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18 pages, 12901 KiB  
Article
Evaluating Bicycle Path Roughness: A Comparative Study Using Smartphone and Smart Bicycle Light Sensors
by Tufail Ahmed, Ali Pirdavani, Geert Wets and Davy Janssens
Sensors 2024, 24(22), 7210; https://doi.org/10.3390/s24227210 - 11 Nov 2024
Viewed by 394
Abstract
The quality of bicycle path surfaces significantly influences the comfort of cyclists. This study evaluates the effectiveness of smartphone sensor data and smart bicycle lights data in assessing the roughness of bicycle paths. The research was conducted in Hasselt, Belgium, where various bicycle [...] Read more.
The quality of bicycle path surfaces significantly influences the comfort of cyclists. This study evaluates the effectiveness of smartphone sensor data and smart bicycle lights data in assessing the roughness of bicycle paths. The research was conducted in Hasselt, Belgium, where various bicycle path pavement types, such as asphalt, cobblestone, concrete, and paving tiles, were analyzed across selected streets. A smartphone application (Physics Toolbox Sensor Suite) and SEE.SENSE smart bicycle lights were used to collect GPS and vertical acceleration data on the bicycle paths. The Dynamic Comfort Index (DCI) and Root Mean Square (RMS) values from the data collected through the Physics Toolbox Sensor Suite were calculated to quantify the vibrational comfort experienced by cyclists. In addition, the data collected from the SEE.SENSE smart bicycle light, DCI, and RMS computed results were categorized for a statistical comparison. The findings of the statistical tests revealed no significant difference in the comfort assessment among DCI, RMS, and SEE.SENSE. The study highlights the potential of integrating smartphone sensors and smart bicycle lights for efficient, large-scale assessments of bicycle infrastructure, contributing to more informed urban planning and improved cycling conditions. It also provides a low-cost solution for the city authorities to continuously assess and monitor the quality of their cycling paths. Full article
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Figure 1
<p>Unprocessed data from the Physics Toolbox Sensor Suite application.</p>
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<p>Vibration data from the SEE.SENSE smart bicycle lights.</p>
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<p>Acceleration on bicycle streets with different surface pavements (asphalt-paved and cobblestone-paved).</p>
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<p>Acceleration on asphalt-paved bicycle streets.</p>
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<p>Acceleration on cobblestone-paved bicycle streets.</p>
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<p>DCI of study area bicycle streets.</p>
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<p>RMS of study area bicycle streets.</p>
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<p>SEE.SENSE vibration values of study area bicycle streets.</p>
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<p>RMS, DCI, and SEE.SENSE of study area bicycle streets.</p>
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12 pages, 270 KiB  
Article
Knowledge, Attitude, and Practice of Healthcare Providers Towards Preventive Chemotherapy Neglected Tropical Diseases in the Forécariah Health District, Guinea, 2022
by Fatoumata Diaraye Diallo, Tamba Mina Millimouno, Hawa Manet, Armand Saloum Kamano, Emmanuel Camara, Bienvenu Salim Camara and Alexandre Delamou
Trop. Med. Infect. Dis. 2024, 9(11), 273; https://doi.org/10.3390/tropicalmed9110273 - 11 Nov 2024
Viewed by 418
Abstract
Background: Neglected tropical diseases (NTDs) are a diverse group of twenty diseases that occur in tropical and subtropical regions that particularly affect vulnerable and often marginalised populations. Five of these are classified as “preventive chemotherapy” (PC) diseases such as trachoma, onchocerciasis, geo-helminthiasis, lymphatic [...] Read more.
