Use a 'glmmkin' class object (GMMAT package) from the null model to perform generalized linear mixed model-based single-variant and variant set main effect tests, gene-environment interaction tests, and joint tests for association, as proposed in Wang et al. (2020) <doi:10.1002/gepi.22351>.
| Version: | 1.4.2 |
| Depends: | R (≥ 3.2.0) |
| Imports: | Rcpp, Matrix, parallel, MASS, foreach, GMMAT, CompQuadForm, data.table |
| LinkingTo: | Rcpp, RcppArmadillo |
| Suggests: | doMC, SeqArray, SeqVarTools, testthat |
| Published: | 2024-07-26 |
| DOI: | 10.32614/CRAN.package.MAGEE |
| Author: | Xinyu Wang [aut], Han Chen [aut, cre], Duy Pham [aut], Kenneth Westerman [ctb], Cong Pan [aut], Eric Biggers [ctb, cph] (Author and copyright holder of included libdeflate library), Tino Reichardt [ctb, cph] (Author and copyright holder of threading code used in the included Zstandard (zstd) library), Meta Platforms, Inc. and affiliates [cph] (Copyright holder of included Zstandard (zstd) library) |
| Maintainer: | Han Chen <han.chen.2 at uth.tmc.edu> |
| License: | GPL (≥ 3) |
| Copyright: | See COPYRIGHTS for details. MAGEE copyright details |
| NeedsCompilation: | yes |
| CRAN checks: | MAGEE results |
| Reference manual: | MAGEE.pdf |
| Vignettes: |
MAGEE |
| Package source: | MAGEE_1.4.2.tar.gz |
| Windows binaries: | r-devel: MAGEE_1.4.2.zip, r-release: MAGEE_1.4.2.zip, r-oldrel: MAGEE_1.4.2.zip |
| macOS binaries: | r-release (arm64): MAGEE_1.4.2.tgz, r-oldrel (arm64): MAGEE_1.4.2.tgz, r-release (x86_64): MAGEE_1.4.2.tgz, r-oldrel (x86_64): MAGEE_1.4.2.tgz |
| Old sources: | MAGEE archive |
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