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14th BIBE 2014: Boca Raton, FL, USA
- 2014 IEEE International Conference on Bioinformatics and Bioengineering, Boca Raton, FL, USA, November 10-12, 2014. IEEE Computer Society 2014, ISBN 978-1-4799-7502-0
Main Conference Papers
Session A: Gene and Network Analysis
- Ray Duenas Jimenez
, David Correa Martins Jr., Carlos Silva Santos:
Gene Networks Inference through One Genetic Algorithm Per Gene. 1-8 - Leandro de A. Lima, Sérgio Nery Simões, Ronaldo Fumio Hashimoto
Network-Based Disease Gene Prioritization by Hitting Time Analysis. 9-14 - Tripti Swarnkar
Multiview Clustering on PPI Network for Gene Selection and Enrichment from Microarray Data. 15-22 - Mina Moradi Kordmahalleh, Mohammad Gorji Sefidmazgi
Delayed and Hidden Variables Interactions in Gene Regulatory Networks. 23-29
Session B: Advanced Learning for Biomedical Data
- Xiaowei Jia, Kang Li, Xiaoyi Li, Aidong Zhang:
A Novel Semi-Supervised Deep Learning Framework for Affective State Recognition on EEG Signals. 30-37 - Mingon Kang, Dong-Chul Kim, Chunyu Liu, Baoju Zhang, Xiaoyong Wu, Jean Gao:
Multi-block and Multi-task Learning for Integrative Genomic Study. 38-45 - Ghafoor Shah, Peter Koch
Analysis of Acoustic Cardiac Signals for Heart Rate Variability and Murmur Detection Using Nonnegative Matrix Factorization-Based Hierarchical Decomposition. 46-53 - Zachary Terner, Timothy Carroll, Donald E. Brown:
Measures of Entropy and Change Point Analysis as Predictors of Post-Surgical Adverse Outcomes. 54-61
Session C: Bio-Imaging and Pattern Recognition
- Michail Tsakalakis, Nikolaos G. Bourbakis:
Ultrasound Image Despeckling/Denoising Based on a Novel Multi-transducer Architecture. 62-68 - Chunmei Shi, Lingling Zhao, Peijun Ma, Xiaohong Su, Junjie Wang, Chiping Zhang:
Multi-object Tracking Based on Particle Probability Hypothesis Density Tracker in Microscopic Video. 69-75 - Zhangwei Jiang, Jing He
A Local Adaptive Segmentation of Vascular Network from Abnormal Retinal Images. 76-82 - Amanda B. Holbert, Holly P. Whitelam, Letha J. Sooter, Jeremy M. Dawson:
Evaluation of Hand Bacteria as a Human Biometric Identifier. 83-89
Session D: Privacy, Security, and Personalized Diagnose
- Suxin Guo, Sheng Zhong, Aidong Zhang:
Privacy Preserving Calculation of Fisher Criterion Score for Informative Gene Selection. 90-96 - Ashis Kumer Biswas
NMF-Based LncRNA-Disease Association Inference and Bi-Clustering. 97-104 - Weidong Qiu, Run Zhu, Jie Guo, Xiaoming Tang, Bozhong Liu, Zheng Huang:
A New Approach to Multimedia Files Carving. 105-110 - K. Moriura, H. Hagiwara:
Physiological and Psychological Changes during Breathing Control Using Illuminance Changes with Different Cycles. 111-114 - Aydin Saribudak, Emir Ganic, Jianmin Zou, Stephen Gundry, M. Ümit Uyar:
Toward Genomic Based Personalized Mathematical Models for Breast Cancer Tumor Growth. 115-119
Session E: Bio-Engineering Systems
- Faisal M. Khan, Michael Barnathan, Michael Montgomery, Stanely Myers, Lucien Cote, Sheree Loftus:
A Wearable Accelerometer System for Unobtrusive Monitoring of Parkinson's Diease Motor Symptoms. 120-125 - Dat Tran, Kiet Duong, Ujjal K. Bhowmik:
A VHDL Based Controller Design for Non-contact Temperature and Breathing Sensors Suitable for Crib. 126-133 - Angelo Zerbetto Neto, Alexandre Mesquita, Marilda Machado Spindola, Marcos Magnani:
Prototype of a Wheelchair Controlled by Cervical Movements. 134-140 - Atena Roshan Fekr, Katarzyna Radecka, Zeljko Zilic:
Design of an e-Health Respiration and Body Posture Monitoring System and Its Application for Rib Cage and Abdomen Synchrony Analysis. 141-148