Background: Neglected tropical diseases (NTDs) are a diverse group of twenty diseases that occur in tropical and subtropical regions that particularly affect vulnerable and often marginalised populations. Five of these are classified as “preventive chemotherapy” (PC) diseases such as trachoma, onchocerciasis, geo-helminthiasis, lymphatic filariasis, and schistosomiasis. This study aimed to describe the knowledge, attitudes, and practices of healthcare providers in the Forecariah health district with respect to PC-NTDs in Guinea in 2022. Methods: A descriptive cross-sectional study was conducted from 7 to 22 November 2022 among healthcare providers in the health district of Forécariah in Guinea. Data on participants’ socio-demographic characteristics and knowledge of and attitudes and practices regarding PC-NTDs were collected using an electronic (KoboToolbox) semi-structured questionnaire and analysed using descriptive statistics. Results: Among the 86 healthcare providers who participated in this study, nurses (44.2%) and young adults aged between 25 and 49 years (81.4%) were mostly represented. The majority of respondents declared having already heard about onchocerciasis (70.7%) and lymphatic filariasis (60.0%) but only the minority declared having already heard about geo-helminthiasis (30.7%), schistosomiasis (21.3%), and trachoma (9.3%). Only a few respondents knew how to prevent PC-NTDs (onchocerciasis 26.7%, lymphatic filariasis 26.7%, geo-helminthiasis 29.3%, and schistosomiasis 17.3%). Many healthcare providers reported they would refer cases of onchocerciasis (50.6%), lymphatic filariasis (58.7%), and schistosomiasis (46.7%) to a management centre. Conclusions: This study highlights the varying levels of knowledge, attitudes, and practices among healthcare providers in dealing with PC-NTDs, suggesting areas for improvement in training and resource allocation. Full article
(This article belongs to the Special Issue Insights on Neglected Tropical Diseases in West Africa)
26 pages, 25964 KiB  
Article
Elliptic Quaternion Matrices: A MATLAB Toolbox and Applications for Image Processing
by Hidayet Hüda Kösal, Emre Kişi, Mahmut Akyiğit and Beyza Çelik
Axioms 2024, 13(11), 771; https://doi.org/10.3390/axioms13110771 - 6 Nov 2024
Viewed by 416
Abstract
In this study, we developed a MATLAB 2024a toolbox that performs advanced algebraic calculations in the algebra of elliptic numbers and elliptic quaternions. Additionally, we introduce color image processing methods, such as principal component analysis, image compression, image restoration, and watermarking, based on [...] Read more.
In this study, we developed a MATLAB 2024a toolbox that performs advanced algebraic calculations in the algebra of elliptic numbers and elliptic quaternions. Additionally, we introduce color image processing methods, such as principal component analysis, image compression, image restoration, and watermarking, based on singular-value decomposition theory for elliptic quaternion matrices; we added these to the newly developed toolbox. The experimental results demonstrate that elliptic quaternionic methods yield better image analysis and processing performance compared to other hypercomplex number-based methods. Full article
(This article belongs to the Special Issue Advances in Classical and Applied Mathematics)
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Figure 1
<p>The set of elliptic quaternions and the number sets it contains.</p>
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<p>Minimum errors of least squares solution of the matrix equation <math display="inline"><semantics> <mrow> <msub> <mi>Q</mi> <mrow> <mo>(</mo> <mi>E</mi> <mo>)</mo> </mrow> </msub> <msub> <mi>X</mi> <mrow> <mo>(</mo> <mi>E</mi> <mo>)</mo> </mrow> </msub> <mo>=</mo> <msub> <mi>P</mi> <mrow> <mo>(</mo> <mi>E</mi> <mo>)</mo> </mrow> </msub> </mrow> </semantics></math> according to <span class="html-italic">p</span>-values.</p>
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<p>Elliptic quaternion matrix representation of the color image airplane.png.</p>
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<p>All experimental test images: (<b>a</b>) airplane.png (<math display="inline"><semantics> <mrow> <mn>512</mn> <mo> </mo> <mo>×</mo> <mo> </mo> <mn>512</mn> </mrow> </semantics></math>), (<b>b</b>) baboon.png (<math display="inline"><semantics> <mrow> <mn>512</mn> <mo> </mo> <mo>×</mo> <mo> </mo> <mn>512</mn> </mrow> </semantics></math>), (<b>c</b>) baby.png (<math display="inline"><semantics> <mrow> <mn>512</mn> <mo> </mo> <mo>×</mo> <mo> </mo> <mn>512</mn> </mrow> </semantics></math>), (<b>d</b>) Barbara.png (<math display="inline"><semantics> <mrow> <mn>576</mn> <mo> </mo> <mo>×</mo> <mo> </mo> <mn>720</mn> </mrow> </semantics></math>), (<b>e</b>) monarch.png (<math display="inline"><semantics> <mrow> <mn>512</mn> <mo> </mo> <mo>×</mo> <mo> </mo> <mn>768</mn> </mrow> </semantics></math>), and (<b>f</b>) peppers.png (<math display="inline"><semantics> <mrow> <mn>512</mn> <mo> </mo> <mo>×</mo> <mo> </mo> <mn>512</mn> </mrow> </semantics></math>).</p>
