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9. CMSB 2011: Paris, France
- François Fages:
Computational Methods in Systems Biology, 9th International Conference, CMSB 2011, Paris, France, September 21-23, 2011. Proceedings. ACM 2011, ISBN 978-1-4503-0817-5 - Thomas A. Henzinger, Maria Mateescu:
Propagation models for computing biochemical reaction networks. 1-3 - Pedro Mendes, Natalie J. Stanford
, Kieran Smallbone:
Kinetic modelling of large-scale metabolic networks. 5-6 - Denis Thieffry:
Logical modelling of haematopoietic cell fate reprogramming. 7 - Eugen Czeizler
The phosphorylation of the heat shock factor as a modulator for the heat shock response. 9-23 - Jimmy Omony, Astrid R. Mach-Aigner
Evaluation of design strategies for time course experiments in genetic networks: the XlnR regulon in Aspergillus niger. 25-33
Stochastic models
- Sucheendra K. Palaniappan
A hybrid factored frontier algorithm for dynamic Bayesian network models of biopathways. 35-44 - Alessio Angius, András Horváth
Analysis of stochastic reaction networks with Markov reward models. 45-54 - Jacques Demongeot
The singular power of the environment on stochastic nonlinear threshold Boolean automata networks. 55-64
High performance computing
- Diego Darriba
HPC selection of models of DNA substitution. 65-72 - Martin Falk
Parallelized agent-based simulation on CPU and graphics hardware for spatial and stochastic models in biology. 73-82 - Hiroyuki Kuwahara, Xin Gao
An efficient parallel stochastic simulation method for analysis of nonviral gene delivery systems. 83-93 - Irene Sánchez-Linares, Horacio Emilio Pérez Sánchez
Accelerating multiple target drug screening on GPUs. 95-102
Simulation
- Ezio Bartocci
Toward real-time simulation of cardiac dynamics. 103-112 - Xuefeng Gao, Sabin Tabirca
Computer simulation of Salmonella typhimurium accumulation within tumors. 113-119
Discrete models
- Hannes Klarner, Heike Siebert, Alexander Bockmayr
Parameter inference for asynchronous logical networks using discrete time series. 121-130 - Luca Cardelli
Reversible structures. 131-140
Spatial models
- Mark Burkitt, Dawn C. Walker, Daniela M. Romano
Modelling sperm behaviour in a 3D environment. 141-149 - Abhishek Murthy, Ezio Bartocci
Curvature analysis of cardiac excitation wavefronts. 151-160 - Arne T. Bittig
Adapting rule-based model descriptions for simulating in continuous and hybrid space. 161-170 - Nicolas Oury, Gordon D. Plotkin:
Coloured stochastic multilevel multiset rewriting. 171-181
Multiscale models
- Nicola Paoletti
Osteoporosis: a multiscale modeling viewpoint. 183-193 - Andrea Degasperi
Multi-scale modelling of biological systems in process algebra with multi-way synchronisation. 195-208 - Qian Gao, Fei Liu, David R. Gilbert, Monika Heiner
A multiscale approach to modelling planar cell polarity in Drosophila wing using hierarchically coloured Petri nets. 209-218
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