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19th ISBRA 2023: Wrocław, Poland
- Xuan Guo
, Serghei Mangul
Bioinformatics Research and Applications - 19th International Symposium, ISBRA 2023, Wrocław, Poland, October 9-12, 2023, Proceedings. Lecture Notes in Computer Science 14248, Springer 2023, ISBN 978-981-99-7073-5 - Sarwan Ali, Pin-Yu Chen, Murray Patterson:
Unveiling the Robustness of Machine Learning Models in Classifying COVID-19 Spike Sequences. 1-15 - Sarwan Ali, Usama Sardar, Imdadullah Khan
Efficient Sequence Embedding for SARS-CoV-2 Variants Classification. 16-30 - Joyanta Basak, Ahmed Soliman, Nachiket Deo, Kenneth Haase, Anup Mathur, Krista Park, Rebecca C. Steorts, Daniel Weinberg, Sartaj Sahni, Sanguthevar Rajasekaran:
On Computing the Jaro Similarity Between Two Strings. 31-44 - Xuehua Bi, Chunyang Jiang, Cheng Yan, Kai Zhao, Linlin Zhang, Jianxin Wang:
Identifying miRNA-Disease Associations Based on Simple Graph Convolution with DropMessage and Jumping Knowledge. 45-57 - Casper Asbjørn Eriksen
Reconciling Inconsistent Molecular Structures from Biochemical Databases. 58-71 - Ahtisham Fazeel Abbasi, Muhammad Nabeel Asim, Johan Trygg, Andreas Dengel, Sheraz Ahmed:
Deep Learning Architectures for the Prediction of YY1-Mediated Chromatin Loops. 72-84 - Yuxia Guan, Ying An, Fengyi Guo, Jianxin Wang:
MPFNet: ECG Arrhythmias Classification Based on Multi-perspective Feature Fusion. 85-96 - Md. Tofazzal Hossain, Md. Selim Reza, Xuelei Li, Yin Peng, Shengzhong Feng, Yanjie Wei:
PCPI: Prediction of circRNA and Protein Interaction Using Machine Learning Method. 97-106 - Xiaodi Hou, Guoming Sang, Zhi Liu, Xiaobo Li, Yijia Zhang:
Radiology Report Generation via Visual Recalibration and Context Gating-Aware. 107-119 - Guy Katriel, Udi Mahanaymi, Christoph Koutschan
Using Generating Functions to Prove Additivity of Gene-Neighborhood Based Phylogenetics - Extended Abstract. 120-135 - Hongyang Lei
TCSA: A Text-Guided Cross-View Medical Semantic Alignment Framework for Adaptive Multi-view Visual Representation Learning. 136-149 - Haijing Luan
Multi-class Cancer Classification of Whole Slide Images Through Transformer and Multiple Instance Learning. 150-164 - Huidong Ma, Cheng Zhong, Hui Sun, Danyang Chen, Haixiang Lin:
ricME: Long-Read Based Mobile Element Variant Detection Using Sequence Realignment and Identity Calculation. 165-177 - Tian-Jing Qiao, Feng Li, Shasha Yuan, Ling-Yun Dai, Juan Wang:
scGASI: A Graph Autoencoder-Based Single-Cell Integration Clustering Method. 178-189 - Qianqian Ren, Yahan Li, Feng Li, Jin-Xing Liu, Junliang Shang:
ABCAE: Artificial Bee Colony Algorithm with Adaptive Exploitation for Epistatic Interaction Detection. 190-201 - Enrico Rossignolo, Matteo Comin
USTAR: Improved Compression of k-mer Sets with Counters Using de Bruijn Graphs. 202-213 - Hossein Saghaian, Pavel Skums, Yurij Ionov, Alex Zelikovsky:
Graph-Based Motif Discovery in Mimotope Profiles of Serum Antibody Repertoire. 214-226 - Usama Sardar, Sarwan Ali, Muhammad Sohaib Ayub, Muhammad Shoaib, Khurram Bashir, Imdadullah Khan, Murray Patterson:
Sequence-Based Nanobody-Antigen Binding Prediction. 227-240 - Gabriel Siqueira
