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4. ECCB / 6. JBI 2005: Madrid, Spain (Supplement of Bioinformatics)
- ECCB/JBI'05 Proceedings, Fourth European Conference on Computational Biology/Sixth Meeting of the Spanish Bioinformatics Network (Jornadas de BioInformática), Palacio de Congresos, Madrid, Spain, September 28 - October 1, 2005. 2005
- Roderic Guigó, Federico Morán, Alfonso Valencia, Josep F. Abril:
ECCB/JBI 2005. 2 - ECCB/JBI 2005 Organization. 5
- Cigdem Demir, S. Humayun Gultekin, Bülent Yener:
Augmented cell-graphs for automated cancer diagnosis. 12 - David de Juan
, Mario Mellado
A framework for computational and experimental methods: Identifying dimerization residues in CCR chemokine receptors. 18 - Gisele L. Pappa, Anthony J. Baines
Predicting post-synaptic activity in proteins with data mining. 25 - Sònia Casillas
DPDB: a database for the storage, representation and analysis of polymorphism in the Drosophila genus. 30 - Myungeun Lim, Myunggeun Chung, Myungnam Bae, Sunhee Park:
Design of a description language for generating wrapper to collect biological data. 32 - Ulf Leser:
A query language for biological networks. 39 - Andreas Prlic
Adding Some SPICE to DAS. 41 - Roland Arnold
SIMAP - The similarity matrix of proteins. 46 - Oranit Dror, Ruth Nussinov
ARTS: alignment of RNA tertiary structures. 53 - Emidio Capriotti
Predicting protein stability changes from sequences using support vector machines. 58 - Koji Tsuda, Hyunjung Shin, Bernhard Schölkopf:
Fast protein classification with multiple networks. 65 - Joseph D. Szustakowski
Less is more: towards an optimal universal description of protein folds. 71 - Alejandro Giorgetti
Evaluating the usefulness of protein structure models for molecular replacement. 76 - Kristin Missal, Dominic Rose, Peter F. Stadler
Non-coding RNAs in Ciona intestinalis. 78 - Eugene W. Myers:
The fragment assembly string graph. 85 - Henry C. M. Leung, Francis Y. L. Chin:
Finding exact optimal motifs in matrix representation by partitioning. 92 - Sungroh Yoon, Giovanni De Micheli:
Prediction of regulatory modules comprising microRNAs and target genes. 100 - Tho Hoan Pham, José Carlos Clemente, Kenji Satou, Tu Bao Ho:
Computational discovery of transcriptional regulatory rules. 107 - Sach Mukherjee, Stephen J. Roberts, Mark J. van der Laan:
Data-adaptive test statistics for microarray data. 114 - Florian Sohler
Identifying active transcription factors and kinases from expression data using pathway queries. 122 - Elisabeth Georgii, Lothar Richter, Ulrich Rückert, Stefan Kramer:
Analyzing microarray data using quantitative association rules. 129 - C. Vogl, Fátima Sánchez-Cabo, Gernot Stocker, Simon J. Hubbard
A fully Bayesian model to cluster gene-expression profiles. 136 - Walter R. Gilks, Brian D. M. Tom, Alvis Brazma
Fusing microarray experiments with multivariate regression. 143 - Toni Gabaldón
Lineage-specific gene loss following mitochondrial endosymbiosis and its potential for function prediction in eukaryotes. 150 - Itay Mayrose, Nir Friedman
A Gamma mixture model better accounts for among site rate heterogeneity. 158 - Daniel H. Huson, Tobias H. Klöpper:
Computing recombination networks from binary sequences. 165 - Dirk Husmeier
Discriminating between rate heterogeneity and interspecific recombination in DNA sequence alignments with phylogenetic factorial hidden Markov models. 172 - Mathieu Lajoie, Nadia El-Mabrouk:
Recovering haplotype structure through recombination and gene conversion. 179 - Tomàs Marquès-Bonet, Oscar Lao
Association Cluster Detector: a tool for heuristic detection of significance clusters in whole-genome scans. 181 - Yiping Zhan, David Kulp
Model-P: a basecalling method for resequencing microarrays of diploid samples. 189 - E. Simão, Elisabeth Remy, Denis Thieffry
Qualitative modelling of regulated metabolic pathways: application to the tryptophan biosynthesis in E.Coli. 196 - Dmitriy Leyfer, Zhiping Weng:
Genome-wide decoding of hierarchical modular structure of transcriptional regulation by cis-element and expression clustering. 203 - Jean-Marc Schwartz
A quadratic programming approach for decomposing steady-state metabolic flux distributions onto elementary modes. 205 - Naoki Nariai, Yoshinori Tamada
Estimating gene regulatory networks and protein-protein interactions of Saccharomyces cerevisiae from multiple genome-wide data. 212 - Tran Hoai Nam, Chitta Baral, Vinay J. Nagaraj, Lokesh Joshi:
Knowledge-based framework for hypothesis formation in biochemical networks. 219 - Mario Albrecht, Carola Huthmacher, Silvio C. E. Tosatto
Decomposing protein networks into domain-domain interactions. 221 - Csaba Pál, Balázs Papp
Horizontal gene transfer depends on gene content of the host. 223 - José M. Peña, Johan Björkegren
Growing Bayesian network models of gene networks from seed genes. 229 - Olga Vitek, Chris Bailey-Kellogg, Bruce A. Craig, Paul Kuliniewicz, Jan Vitek:
Reconsidering complete search algorithms for protein backbone NMR assignment. 236 - Kengo Sato
RNA secondary structural alignment with conditional random fields. 242 - Sjors H. W. Scheres
Fast maximum-likelihood refinement of electron microscopy images. 244 - Shanfeng Zhu
A probabilistic model for mining implicit 'chemical compound-gene' relations from literature. 251 - Robert Hoffmann, Alfonso Valencia:
Implementing the iHOP concept for navigation of biomedical literature. 258 - Robert Küffner, Katrin Fundel, Ralf Zimmer
Expert knowledge without the expert: integrated analysis of gene expression and literature to derive active functional contexts. 267 - Martin Szugat, Daniel Güttler, Katrin Fundel, Florian Sohler
Web servicing the biological office. 269
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