuan Liu, Lin Ye, Yunxin Xia, Xiaoyong Chen, Kehao Wang, Barbara K. Pierscionek:
  The major influence of anterior and equatorial zonular fibres on the far-to-near accommodation revealed by a 3D pre-stressed model of the anterior eye. 107815

Section V: Others

• 
  Abhishek Singh Sambyal, Usma Niyaz, Narayanan C. Krishnan, Deepti R. Bathula:
  Understanding calibration of deep neural networks for medical image classification. 107816
• 
  Esteban Guerrero, Maitreyee Tewari, Panu Kalmi, Helena Lindgren:
  Forming We-intentions under breakdown situations in human-robot interactions. 107817

Section III: Modelling & Simulation

• 
  David Oks, Guillaume Houzeaux, Mariano Vázquez, Michael Neidlin, Cristóbal Samaniego:
  Effect of TAVR commissural alignment on coronary flow: A fluid-structure interaction analysis. 107818
• 
  Bella Vakulenko-Lagun, Colin G. Magdamo, Marie-Laure Charpignon, Bang Zheng, Mark W. Albers, Sudeshna Das:
  causalCmprsk: An R package for nonparametric and Cox-based estimation of average treatment effects in competing risks data. 107819
• 
  Kiyoshi Ichihara, Teppei Yamashita, Hiromi Kataoka, Shoichi Sato:
  Critical appraisal of two Box-Cox formulae for their utility in determining reference intervals by realistic simulation and extensive real-world data analyses. 107820

Section IV: Classification and interpretation

• 
  Abdullah Abdul Sattar Shaikh, M. S. Bhargavi, C. Pavan Kumar:
  Weighted aggregation through probability based ranking: An optimized federated learning architecture to classify respiratory diseases. 107821

Section II: Biomedical signal and image processing methods

• 
  Ruofan Wang, Jing Zhu, Yuqian Meng, Xuanhao Wang, Ruimin Chen, Kaiyue Wang, Chiye Li, Junhui Shi:
  Adaptive machine learning method for photoacoustic computed tomography based on sparse array sensor data. 107822

Section III: Modelling & Simulation

• 
  Giuseppe De Nisco, Maurizio Lodi Rizzini, Roberto Verardi, Claudio Chiastra, Alessandro Candreva, Gaetano de Ferrari, Fabrizio D'Ascenzo, Diego Gallo, Umberto Morbiducci:
  Modelling blood flow in coronary arteries: Newtonian or shear-thinning non-Newtonian rheology? 107823

Section II: Biomedical signal and image processing methods

• 
  Chih-Hao Liu, Li-Wei Fu, Homer H. Chen, Sheng-Lung Huang:
  Toward cell nuclei precision between OCT and H&E images translation using signal-to-noise ratio cycle-consistency. 107824
• 
  Giulia Debiasi, Ilaria Mazzonetto, Alessandra Bertoldo:
  The effect of processing pipelines, input images and age on automatic cortical morphology estimates. 107825

Diagnostics and Decision Support

• 
  Zizhou Wang, Lei Zhang, Xin Shu, Yan Wang, Yangqin Feng:
  Consistent representation via contrastive learning for skin lesion diagnosis. 107826

Section III: Modelling & Simulation

• 
  Yue Mei, Xuan Feng, Yun Jin, Rongyao Kang, XinYu Wang, Dongmei Zhao, Soham Ghosh, Corey P. Neu, Stephane Avril:
  Cell nucleus elastography with the adjoint-based inverse solver. 107827

Section II: Biomedical signal and image processing methods

• 
  Nargess Heydari Beni, Ning Jiang:
  Heartbeat detection from high-density EMG electrodes on the upper arm at different EMG intensity levels using Zephlet. 107828

Diagnostics and Decision Support

• 
  William Hoyos, José Aguilar, Mayra Raciny, Mauricio Toro:
  Case studies of clinical decision-making through prescriptive models based on machine learning. 107829

Section III: Modelling & Simulation

• 
  Jenny L. Diaz C., María F. Villa-Tamayo, Marcela Moscoso-Vasquez, Patricio Colmegna:
  Simulation-driven optimization of insulin therapy profiles in a commercial hybrid closed-loop system. 107830

