Interacts with a suite of web application programming interfaces (API) for taxonomic tasks, such as getting database specific taxonomic identifiers, verifying species names, getting taxonomic hierarchies, fetching downstream and upstream taxonomic names, getting taxonomic synonyms, converting scientific to common names and vice versa, and more. Some of the services supported include 'NCBI E-utilities' (<https://www.ncbi.nlm.nih.gov/books/NBK25501/>), 'Encyclopedia of Life' (<https://eol.org/docs/what-is-eol/data-services>), 'Global Biodiversity Information Facility' (<https://techdocs.gbif.org/en/openapi/>), and many more. Links to the API documentation for other supported services are available in the documentation for their respective functions in this package.
| Version: | 0.10.0 |
| Depends: | R (≥ 3.2.1) |
| Imports: | graphics, methods, stats, utils, crul (≥ 0.7.0), xml2 (≥ 1.2.0), jsonlite, ape, zoo, data.table, tibble (≥ 1.2), rredlist, rotl (≥ 3.0.0), ritis (≥ 0.7.6), worrms (≥ 0.4.0), natserv (≥ 1.0.0), wikitaxa (≥ 0.3.0), R6, crayon, cli, phangorn, lifecycle, curl, stringi |
| Suggests: | testthat, vegan, vcr |
| Published: | 2025-02-07 |
| DOI: | 10.32614/CRAN.package.taxize |
| Author: | Scott Chamberlain [aut], Eduard Szoecs [aut], Zachary Foster [aut, cre], Zebulun Arendsee [aut], Carl Boettiger [ctb], Karthik Ram [ctb], Ignasi Bartomeus [ctb], John Baumgartner [ctb], James O'Donnell [ctb], Jari Oksanen [ctb], Bastian Greshake Tzovaras [ctb], Philippe Marchand [ctb], Vinh Tran [ctb], Maëlle Salmon [ctb], Gaopeng Li [ctb], Matthias Grenié [ctb], rOpenSci [fnd] |
| Maintainer: | Zachary Foster <zacharyfoster1989 at gmail.com> |
| BugReports: | https://github.com/ropensci/taxize/issues |
| License: | MIT + file LICENSE |
| URL: | https://docs.ropensci.org/taxize/ (website), https://github.com/ropensci/taxize (devel), https://taxize.dev (user manual) |
| NeedsCompilation: | no |
| Language: | en-US |
| Citation: | taxize citation info |
| Materials: | README NEWS |
| In views: | Phylogenetics |
| CRAN checks: | taxize results |
| Reference manual: | taxize.pdf |
| Package source: | taxize_0.10.0.tar.gz |
| Windows binaries: | r-devel: taxize_0.10.0.zip, r-release: taxize_0.10.0.zip, r-oldrel: taxize_0.10.0.zip |
| macOS binaries: | r-release (arm64): taxize_0.10.0.tgz, r-oldrel (arm64): not available, r-release (x86_64): taxize_0.10.0.tgz, r-oldrel (x86_64): not available |
| Old sources: | taxize archive |
| Reverse imports: | MetaScope |
| Reverse suggests: | camtrapR, ecocomDP, gtools, LocaTT, MonoPhy, spocc |
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