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SMARCB1 SWI/SNF related BAF chromatin remodeling complex subunit B1 [ Vulpes lagopus (Arctic fox) ]

Gene ID: 121475282, updated on 20-Sep-2024

Summary

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Gene symbol
SMARCB1
Gene description
SWI/SNF related BAF chromatin remodeling complex subunit B1
Gene type
protein coding
RefSeq status
MODEL
Organism
Vulpes lagopus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Vulpes
Orthologs
human mouse all
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Genomic context

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See SMARCB1 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
9
Annotation release Status Assembly Chr Location
100 current ASM1834538v1 (GCF_018345385.1) 14 NC_054837.1 (10191913..10228608)

Chromosome 14 - NC_054837.1Genomic Context describing neighboring genes Neighboring gene coiled-coil-helix-coiled-coil-helix domain containing 10 Neighboring gene matrix metallopeptidase 11 Neighboring gene cytochrome b5 type B-like Neighboring gene derlin 3 Neighboring gene synaptic defective enhancer 1-like Neighboring gene solute carrier family 2 member 11

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_054837.1 Chromosome 14 Reference ASM1834538v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transcription coregulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nuclear chromosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Names
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vulpes lagopus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1834538v1 Primary Assembly

Genomic

  1. NC_054837.1 Reference ASM1834538v1 Primary Assembly

    Range
    10191913..10228608
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041728451.1 → XP_041584385.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 isoform X1

    Conserved Domains (2) summary
    pfam04855
    Location:181 → 363
    SNF5; SNF5 / SMARCB1 / INI1
    cd21086
    Location:9 → 107
    WH_NTD_SMARCB1; N-terminal winged helix DNA-binding domain found in SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 (SMARCB1) and similar proteins

  2. XM_041728452.1 → XP_041584386.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 isoform X2

    Conserved Domains (2) summary
    pfam04855
    Location:172 → 354
    SNF5; SNF5 / SMARCB1 / INI1
    cd21086
    Location:9 → 98
    WH_NTD_SMARCB1; N-terminal winged helix DNA-binding domain found in SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 (SMARCB1) and similar proteins
Nucleotide Protein Strain
Heading Accession and Version

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