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<p>The first eigenimage of the test image baby.png.</p>
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<p>Third, tenth, and twenty-fifth eigenimages of the test image baby.png. (<b>a</b>) <math display="inline"><semantics> <mrow> <msub> <mi>u</mi> <mrow> <mn>3</mn> <mfenced open="(" close=")"> <mi>E</mi> </mfenced> </mrow> </msub> <mo>⊗</mo> <msubsup> <mi>v</mi> <mrow> <mn>3</mn> <mfenced open="(" close=")"> <mi>E</mi> </mfenced> </mrow> <mo>*</mo> </msubsup> </mrow> </semantics></math>. (<b>b</b>) <math display="inline"><semantics> <mrow> <msub> <mi>u</mi> <mrow> <mn>10</mn> <mfenced open="(" close=")"> <mi>E</mi> </mfenced> </mrow> </msub> <mo>⊗</mo> <msubsup> <mi>v</mi> <mrow> <mn>10</mn> <mfenced open="(" close=")"> <mi>E</mi> </mfenced> </mrow> <mo>*</mo> </msubsup> </mrow> </semantics></math>. (<b>c</b>) <math display="inline"><semantics> <mrow> <msub> <mi>u</mi> <mrow> <mn>25</mn> <mfenced open="(" close=")"> <mi>E</mi> </mfenced> </mrow> </msub> <mo>⊗</mo> <msubsup> <mi>v</mi> <mrow> <mn>25</mn> <mfenced open="(" close=")"> <mi>E</mi> </mfenced> </mrow> <mo>*</mo> </msubsup> </mrow> </semantics></math>.</p>
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<p>Graphs of singular values of the test images airplane.png.</p>
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<p>Graphs of singular values of test images: (<b>a</b>) baboon.png, (<b>b</b>) baby.png, (<b>c</b>) Barbara.png, (<b>d</b>) monarch.png, and (<b>e</b>) pepper.png.</p>
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<p>Flowchart of image compression using ESVD.</p>
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<p>PSNR and MSE results of the reconstruction of the test image airplane.png for <math display="inline"><semantics> <mrow> <mi>p</mi> <mo> </mo> <mo>=</mo> <mo> </mo> <mo>−</mo> <mn>0.5</mn> </mrow> </semantics></math> and <math display="inline"><semantics> <mrow> <mi>K</mi> <mo> </mo> <mo>=</mo> <mo> </mo> <mn>50</mn> </mrow> </semantics></math>: PSNR = 30.4527; MSE = 9.0100 × <math display="inline"><semantics> <msup> <mn>10</mn> <mrow> <mo>−</mo> <mn>4</mn> </mrow> </msup> </semantics></math>.</p>
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<p>Optimal <span class="html-italic">p</span>-values for PSNR and MSE for the test image aiplane.png.</p>
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<p>Run time comparison of the methods: Separable, QSVD, RBSVD, and ESVD (proposed method) on the test image airplane.png.</p>
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<p>Optimal <span class="html-italic">p</span>-values for the PSNR and MSE values of the test images: (<b>a</b>) baboon.png, (<b>b</b>) baby.png, (<b>c</b>) Barbara.png, (<b>d</b>) monarch.png, and (<b>e</b>) pepper.png.</p>
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<p>Degraded Images: (<b>a</b>) airplane.png, (<b>b</b>) baboon.png, (<b>c</b>) baby.png, (<b>d</b>) Barbara.png, (<b>e</b>) monarch.png, and (<b>f</b>) peppers.png.</p>
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<p>Restored images: (<b>a</b>) airplane.png, (<b>b</b>) baboon.png, (<b>c</b>) baby.png, (<b>d</b>) Barbara.png, (<b>e</b>) monarch.png, and (<b>f</b>) peppers.png.</p>
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<p>The flowchart of watermark embedding.</p>
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<p>The flowchart of watermark extracting.</p>
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<p>(<b>a</b>) Host image; (<b>b</b>) watermark image; (<b>c</b>) watermarked image.</p>
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<p>Change in the MSE (<b>a</b>) and PSNR (<b>b</b>) values between the host image and a watermarked image according to <span class="html-italic">p</span>-values.</p>
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<p>The extracted watermarks from the test image airplane.png: (<b>a</b>) Noise, (<b>b</b>) Cropping, (<b>c</b>) Noise + Cropping, (<b>d</b>) Sharpening, (<b>e</b>) Noise + Sharpening, and (<b>f</b>) Noise + Cropping + Sharpening.</p>
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16 pages, 4929 KiB  
Article
A Comparative Crash-Test of Manual and Semi-Automated Methods for Detecting Complex Submarine Morphologies
by Vasiliki Lioupa, Panagiotis Karsiotis, Riccardo Arosio, Thomas Hasiotis and Andrew J. Wheeler
Remote Sens. 2024, 16(21), 4093; https://doi.org/10.3390/rs16214093 - 2 Nov 2024
Viewed by 524
Abstract
Multibeam echosounders provide ideal data for the semi-automated seabed feature extraction and accurate morphometric measurements. In this study, bathymetric and raw backscatter data were initially used to manually delimit the reef morphologies found in an insular semi-enclosed gulf in the northern Aegean Sea [...] Read more.
