qtl2pleio: Testing Pleiotropy in Multiparental Populations
We implement an adaptation of Jiang & Zeng's (1995) <https://www.genetics.org/content/140/3/1111> likelihood ratio test for testing the null hypothesis of pleiotropy against the alternative hypothesis, two separate quantitative trait loci. The test differs from that in Jiang & Zeng (1995) <https://www.genetics.org/content/140/3/1111> and that in Tian et al. (2016) <doi:10.1534/genetics.115.183624> in that our test accommodates multiparental populations.
| Version: | 1.4.3 |
| Depends: | R (≥ 3.2) |
| Imports: | dplyr, gemma2, ggplot2, magrittr, MASS, Rcpp, rlang, tibble, parallel |
| LinkingTo: | Rcpp, RcppEigen |
| Suggests: | covr, mvtnorm, knitr, rmarkdown, testthat, broman, devtools, qtl2, parallelly |
| Published: | 2020-12-02 |
| DOI: | 10.32614/CRAN.package.qtl2pleio |
| Author: | Frederick J Boehm |
| Maintainer: | Frederick J Boehm <frederick.boehm at gmail.com> |
| BugReports: | https://github.com/fboehm/qtl2pleio/issues |
| License: | MIT + file LICENSE |
| URL: | https://github.com/fboehm/qtl2pleio |
| NeedsCompilation: | yes |
| Language: | en-US |
| Citation: | qtl2pleio citation info |
| Materials: | README NEWS |
| CRAN checks: | qtl2pleio results |
Documentation:
| Reference manual: | qtl2pleio.pdf |
| Vignettes: |
Using HTCondor for bootstrap analysis |
Downloads:
| Package source: | qtl2pleio_1.4.3.tar.gz |
| Windows binaries: | r-devel: qtl2pleio_1.4.3.zip, r-release: qtl2pleio_1.4.3.zip, r-oldrel: qtl2pleio_1.4.3.zip |
| macOS binaries: | r-release (arm64): qtl2pleio_1.4.3.tgz, r-oldrel (arm64): qtl2pleio_1.4.3.tgz, r-release (x86_64): qtl2pleio_1.4.3.tgz, r-oldrel (x86_64): qtl2pleio_1.4.3.tgz |
| Old sources: | qtl2pleio archive |
Linking:
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