Approximating Rearrangement Distances with Replicas and Flexible Intergenic Regions. 241-254 - Michael Souza
The Ordered Covering Problem in Distance Geometry. 255-266 - Sarah von Löhneysen
Phylogenetic Information as Soft Constraints in RNA Secondary Structure Prediction. 267-279 - Shaokai Wang, Ming Zhu, Bin Ma:
NeoMS: Identification of Novel MHC-I Peptides with Tandem Mass Spectrometry. 280-291 - Huixiu Xu, Xin Tong, Haitao Jiang, Lusheng Wang, Binhai Zhu, Daming Zhu:
On Sorting by Flanked Transpositions. 292-311 - Shuo Xu, Liping Kang, Xingyu Bi, Xiaohui Wu:
Integrative Analysis of Gene Expression and Alternative Polyadenylation from Single-Cell RNA-seq Data. 312-324 - Zhidong Yang
SaID: Simulation-Aware Image Denoising Pre-trained Model for Cryo-EM Micrographs. 325-336 - Sumaira Zaman, Mukul S. Bansal
Reducing the Impact of Domain Rearrangement on Sequence Alignment and Phylogeny Reconstruction. 337-350 - Jingjing Zhang, Md. Tofazzal Hossain, Zhen Ju, Wenhui Xi, Yanjie Wei:
Identification and Functional Annotation of circRNAs in Neuroblastoma Based on Bioinformatics. 351-363 - Yan Zhang, Xin Liu, Panrui Tang, Zuping Zhang:
SGMDD: Subgraph Neural Network-Based Model for Analyzing Functional Connectivity Signatures of Major Depressive Disorder. 364-375 - Sarwan Ali, Prakash Chourasia, Murray Patterson:
PDB2Vec: Using 3D Structural Information for Improved Protein Analysis. 376-386 - Sarwan Ali, Haris Mansoor, Prakash Chourasia, Murray Patterson:
Hist2Vec: Kernel-Based Embeddings for Biological Sequence Classification. 387-397 - Ying An, Anxuan Xiong, Lin Guo:
DCNN: Dual-Level Collaborative Neural Network for Imbalanced Heart Anomaly Detection. 398-408 - Jakob L. Andersen
On the Realisability of Chemical Pathways. 409-419 - Carissa Bleker
A Brief Study of Gene Co-expression Thresholding Algorithms. 420-430 - Mathieu Bolteau
Inferring Boolean Networks from Single-Cell Human Embryo Datasets. 431-441 - Prakash Chourasia, Taslim Murad, Sarwan Ali, Murray Patterson:
Enhancing t-SNE Performance for Biological Sequencing Data Through Kernel Selection. 442-452 - Hafsa Farooq
Genetic Algorithm with Evolutionary Jumps. 453-463 - Yulong Li
HetBiSyn: Predicting Anticancer Synergistic Drug Combinations Featuring Bi-perspective Drug Embedding with Heterogeneous Data. 464-475 - Gatis Melkus
Clique-Based Topological Characterization of Chromatin Interaction Hubs. 476-486 - Bikram Sahoo
Exploring Racial Disparities in Triple-Negative Breast Cancer: Insights from Feature Selection Algorithms. 487-497 - Bikram Sahoo
Deep Learning Reveals Biological Basis of Racial Disparities in Quadruple-Negative Breast Cancer. 498-508 - André Salgado
CSA-MEM: Enhancing Circular DNA Multiple Alignment Through Text Indexing Algorithms. 509-517 - Jordan Sturtz, Richard Annan, Binhai Zhu
A Convolutional Denoising Autoencoder for Protein Scaffold Filling. 518-529 - Zahra Tayebi, Akshay Juyal, Alexander Zelikovsky, Murray Patterson:
Simulating Tumor Evolution from scDNA-Seq as an Accumulation of both SNVs and CNAs. 530-540 - Tai-Ge Wang, Xiang-Zhen Kong, Shengjun Li, Juan Wang:
CHLPCA: Correntropy-Based Hypergraph Regularized Sparse PCA for Single-Cell Type Identification. 541-551
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