Multibeam echosounders provide ideal data for the semi-automated seabed feature extraction and accurate morphometric measurements. In this study, bathymetric and raw backscatter data were initially used to manually delimit the reef morphologies found in an insular semi-enclosed gulf in the northern Aegean Sea (Gera Gulf, Lesvos Island, Greece). The complexity of this environment makes it an ideal area to “crash test” (test to the limit) and compare the results of the delineation methods. A large number of (more than 7000) small but prominent reefs were detected, which made manual mapping extremely time-consuming. Three semi-automated tools were also employed to map the reefs: the Benthic Terrain Modeler (BTM), Confined Morphologies Mapping (CoMMa), and eCognition Multiresolution Segmentation. BTM did not function properly with irregular reef footprints, but by modifying both the bathymetry and slope, the outcome was improved, producing accurate results that appeared to exceed the accuracy of manual mapping. CoMMa, a new GIS morphometric toolbox, was a “one-stop shop” that, besides generating satisfactory reef delineation results (i.e., detecting the same total reef area as the manual method), was also used to extract the morphometric characteristics of the polygons resulting from all the methods. Lastly, the Multiresolution Segmentation also gave satisfactory results with the highest precision. To compare the final maps with the distribution of the reefs, mapcurves were created to estimate the goodness-of-fit (GOF) with the Precision, Recall, and F1 Scores producing values higher than 0.78, suggesting a good detection accuracy for the semi-automated methods. The analysis reveals that the semi-automated methods provided more efficient results in comparison with the time-consuming manual mapping. Overall, for this case study, the modification of the bathymetry and slope enabled the results’ accuracy to be further enhanced. This study asserts that the use of semi-automated mapping is an effective method for delineating the geomorphometry of intricate relief and serves as a powerful tool for habitat mapping and decision-making. Full article
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Figure 1
<p>The location of the study areas (Gera Gulf) in Greece and Lesvos Island (red circle).</p>
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<p>Sketch of overlapping maps (reefs) representing the values of GOF (A: reef area of the reference map, B: reef area of the second map, and C: overlapping area between reef A and B).</p>
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<p>Sketch showing polygons with (<b>a</b>) unique, (<b>b</b>) maximum, and (<b>c</b>) low GOF values (red polygon: manual mapping, green polygon: BTM-B4).</p>
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<p>Bathymetric map of the inner Gera Gulf with 2-m interval contours for a depth of 6 to 18 m.</p>
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<p>Polygons (reefs) produced using (<b>a</b>) manual, (<b>b</b>) BTM-B4, (<b>c</b>) BTM-B4S2 mapping, (<b>d</b>) CoMMa mapping, and (<b>e</b>) eCognition mapping.</p>
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<p>Bathymetric map of the Gera Gulf, with zoom-in areas (<b>i</b>–<b>iv</b>) showing the resulting polygons for all the methods (red polygons: manual, green: BTM-B4, blue: BTM-B4S2, magenta: CoMMa, yellow: eCognition).</p>
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<p>Categorization of the reef heights, created using (<b>a</b>) manual, (<b>b</b>) BTM-B4, (<b>c</b>) BTM-B4S2 mapping, (<b>d</b>) CoMMa mapping, and (<b>e</b>) eCognition mapping.</p>
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<p>Categorization of the reef area, created by (<b>a</b>) manual, (<b>b</b>) BTM-B4, (<b>c</b>) BTM-B4S2 mapping, (<b>d</b>) CoMMa mapping, and (<b>e</b>) eCognition mapping.</p>
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<p>Map of the reefs not detected using (<b>a</b>) manual BTM-B4 mapping, (<b>b</b>) using manual or BTM-B4S2 mapping, (<b>c</b>) using manual or CoMMa mapping, and (<b>d</b>) using manual or eCognition mapping.</p>
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<p>Mapcurve for GOF calculations using (<b>a</b>) manual as RF compared with BTM-B4, (<b>b</b>) manual as RF compared with BTM-B4S2, (<b>c</b>) manual as RF compared with CoMMa, and (<b>d</b>) manual as RF compared with eCognition.</p>
