speedytax: Rapidly Import Classifier Results into 'phyloseq'
Import classification results from the 'RDP Classifier' (Ribosomal Database Project),' 'USEARCH sintax,' 'vsearch sintax' and the 'QIIME2' (Quantitative Insights into Microbial Ecology) classifiers into 'phyloseq' tax_table objects.
| Version: | 1.0.4 |
| Imports: | dplyr, phyloseq, Rcpp, stringr, tibble, tidyr |
| LinkingTo: | Rcpp |
| Published: | 2024-05-14 |
| DOI: | 10.32614/CRAN.package.speedytax |
| Author: | John Quensen |
| Maintainer: | John Quensen <quensenj at msu.edu> |
| License: | MIT + file LICENSE |
| NeedsCompilation: | yes |
| Materials: | README NEWS |
| CRAN checks: | speedytax results |
Documentation:
| Reference manual: | speedytax.pdf |
Downloads:
| Package source: | speedytax_1.0.4.tar.gz |
| Windows binaries: | r-devel: speedytax_1.0.4.zip, r-release: speedytax_1.0.4.zip, r-oldrel: speedytax_1.0.4.zip |
| macOS binaries: | r-release (arm64): speedytax_1.0.4.tgz, r-oldrel (arm64): speedytax_1.0.4.tgz, r-release (x86_64): speedytax_1.0.4.tgz, r-oldrel (x86_64): speedytax_1.0.4.tgz |
| Old sources: | speedytax archive |
Linking:
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