Session F: Feature Selection and Weighting
- Ahmad Abu Shanab, Taghi M. Khoshgoftaar, Randall Wald:
Evaluation of Wrapper-Based Feature Selection Using Hard, Moderate, and Easy Bioinformatics Data. 149-155 - Randall Wald, Taghi M. Khoshgoftaar, Amri Napolitano:
Using Correlation-Based Feature Selection for a Diverse Collection of Bioinformatics Datasets. 156-162 - Hisham Al-Mubaid
New Feature Weighting Technique for Predicting Protein Subcellular Localization. 163-167 - Larissa Fernandes Leijoto, Thiago Assis De Oliveira Rodrigues, Luis Enrique Zárate, Cristiane Neri Nobre:
A Genetic Algorithm for the Selection of Features Used in the Prediction of Protein Function. 168-174 - Adewale Emmanuel Awodeyi, Stephen R. Alty
On the Filtering of Photoplethysmography Signals. 175-178
Session G: Gene Discovery and Identification
- Lefteris Koumakis
miRNA Based Pathway Analysis Tool in Nephroblastoma as a Proof of Principle for other Cancer Domains. 179-184 - Lianfen Qian, Wei Zhang, Zhongwei Li:
Essential Gene Identification for a Microarray Data of Yersinia Pestis. 185-190 - Koosha Tahmasebipour, Sheridan K. Houghten:
Disease-Gene Association Using a Genetic Algorithm. 191-197 - Sajid A. Marhon
A New, Dynamic-Representation-Based Gene Finding Method with an Analysis of False Positive Peaks. 198-203
Session H: Biomedical Documents and Multi-source Mining
- Ahmed Ibrahim, Anca I. D. Bucur, Andre Dekker
Analysis of the Suitability of Existing Medical Ontologies for Building a Scalable Semantic Interoperability Solution Supporting Multi-site Collaboration in Oncology. 204-211 - Shuchu Han, Hong Qin, Dantong Yu:
An Improved Ratio-Based (IRB) Batch Effects Removal Algorithm for Cancer Data in a Co-Analysis Framework. 212-219 - Long Cheng
Investigating Distributed Approaches to Efficiently Extract Textual Evidences for Biomedical Ontologies. 220-225 - Anand Krishnan, Jon Sligh, Eric Tinsley, Natalie Crohn, Jean Bandos, Heather Bush, Jason Depasquale, Mathew Palakal:
Causal Association Mining from Geriatric Literature. 226-230
Session I: Gene and Protein Networks
- Felipe A. Kuentzer, Alexandre S. Pereira, Alexandre M. Amory
Optimization and Analysis of Seriation Algorithm for Ordering Protein Networks. 231-237 - Dong-Chul Kim, Mingon Kang, Baoju Zhang, Xiaoyong Wu, Chunyu Liu, Jean Gao:
Integration of DNA Methylation, Copy Number Variation, and Gene Expression for Gene Regulatory Network Inference and Application to Psychiatric Disorders. 238-242 - Carlos Fernando Montoya-Cubas
Gene Networks Inference through Linear Grouping of Variables. 243-250 - Prayas Timalsina, Kevin Charles, Ananda Mohan Mondal
STRING PPI Score to Characterize Protein Subnetwork Biomarkers for Human Diseases and Pathways. 251-256
Session J: Bio-Engineering and Decision Support Systems (I)
- Alena Simalatsar
Safe Implementation of Embedded Software for a Portable Device Supporting Drug Administration. 257-264 - Nenad Filipovic
Computer Simulation of Hot Caloric Test Response in the Three Semicircular Canal. 265-269 - Subrata Acharya, Reza Sarraf:
Proactive Real-Time Solution for Asthma Management. 270-276 - Gabriela Henriques, Deborah A. Stacey
An Ontology-Based Framework for Analysis Recommendation. 277-282
Session K: Bio-Signal Processing (I)
- Vahid Taslimitehrani, Guozhu Dong:
A New CPXR Based Logistic Regression Method and Clinical Prognostic Modeling Results Using the Method on Traumatic Brain Injury. 283-290 - Maria Anastasiadou
Detection and Removal of Muscle Artifacts from Scalp EEG Recordings in Patients with Epilepsy. 291-296 - Kostas Michalopoulos
