tidysq: Tidy Processing and Analysis of Biological Sequences

A tidy approach to analysis of biological sequences. All processing and data-storage functions are heavily optimized to allow the fastest and most efficient data storage.

Version:	1.2.2
Depends:	R (≥ 3.0.0)
Imports:	checkmate (≥ 1.9.0), cli (≥ 2.0.0), crayon (≥ 1.3.4), dplyr (≥ 1.0.2), pillar (≥ 1.4.2), Rcpp (≥ 1.0.1), tibble (≥ 2.1.3), vctrs (≥ 0.3.0)
LinkingTo:	Rcpp, testthat
Suggests:	ape (≥ 5.3), bioseq (≥ 0.1.2), Biostrings (≥ 2.52.0), covr, knitr, lifecycle, purrr, seqinr (≥ 3.4-5), spelling, rmarkdown, testthat (≥ 3.0.0), withr (≥ 2.2.0), rlang, mockr
Published:	2024-10-24
DOI:	10.32614/CRAN.package.tidysq
Author:	Dominik Rafacz [cre, aut], Michal Burdukiewicz [aut], Laura Bakala [aut], Leon Eyrich Jessen [ctb], Stefan Roediger [ctb], Jadwiga Slowik [ctb], Weronika Puchala [ctb], Katarzyna Sidorczuk [ctb], Filip Pietluch [ctb], Jaroslaw Chilimoniuk [ctb]
Maintainer:	Dominik Rafacz <dominikrafacz at gmail.com>
BugReports:	https://github.com/BioGenies/tidysq/issues
License:	GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
URL:	https://github.com/BioGenies/tidysq
NeedsCompilation:	yes
SystemRequirements:	GNU make, C++17
Language:	en-US
Materials:	README NEWS
CRAN checks:	tidysq results [issues need fixing before 2025-01-10]

Documentation:

Reference manual:	tidysq.pdf
Vignettes:	Advanced alphabet techniques (source, R code) Quick Start (source, R code)

Downloads:

Package source:	tidysq_1.2.2.tar.gz
Windows binaries:	r-devel: tidysq_1.2.2.zip, r-release: tidysq_1.2.2.zip, r-oldrel: tidysq_1.2.2.zip
macOS binaries:	r-release (arm64): tidysq_1.2.2.tgz, r-oldrel (arm64): tidysq_1.2.2.tgz, r-release (x86_64): tidysq_1.2.2.tgz, r-oldrel (x86_64): tidysq_1.2.2.tgz
Old sources:	tidysq archive

Linking:

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