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10 pages, 1469 KiB  
Article
Machine Learning Models Leveraging Smartphone-Based Patient Mobility Data Can Accurately Predict Functional Outcomes After Spine Surgery
by Hasan S. Ahmad, Daksh Chauhan, Mert Marcel Dagli, Ryan W. Turlip, Malek Bashti, Ali Hamade, Patrick T. Wang, Yohannes Ghenbot, Andrew I. Yang, Gregory W. Basil, William C. Welch and Jang Won Yoon
J. Clin. Med. 2024, 13(21), 6515; https://doi.org/10.3390/jcm13216515 - 30 Oct 2024
Viewed by 373
Abstract
Objective: The development of adjacent segment disease or the progression of spondylosis following the surgical treatment of spinal stenosis and spondylolisthesis is well documented and can lead to subsequent functional decline after a successful index surgery. The early detection of negative inflection points [...] Read more.
Objective: The development of adjacent segment disease or the progression of spondylosis following the surgical treatment of spinal stenosis and spondylolisthesis is well documented and can lead to subsequent functional decline after a successful index surgery. The early detection of negative inflection points during patients’ functional recovery can improve timely intervention. In this study, we developed machine learning (ML) models to predict the occurrence of post-operative decline in patient mobility. Methods: Patients receiving spine surgery for degenerative spinal stenosis or spondylolisthesis were retroactively consented and enrolled. Activity data (steps-per-day) previously recorded across a 4-year peri-operative were collected alongside relevant clinical and demographic variables. Logistic regression (LR), random forest (RF), and extreme gradient boosting (XGBoost) ML models were constructed and trained on 80% of the dataset and validated using the remaining 20%. The study’s primary endpoint was the models’ ability to predict post-operative decline in patient mobility. Results: A total of 75 patients were included. Following training, RF and XGBoost models achieved accuracy values of 86.7% (sensitivity 80%, specificity 90%) and 80% (sensitivity 60%, specificity 90%), respectively, in predicting post-operative functional decline. The LR model was the least effective with an accuracy of 73.3% (sensitivity 50%, specificity 88.8%). Receiver operating characteristic curves showed an area under the curve of 0.80 for RF, 0.70 for XGBoost, and 0.69 for LR. Conclusions: ML models trained on activity data collected from smartphones successfully forecast functional decline in post-operative activity following spine surgery. These results lay the groundwork for the future integration of ML into the surgeon’s toolbox for prognostication and surgical planning. Full article
(This article belongs to the Special Issue Advances and Challenges in Spine Surgery)
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Figure 1
<p>An example patient’s activity (i.e., steps taken per day) is collected across a 4-year peri-operative window (<b>A</b>), smoothed and normalized to each individual’s pre-operative baseline (<b>B</b>), and subsequently segregated into distinct temporal epochs based on the activity magnitude and rate of change (<b>C</b>).</p>
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<p>Area under the receiver operating characteristic curve for random forest (<b>A</b>), extreme gradient boosting (XGBoost; (<b>B</b>)), and logistic regression (<b>C</b>) models.</p>
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<p>Feature importance for random forest (<b>A</b>) and extreme gradient boosting (XGBoost; (<b>B</b>)) models, the two decision tree algorithms implemented.</p>
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17 pages, 4541 KiB  
Article
Identification of Five Robust Novel Ene-Reductases from Thermophilic Fungi
by Pedro H. Damada and Marco W. Fraaije
Catalysts 2024, 14(11), 764; https://doi.org/10.3390/catal14110764 - 29 Oct 2024
Viewed by 512
Abstract
Ene-reductases (ERs) are enzymes known for catalyzing the asymmetric hydrogenation of activated alkenes. Among these, old yellow enzyme (OYE) ERs have been the most extensively studied for biocatalytic applications due to their dependence on NADH or NADPH as electron donors. These flavin-containing enzymes [...] Read more.
