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BICoB 2009: New Orleans, LA, USA
- Sanguthevar Rajasekaran:
Bioinformatics and Computational Biology, First International Conference, BICoB 2009, New Orleans, LA, USA, April 8-10, 2009. Proceedings. Lecture Notes in Computer Science 5462, Springer 2009, ISBN 978-3-642-00726-2
Invited Talks
- Gowtham Atluri, Rohit Gupta, Gang Fang, Gaurav Pandey, Michael S. Steinbach
, Vipin Kumar:
Association Analysis Techniques for Bioinformatics Problems. 1-13 - Eric Banks, Elena Nabieva
Analyzing and Interrogating Biological Networks (Abstract). 14-15 - Vladimir Filkov:
From Architecture to Function (and Back) in Bio-networks. 16-17 - Jianjiong Gao
A New Machine Learning Approach for Protein Phosphorylation Site Prediction in Plants. 18-29 - Benjamin G. Jackson, Patrick S. Schnable, Srinivas Aluru:
Assembly of Large Genomes from Paired Short Reads. 30-43 - Weiming Li, Bin Ma, Kaizhong Zhang:
Amino Acid Classification and Hash Seeds for Homology Search. 44-51 - Ion I. Mandoiu
Genotype and Haplotype Reconstruction from Low-Coverage Short Sequencing Reads. 52-53 - Satoru Miyano, Rui Yamaguchi, Yoshinori Tamada
Gene Networks Viewed through Two Models. 54-66 - Corban G. Rivera, T. M. Murali:
Identifying Evolutionarily Conserved Protein Interaction Modules Using GraphHopper. 67-78 - Thomas K. F. Wong, Siu-Ming Yiu, Tak Wah Lam, Wing-Kin Sung
The 2-Interval Pattern Matching Problems and Its Application to ncRNA Scanning. 79-89
Refereed Papers
- Sahar Al Seesi
RNA Pseudoknot Folding through Inference and Identification Using TAGRNA. 90-101 - Sébastien Angibaud, Damien Eveillard
Comparing Bacterial Genomes by Searching Their Common Intervals. 102-113 - Mukul S. Bansal
Generalized Binary Tanglegrams: Algorithms and Applications. 114-125 - Felix Bollenbeck, Stephanie Kaspar, Hans-Peter Mock
Three-Dimensional Multimodality Modelling by Integration of High-Resolution Interindividual Atlases and Functional MALDI-IMS Data. 126-138 - Christina Boucher, Daniel G. Brown:
Detecting Motifs in a Large Data Set: Applying Probabilistic Insights to Motif Finding. 139-150 - Doruk Bozdag, Jeffrey D. Parvin, Ümit V. Çatalyürek
A Biclustering Method to Discover Co-regulated Genes Using Diverse Gene Expression Datasets. 151-163 - Cao Wei, Kazuya Sumikoshi, Tohru Terada, Shugo Nakamura, Katsuhiko Kitamoto, Kentaro Shimizu:
Computational Protocol for Screening GPI-anchored Proteins. 164-175 - Joseph E. Davis, Adnan Ozsoy, Sandeep Patel, Michela Taufer
Towards Large-Scale Molecular Dynamics Simulations on Graphics Processors. 176-186 - Didier Dréau
An Agent-Based Model of Solid Tumor Progression. 187-198 - Difeng Dong, Chun-Ying Cui, Benjamin Mow, Limsoon Wong
Deciphering Drug Action and Escape Pathways: An Example on Nasopharyngeal Carcinoma. 199-210 - Shantanu Dutt, Yang Dai, Huan Ren, Joel Fontanarosa:
Selection of Multiple SNPs in Case-Control Association Study Using a Discretized Network Flow Approach. 211-223 - Cesim Erten
Biclustering Expression Data Based on Expanding Localized Substructures. 224-235 - Alvaro J. González, Li Liao:
Constrained Fisher Scores Derived from Interaction Profile Hidden Markov Models Improve Protein to Protein Interaction Prediction. 236-247 - Jianjun Hu, Fan Zhang:
Improving Protein Localization Prediction Using Amino Acid Group Based Physichemical Encoding. 248-258 - Abu H. M. Kamal, Xingquan Zhu
The Impact of Gene Selection on Imbalanced Microarray Expression Data. 259-269 - Matthieu Manceny, Marc Aiguier, Pascale Le Gall
Spatial Information and Boolean Genetic Regulatory Networks. 270-281 - Mylène Maurin, Morgan Magnin, Olivier H. Roux:
Modeling of Genetic Regulatory Network in Stochastic pi-Calculus. 282-294 - Fangyuan Nan, Yaonan Wang, Xiaoping Ma:
fMRI Activation Detection by MultiScale Hidden Markov Model. 295-306 - Carl Nettelblad
cnF2freq: Efficient Determination of Genotype and Haplotype Probabilities in Outbred Populations Using Markov Models. 307-319 - Hatice Gulcin Ozer, Doruk Bozdag, Terry Camerlengo, Jiejun Wu, Yi-Wen Huang, Timothy D. R. Hartley, Jeffrey D. Parvin, Tim Hui-Ming Huang, Ümit V. Çatalyürek
A Comprehensive Analysis Workflow for Genome-Wide Screening Data from ChIP-Sequencing Experiments. 320-330 - Hyun Jung Park
A Fitness Distance Correlation Measure for Evolutionary Trees. 331-342 - Allison Regier, Michael Olson, Scott J. Emrich
Alignment and Analysis of Closely Related Genomes. 343-352 - Eric C. Rouchka, Xiangping Wang, James H. Graham, Nigel G. F. Cooper:
Computational Prediction of Genes Translationally Regulated by Cytoplasmic Polyadenylation Elements. 353-361 - Fahad Saeed, Ashfaq A. Khokhar, Osvaldo Zagordi
Multiple Sequence Alignment System for Pyrosequencing Reads. 362-375 - Xinghua Shi, Rick L. Stevens:
A Bayesian Approach to High-Throughput Biological Model Generation. 376-387 - Michael Slavik, Xingquan Zhu
Parallel Selection of Informative Genes for Classification. 388-399 - Jaroslaw Smieja
Simulation Methods in Uncovering New Regulatory Mechanisms in Signaling Pathways. 400-408 - Stephen Tyree, Rayus Kuplicki, Trevor Sarratt, Scott Fujan, John Hale
GridSPiM: A Framework for Simple Locality and Containment in the Stochastic pi-Calculus. 409-423 - Duygu Ucar
Mutual Information Based Extrinsic Similarity for Microarray Analysis. 424-436 - Hari Krishna Yalamanchili, Nita Parekh
Graph Spectral Approach for Identifying Protein Domains. 437-448
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