bayesnec: A Bayesian No-Effect- Concentration (NEC) Algorithm
Implementation of No-Effect-Concentration estimation that uses 'brms' (see Burkner (2017)<doi:10.18637/jss.v080.i01>; Burkner (2018)<doi:10.32614/RJ-2018-017>; Carpenter 'et al.' (2017)<doi:10.18637/jss.v076.i01> to fit concentration(dose)-response data using Bayesian methods for the purpose of estimating 'ECx' values, but more particularly 'NEC' (see Fox (2010)<doi:10.1016/j.ecoenv.2009.09.012>), 'NSEC' (see Fisher and Fox (2023)<doi:10.1002/etc.5610>), and 'N(S)EC (see Fisher et al. 2023<doi:10.1002/ieam.4809>). A full description of this package can be found in Fisher 'et al.' (2024)<doi:10.18637/jss.v110.i05>. This package expands and supersedes an original version implemented in 'R2jags' (see Su and Yajima (2020)<https://CRAN.R-project.org/package=R2jags>; Fisher et al. (2020)<doi:10.5281/ZENODO.3966864>).
| Version: | 2.1.3.0 |
| Depends: | R (≥ 4.1), brms, ggplot2 |
| Imports: | formula.tools, loo, dplyr, tidyr, purrr, tibble, tidyselect, evaluate, rlang, chk (≥ 0.7.0) |
| Suggests: | rstan, knitr, rmarkdown, testthat (≥ 3.0.0) |
| Published: | 2024-08-19 |
| DOI: | 10.32614/CRAN.package.bayesnec |
| Author: | Rebecca Fisher |
| Maintainer: | Rebecca Fisher <r.fisher at aims.gov.au> |
| BugReports: | https://github.com/open-aims/bayesnec/issues |
| License: | GPL-2 |
| URL: | https://open-aims.github.io/bayesnec/ |
| NeedsCompilation: | no |
| Citation: | bayesnec citation info |
| Materials: | README NEWS |
| In views: | Pharmacokinetics |
| CRAN checks: | bayesnec results |
Documentation:
| Reference manual: | bayesnec.pdf |
| Vignettes: |
Single model usage (source) Multi model usage (source) Model details (source) Priors (source) Comparing posterior predictions (source) Running 'bayesnec' (source) |
Downloads:
| Package source: | bayesnec_2.1.3.0.tar.gz |
| Windows binaries: | r-devel: bayesnec_2.1.3.0.zip, r-release: bayesnec_2.1.3.0.zip, r-oldrel: bayesnec_2.1.3.0.zip |
| macOS binaries: | r-release (arm64): bayesnec_2.1.3.0.tgz, r-oldrel (arm64): bayesnec_2.1.3.0.tgz, r-release (x86_64): bayesnec_2.1.3.0.tgz, r-oldrel (x86_64): bayesnec_2.1.3.0.tgz |
| Old sources: | bayesnec archive |
Linking:
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