Fusion of EEG Topograhic Features and fMRI Using Canonical Partial Least Squares. 297-303 - David J. Dittman, Taghi M. Khoshgoftaar, Amri Napolitano:
Selecting the Appropriate Data Sampling Approach for Imbalanced and High-Dimensional Bioinformatics Datasets. 304-310 - Adewale Emmanuel Awodeyi, Stephen R. Alty
Median Based Method for Baseline Wander Removal in Photoplethysmogram Signals. 311-314
Session L: Bio-Engineering and Decision Support Systems (II)
- Armin Amindari, Huseyin Cagatay Yalcin:
Numerical Assessment of Turbulent Flow Downstream of Stenosed Aortic Valve with Flexible Leaflets Using Fluid-Solid Interactions Approach. 315-319 - Lin Li:
Diagnosis of Diabetes Using a Weight-Adjusted Voting Approach. 320-324 - Jici Huang, Swapnoneel Roy:
On Sorting under Special Transpositions. 325-328 - Suneetha Uppu, Aneesh Krishna
An Associative Classification Based Approach for Detecting SNP-SNP Interactions in High Dimensional Genome. 329-333
Session M: Bio-Signal Processing (II)
- Anastasios Skiadopoulos
Effect of Blood Rheological Models on Patient Specific Cardiovascular System Simulations. 334-340 - Aniruddha Sinha
Analysis of Cognitive Load - Importance of EEG Channel Selection for Low Resolution Commercial EEG Devices. 341-348 - Tan Sing Yee, Sarinder Kaur Dhillon, Amandeep S. Sidhu
Fuzzy Estimation of Liver Stiffness in Modelling Liver Deformation. 349-354 - Mohammad Goodarzi, Sheridan K. Houghten, Ping Liang:
Effect of Multi-K Contig Merging in de novo DNA Assembly. 355-361
Workshop Papers
Big Data and Data Analytics Workshop
- Randall Wald, Taghi M. Khoshgoftaar, Richard Zuech, Amri Napolitano:
Network Traffic Prediction Models for Near- and Long-Term Predictions. 362-368 - Charles Wheelus, Taghi M. Khoshgoftaar, Richard Zuech, Maryam M. Najafabadi:
A Session Based Approach for Aggregating Network Traffic Data - The SANTA Dataset. 369-378 - Maryam M. Najafabadi, Taghi M. Khoshgoftaar, Clifford Kemp, Naeem Seliya, Richard Zuech:
Machine Learning for Detecting Brute Force Attacks at the Network Level. 379-385 - Bassem Alhalabi, Clyde Carryl:
Universal Physical Access Control System. 386-393
Health Informatics Workshop
- Ravi S. Behara, Ankur Agarwal, Pranitha Pulumati, Ritesh Jain, Vinaya Rao:
Predictive Modeling for Wellness and Chronic Conditions. 394-398 - Ankur Agarwal, Ravi S. Behara, Sirish Mulpura, Vivek Tyagi:
Domain Independent Natural Language Processing - A Case Study for Hospital Readmission with COPD. 399-404 - Vinaya Rao, Ravi S. Behara, Ankur Agarwal:
Predictive Modeling for Organ Transplantation Outcomes. 405-408 - Christopher J. de la Houssaye, Sirish Mulpura, Steven J. Deprima:
MRI Reliability in Correlating Clinical Findings of Trigeminal Neuralgia. 409-412 - David J. Dittman, Taghi M. Khoshgoftaar, Amri Napolitano, Alireza Fazelpour:
Select-Bagging: Effectively Combining Gene Selection and Bagging for Balanced Bioinformatics Data. 413-419 - Taghi M. Khoshgoftaar, Alireza Fazelpour, David J. Dittman, Amri Napolitano:
Effects of the Use of Boosting on Classification Performance of Imbalanced Bioinformatics Datasets. 420-426 - Micheal Hwang, Patricio Rossi, Sirish Mulpura:
Basilar Atelectasis as the True Predictor of Acute Abdomino-Pelvic Pathology - A Two Year Retrospective Study of Patients under the Age of 55 Evaluated with Multi-detector CT-Scan. 427-429 - Bassem Alhalabi, Clyde Carryl, Mirjana Pavlovic:
Activity Analysis and Detection of Repetitive Motion in Autistic Patients. 430-437
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