Section II: Biomedical signal and image processing methods

• 
  Jingkun Wang, Haotian Sun, Ke Jiang, Weiwei Cao, Shuangqing Chen, Jianbing Zhu, Xiaodong Yang, Jian Zheng:
  CAPNet: Context attention pyramid network for computer-aided detection of microcalcification clusters in digital breast tomosynthesis. 107831
• 
  Bardia Khosravi, Pouria Rouzrokh, John P. Mickley, Shahriar Faghani, Kellen L. Mulford, Linjun Yang, A. Noelle Larson, Benjamin M. Howe, Bradley J. Erickson, Michael J. Taunton, Cody C. Wyles:
  Few-shot biomedical image segmentation using diffusion models: Beyond image generation. 107832

Section III: Modelling & Simulation

• 
  Aditi Iyer, Aditya P. Apte, Ethan Bendau, Maria Thor, Ishita Chen, Jacob Shin, Abraham J. Wu, Daniel Gomez, Andreas Rimner, Ellen Yorke, Joseph O. Deasy, Andrew Jackson:
  ROE (Radiotherapy Outcomes Estimator): An open-source tool for optimizing radiotherapy prescriptions. 107833

Diagnostics and Decision Support

• 
  Olzhas Mukhmetov, Yong Zhao, Aigerim Mashekova, Vasilios Zarikas, Eddie-Yin-Kwee Ng, Nurduman Aidossov:
  Physics-informed neural network for fast prediction of temperature distributions in cancerous breasts as a potential efficient portable AI-based diagnostic tool. 107834

Section III: Modelling & Simulation

• 
  Ludek Hyncík, Hana Cechová, Magdalena Jansová, Wenle Lv, Lucie Hájková Hympánová, Ladislav Krofta:
  In silico prediction of maximum perineal muscle strain during vaginal delivery by design of experiment. 107835

Section IV: Classification and interpretation

• 
  Lucio Marinelli, Corrado Cabona, Irene Pappalardo, Anna Bellini, Alessandra Ferrari, Elisa Micalizzi, Daniela Audenino, Flavio Villani:
  Tagging EEG features within exam reports to quickly generate databases for research purposes. 107836

Section III: Modelling & Simulation

• 
  Sandra Díaz-Seoane, Antonio Barreiro Blas, Alejandro F. Villaverde:
  Controllability and accessibility analysis of nonlinear biosystems. 107837

Diagnostics and Decision Support

• 
  Ying An, Guanglei Cai, Xianlai Chen, Lin Guo:
  PARSE: A personalized clinical time-series representation learning framework via abnormal offsets analysis. 107838

Section II: Biomedical signal and image processing methods

• 
  Daniela P. Schacherer, Markus D. Herrmann, David A. Clunie, Henning Höfener, William Clifford, William J. R. Longabaugh, Steven D. Pieper, Ron Kikinis, Andrey Fedorov, André Homeyer:
  The NCI Imaging Data Commons as a platform for reproducible research in computational pathology. 107839
• 
  Lucia Migliorelli, Lorenzo Scoppolini Massini, Michela Coccia, Laura Villani, Emanuele Frontoni, Stefano Squartini:
  A deep learning-based telemonitoring application to automatically assess oral diadochokinesis in patients with bulbar amyotrophic lateral sclerosis. 107840
• 
  Erwan Lecesne, Antoine Simon, Mireille Garreau, Gilles Barone-Rochette, Céline Fouard:
  Segmentation of cardiac infarction in delayed-enhancement MRI using probability map and transformers-based neural networks. 107841
• 
  Dengao Li, Juan Wang, Jicheng Yang, Jumin Zhao, Xiaotang Yang, Yanfen Cui, Kenan Zhang:
  RTAU-Net: A novel 3D rectal tumor segmentation model based on dual path fusion and attentional guidance. 107842

Section III: Modelling & Simulation

• 
  Aleksandar Anzel, Dominik Heider, Georges Hattab:
  Interactive polar diagrams for model comparison. 107843
• 
  Maryam Samavaki, Yusuf Oluwatoki Yusuf, Arash Zarrin Nia, Santtu Söderholm, Joonas Lahtinen, Fernando Galaz Prieto, Sampsa Pursiainen:
  Pressure-Poisson equation in numerical simulation of cerebral arterial circulation and its effect on the electrical conductivity of the brain. 107844

