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Primary Angle Closure and Sequence Variants within MicroRNA Binding Sites of Genes Involved in Eye Development

PLoS One. 2016 Nov 8;11(11):e0166055. doi: 10.1371/journal.pone.0166055. eCollection 2016.

Abstract

Purpose: The formation of primary angle closure (PAC) and primary angle closure glaucoma (PACG) is regulated by a tissue remodeling pathway that plays a critical role in eye development. MicroRNAs (miRNAs) are powerful gene expression regulators and may exert their effects on tissue remodeling genes. This study investigated the associations between gene variants (single-nucleotide polymorphism, SNP) in miRNA binding sites in the 3'-UTR region of genes involved in eye development and PAC.

Methods: The sample consisted of 232 PAC subjects and 306 controls obtained from a population-based cohort in the Funing District of Jiangsu, China. The markers include 9 SNPs in the COL11A1, PCMTD1, ZNRF3, MTHFR, and ALPPL2 genes respectively. SNP genotyping was performed with a TaqMan-MGB probe using an RT-PCR system.

Results: Of the 9 SNPs studied, the frequency of the minor A allele of COL11A1 rs1031820 was higher in the PAC group than in the control group in allele analysis (p = 0.047). The genotype analysis indicated that MTHFR rs1537514 is marginally associated with PAC (p = 0.014). The CC genotype of rs1537514 was present solely in the PAC group. However, the differences lost significance after Bonferroni correction.

Conclusion: Our study reveals a possible association of COL11A1 and MTHFR with PAC in the Han Chinese population. These results will contribute to an improved understanding of the genetic basis of PACG.

MeSH terms

  • 3' Untranslated Regions / genetics
  • 3' Untranslated Regions / physiology
  • Aged
  • Case-Control Studies
  • Eye / growth & development*
  • Female
  • Gene Frequency
  • Genes, Developmental / genetics*
  • Genes, Developmental / physiology
  • Genotyping Techniques
  • Glaucoma, Angle-Closure / genetics*
  • Humans
  • Male
  • MicroRNAs / genetics*
  • MicroRNAs / physiology
  • Middle Aged
  • Polymorphism, Single Nucleotide / genetics*
  • Polymorphism, Single Nucleotide / physiology

Substances

  • 3' Untranslated Regions
  • MicroRNAs

Grants and funding

The author(s) received no specific funding for this work.