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Briefings in Bioinformatics, Volume 5
Volume 5, Number 1, March 2004
- Russ B. Altman:
Editorial: Building successful biological databases. 4
- Selina S. Dwight, Rama Balakrishnan, Karen R. Christie
, Maria C. Costanzo, Kara Dolinski
Saccharomyces genome database: Underlying principles and organisation. 9-22 - Philip E. Bourne, John D. Westbrook, Helen M. Berman:
The Protein Data Bank and lessons in data management. 23-30 - Ewan Birney
Biological database design and implementation. 31-38 - Amos Bairoch
Swiss-Prot: Juggling between evolution and stability. 39-58
- Tim Clark
Globally distributed object identification for biological knowledgebases. 59-70 - Lisa J. Mullan:
Tutorial section: Domains and motifs - proteins in bite-sized chunks. 71-74 - I. King Jordan:
Abstracts. 75-81 - Helge-Friedrich Tippmann:
Software review: Analysis for free: Comparing programs for sequence analysis. 82-87 - Paul Grosu, Eitan Rubin, Jaime Prilusky, Lakshmanan Iyer:
News section. 88-92
Volume 5, Number 2, June 2004
- Charlie Hodgman
Editorial: The informatics of post-translational modification and its implications for systems biology. 104-106 - Christian Schönbach
From masking repeats to identifying functional repeats in the mouse transcriptome. 107-117 - Rajeev K. Azad, Mark Borodovsky:
Probabilistic methods of identifying genes in prokaryotic genomes: Connections to the HMM theory. 118-130 - Igor B. Rogozin, Kira S. Makarova, Yuri I. Wolf
Computational approaches for the analysis of gene neighbourhoods in prokaryotic genomes. 131-149 - Sudhir Kumar
MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment. 150-163 - Claus-Wilhelm von der Lieth, Andreas Bohne-Lang
Bioinformatics for glycomics: Status, methods, requirements and perspectives. 164-178 - Lesheng Kong
Delineation of modular proteins: Domain boundary prediction from sequence information. 179-192
- Lisa J. Mullan:
Jemboss reloaded. 193-195 - I. King Jordan:
Abstracts. 196-203 - Josiah Altschuler, Marilyn Safran, Doron Lancet, Lakshmanan Iyer:
News section. 204-205
Volume 5, Number 3, September 2004
- Martin J. Bishop:
Editorial. 216 - Giulio Pavesi
In silico representation and discovery of transcription factor binding sites. 217-236 - Mihai Pop
Comparative genome assembly. 237-248 - Shintaro Katayama
Integrated analysis of the genome and the transcriptome by FANTOM. 249-258 - Corrado Priami, Paola Quaglia
Modelling the dynamics of biosystems. 259-269 - Johannes J. Mandel, Niall M. Palfreyman
Representing bioinformatics causality. 270-283 - Lisa J. Mullan:
'We are gathered here today' - EST cluster databases. 284-286
Volume 5, Number 4, December 2004
- Alan J. Bleasby:
Editorial: Stable funding for open source software? 312 - Jan Ihmels, Sven Bergmann:
Challenges and prospects in the analysis of large-scale gene expression data. 313-327 - Zheng Rong Yang:
Biological applications of support vector machines. 328-338 - Jamie Stevens:
Computational aspects of host-parasite phylogenies. 339-349 - Sonia Cattley:
A review of bioinformatics degrees in Australia. 350-354 - Jakob C. Mueller:
Linkage disequilibrium for different scales and applications. 355-364 - Lisa J. Mullan:
Genomes, genomes everywhere - but where to browse? 365-369 - Guoqing Lu, Etsuko N. Moriyama:
Vector NTI, a balanced all-in-one sequence analysis suite. 378-388 - Yossi Rosenberg, Ron Unger:
The Made-In-Israel Bioinformatics Portal. 389-390
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