Diagnostics and Decision Support

• 
  Chung-Hao Wu, Hsuan-Wen Yu, Tsung-Hung Tsai, Henry Horng-Shing Lu:
  Dynamically Synthetic Images for Federated Learning of medical images. 107845
• 
  Xiaoben Jiang, Yu Zhu, Yatong Liu, Nan Wang, Lei Yi:
  MC-DC: An MLP-CNN Based Dual-path Complementary Network for Medical Image Segmentation. 107846

Section II: Biomedical signal and image processing methods

• 
  Sofía Ruiz de Gauna, José Julio Gutiérrez, Camilo Leonardo Sandoval, James K. Russell, Izaskun Azcarate, Jose Antonio Urigüen, Digna M. González-Otero, Mohamud Ramzan Daya:
  Characterization of mechanical properties of adult chests during pre-hospital manual chest compressions through a simple viscoelastic model. 107847

Section III: Modelling & Simulation

• 
  Datao Xu, Huiyu Zhou, Wenjing Quan, Gusztáv Fekete, Julien S. Baker, Yaodong Gu:
  Adaptive neuro-fuzzy inference system model driven by the non-negative matrix factorization-extracted muscle synergy patterns to estimate lower limb joint movements. 107848

Section II: Biomedical signal and image processing methods

• 
  Shanshan Xu, Lianhong Duan, Yang Zhang, Zhicheng Zhang, Tiansheng Sun, Lixia Tian:
  Graph- and transformer-guided boundary aware network for medical image segmentation. 107849
• 
  Vincenzo Giacalone, Vittoria Civilini, Alberto L. Audenino, Mara Terzini:
  Quantifying mesh textile and effective porosities: A straightforward image analysis procedure for morphological analysis of surgical meshes. 107850

Section III: Modelling & Simulation

• 
  In-Hwan Kim, Junsik Kim, Jiheon Jeong, Jae-Woo Park, Kanggil Park, Jin-Hyoung Cho, Mihee Hong, Kyung-Hwa Kang, Minji Kim, Su-Jung Kim, Yoon-Ji Kim, Sang-Jin Sung, Young Ho Kim, Sung-Hoon Lim, Seung-Hak Baek, Namkug Kim:
  Orthognathic surgical planning using graph CNN with dual embedding module: External validations with multi-hospital datasets. 107853

Section II: Biomedical signal and image processing methods

• 
  Andreia S. Gaudêncio, Hamed Azami, João M. R. Cardoso, Pedro G. Vaz, Anne Humeau-Heurtier:
  Bidimensional ensemble entropy: Concepts and application to emphysema lung computerized tomography scans. 107855
• 
  Salim Rukhsar, Anil Kumar Tiwari:
  Lightweight convolution transformer for cross-patient seizure detection in multi-channel EEG signals. 107856
• 
  Emilie Pattyn, Nattapong Thammasan, Erika Lutin, D. Tourolle, Alex Van Kraaij, Ilkka Kosunen, Walter De Raedt, Chris Van Hoof:
  Simulation of ambulatory electrodermal activity and the handling of low-quality segments. 107859

Section III: Modelling & Simulation

• 
  Jordi Llopis-Lorente, Samuel Baroudi, Kévin Koloskoff, Maria Teresa Mora, Matthieu Basset, Lucía Romero, Sylvain Benito, Frédéric Dayan, Javier Saiz, Beatriz Trénor:
  Combining pharmacokinetic and electrophysiological models for early prediction of drug-induced arrhythmogenicity. 107860
• 
  Yili Feng, Bao Li, Ruisen Fu, Yaodong Hao, Tongna Wang, Huanmei Guo, Junling Ma, Gerold Baier, Haisheng Yang, Quansheng Feng, Liyuan Zhang, Youjun Liu:
  A simplified coronary model for diagnosis of ischemia-causing coronary stenosis. 107862
• 
  Ruoxun Fan, Xiufang Yang, Jie Liu, Zhengbin Jia:
  Prediction of the critical energy release rate for rat femoral cortical bone structure under different failure conditions. 107873