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Biosystems, Volume 109
Volume 109, Number 1, July 2012
- Martyn Amos:
Editorial. 1
- Patrick Wagler, Uwe Tangen, Thomas Maeke, John S. McCaskill
:
Field programmable chemistry: Integrated chemical and electronic processing of informational molecules towards electronic chemical cells. 2-17 - Philip H. King, Josephine C. Corsi, Ben-Hong Pan, Hywel Morgan
Towards molecular computing: Co-development of microfluidic devices and chemical reaction media. 18-23 - Pasquale Stano
Semi-synthetic minimal cells as a tool for biochemical ICT. 24-34 - Jack C. Chaplin
Implementing conventional logic unconventionally: Photochromic molecular populations as registers and logic gates. 35-51
- Ángel Goñi-Moreno
Continuous computation in engineered gene circuits. 52-56 - Imad Hoteit, Nawwaf Kharma, Luc Varin:
Computational simulation of a gene regulatory network implementing an extendable synchronous single-input delay flip-flop. 57-71 - Andrew Adamatzky, Julian Holley, Peter Dittrich, Jerzy Gorecki
On architectures of circuits implemented in simulated Belousov-Zhabotinsky droplets. 72-77 - Vincenzo Manca
Solving dynamical inverse problems by means of Metabolic P systems. 78-86
Volume 109, Number 2, August 2012
- Keping Li, Ziyou Gao:
Simulating cooperative behavior in human collective search pattern. 87-90 - Iñaki Sainz de Murieta, Alfonso Rodríguez-Patón
DNA biosensors that reason. 91-104 - John A. Fozard
Inhibition of quorum sensing in a computational biofilm simulation. 105-114 - Efstratios Manousakis:
When perceptual time stands still: Long percept-memory in binocular rivalry. 115-125 - Manuela Murariu, Gabi Drochioiu:
Biostructural theory of the living systems. 126-132 - Dino G. Salinas
The most probable number of blocks for the partitions of the set of codons could have determined the number of standard amino acids. 133-136 - Ioannis G. Karafyllidis
Mechanics and resonance of the cyanobacterial circadian oscillator. 137-140 - Antonin Guilloux, Jean-Luc Jestin:
The genetic code and its optimization for kinetic energy conservation in polypeptide chains. 141-144 - Takuya Umehara, Takahiro Kitagawa, Yu Nakazawa, Hinako Yoshino, Ryohei Nemoto, Koji Tamura:
RNA tetraplex as a primordial peptide synthesis scaffold. 145-150 - Luigi Leonardo Palese
The human extended mitochondrial metabolic network: New hubs from lipids. 151-158 - Koichiro Matsuno:
Chemical evolution as a concrete scheme for naturalizing the relative-state of quantum mechanics. 159-168 - Brian K. Clark, K. J. Wabick, J. G. Weidner:
Inversion and crossover recombination contributions to the spacing between two functionally linked genes. 169-178 - Shane L. Hubler, Gheorghe Craciun:
Periodic patterns in distributions of peptide masses. 179-185 - Georg Basler, Sergio Grimbs
Optimizing metabolic pathways by screening for feasible synthetic reactions. 186-191 - Jian Zu
Adaptive evolution of anti-predator ability promotes the diversity of prey species: Critical function analysis. 192-202 - Steady Mushayabasa
Is HIV infection associated with an increased risk for cholera? Insights from a mathematical model. 203-213 - Huan Huang, Shuangxin Yu, Hongde Liu, Xiao Sun:
Nucleosome organization in sequences of alternative events in human genome. 214-219
- Tapan Kumar Kar
Sustainability and optimal control of an exploited prey predator system through provision of alternative food to predator. 220-232 - Andrejs Kostromins, Egils Stalidzans
Paint4Net: COBRA Toolbox extension for visualization of stoichiometric models of metabolism. 233-239
- Hongyan Zhang, Xiyu Liu:
Corrigendum to "A CLIQUE algorithm using DNA computing techniques based on closed-circle DNA sequences*" [Biosystems 105 (2011) 73-82]. 240
Volume 109, Number 3, September 2012
- Abir U. Igamberdiev
Editorial. 241-242
- Michael Levin
Morphogenetic fields in embryogenesis, regeneration, and cancer: Non-local control of complex patterning. 243-261 - Lev V. Beloussov:
Morphogenesis as a macroscopic self-organizing process. 262-279 - Valeria V. Isaeva, Nickolay V. Kasyanov, Eugene V. Presnov:
Topological singularities and symmetry breaking in development. 280-298 - Vladimir G. Cherdantsev, Victoria A. Scobeyeva
Morphogenetic origin of natural variation. 299-313 - Vladimir G. Cherdantsev, Olga V. Grigorieva:
Morphogenesis of active shells. 314-328 - Vitaly V. Gursky, Svetlana Surkova
Mechanisms of developmental robustness. 329-335 - Abir U. Igamberdiev
Biomechanical and coherent phenomena in morphogenetic relaxation processes. 336-345
- Ondrej Kucera
Mechano-electrical vibrations of microtubules - Link to subcellular morphology. 346-355 - Michal Cifra
Electrodynamic eigenmodes in cellular morphology. 356-366 - Alexis Mari Pietak:
Structural evidence for electromagnetic resonance in plant morphogenesis. 367-380 - Jack A. Tuszynski
A mean field Ising model for cortical rotation in amphibian one-cell stage embryos. 381-389 - Kai Lu, Tong Cao
A cell state splitter and differentiation wave working-model for embryonic stem cell development and somatic cell epigenetic reprogramming. 390-396 - Robert Palin, Anja Geitmann
The role of pectin in plant morphogenesis. 397-402 - Wenting Zhu, Celeste M. Nelson:
PI3K signaling in the regulation of branching morphogenesis. 403-411
- Victor D. Varner, Larry A. Taber:
On integrating experimental and theoretical models to determine physical mechanisms of morphogenesis. 412-419 - Yukio-Pegio Gunji, Ryo Ono:
Sociality of an agent during morphogenetic canalization: Asynchronous updating with potential resonance. 420-429 - Andreea Robu, Roxana Aldea, Oana Munteanu, Monica Neagu
Computer simulations of in vitro morphogenesis. 430-443 - Comron Nouri, Jack A. Tuszynski
Simulation of the effects of microtubules in the cortical rotation of amphibian embryos in normal and zero gravity. 444-449 - Eileen J. Cox, Lisa Willis, Katie Bentley
Integrated simulation with experimentation is a powerful tool for understanding diatom valve morphogenesis. 450-459 - Vincent Fleury:
Clarifying tetrapod embryogenesis by a dorso-ventral analysis of the tissue flows during early stages of chicken development. 460-474 - Marc R. Roussel
A biochemically semi-detailed model of auxin-mediated vein formation in plant leaves. 475-487 - Lionel G. Harrison, Richard J. Adams, David M. Holloway
Dynamic regulation of growing domains for elongating and branching morphogenesis in plants. 488-497 - Michal Joachimczak
Evolution of robustness to damage in artificial 3-dimensional development. 498-505
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