Ene-reductases (ERs) are enzymes known for catalyzing the asymmetric hydrogenation of activated alkenes. Among these, old yellow enzyme (OYE) ERs have been the most extensively studied for biocatalytic applications due to their dependence on NADH or NADPH as electron donors. These flavin-containing enzymes are highly enantio- and stereoselective, making them attractive biocatalysts for industrial use. To discover novel thermostable OYE-type ERs, we explored genomes of thermophilic fungi. Five genes encoding ERs were selected and expressed in Escherichia coli, namely AtOYE (from Aspergillus thermomutatus), CtOYE (from Chaetomium thermophilum), LtOYE (from Lachancea thermotolerans), OpOYE (from Ogatae polymorpha), and TtOYE (from Thermothielavioides terrestris). Each enzyme was purified as a soluble FMN-containing protein, allowing detailed characterization. All ERs exhibited a preference for NADPH, with AtOYE showing the broadest substrate range. Moreover, all the enzymes showed activity toward maleimide and p-benzoquinone, with TtOYE presenting the highest catalytic efficiency. The optimal pH for enzyme activity was between 6 and 7 and the enzymes displayed notable solvent tolerance and thermostability, with CtOYE and OpOYE showing the highest stability (Tm > 60 °C). Additionally, all enzymes converted R-carvone into (R,R)-dihydrocarvone. In summary, this study contributes to expanding the toolbox of robust ERs. Full article
(This article belongs to the Special Issue Enzyme and Biocatalysis Application)
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Graphical abstract

Graphical abstract
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<p>Asymmetric reduction of activated alkenes by ene–reductases (ERs).</p>
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<p>Phylogenic tree constructed using the protein sequences selected for this study and ERs described in the literature [<a href="#B7-catalysts-14-00764" class="html-bibr">7</a>]. The analysis involved 79 protein sequences. The enzymes of this study (AtOYE, CtOYE, LtOYE, OpOYE, and TtOYE) are tagged by small orange dots. OYE1 is tagged with a small yellow dot.</p>
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<p>Sequence alignment of AtOYE, CtOYE, LtOYE, OpOYE, TtOYE, and OYE1. Two regions are highlighted (yellow and gray shade), representing the patterns indicative for monomeric ERs, active site residues are in blue, and FMN-binding residues are in green letters. The letters in red were used to highlight amino acids different from OYE1. The symbol (*) denotes full conservation (identical residues across all sequences), (:) indicates strong conservation (similar residues with high chemical similarity), and (.) represents weak conservation (similar residues with low chemical similarity).</p>
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<p>Structures for AtOYE (<b>A</b>), CtOYE (<b>B</b>), LtOYE (<b>C</b>), OpOYE (<b>D</b>), TtOYE (<b>E</b>), and OYE1 (<b>F</b>), as predicted by AlphaFold2 (v2.3.1, DeepMind, London, UK). The figures were generated using Pymol (v2.5.2, Schrödinger, Inc., New York, NY, USA).</p>
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<p>Structures for AtOYE (<b>A</b>), CtOYE (<b>B</b>), LtOYE (<b>C</b>), OpOYE (<b>D</b>), TtOYE (<b>E</b>), and OYE1 (<b>F</b>), as predicted by AlphaFold2 (v2.3.1, DeepMind, London, UK). The figures were generated using Pymol (v2.5.2, Schrödinger, Inc., New York, NY, USA).</p>
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<p>Absorbance spectra obtained for AtOYE (<b>A</b>), CtOYE (<b>B</b>), LtOYE (<b>C</b>), OpOYE (<b>D</b>), and TtOYE (<b>E</b>). The continued line (–) represents the spectra of the native enzymes, and the spectra with the dashed line (--) were obtained upon unfolding.</p>
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<p>pH optima for AtOYE (<b>A</b>), CtOYE (<b>B</b>), LtOYE (<b>C</b>), OpOYE (<b>D</b>), and TtOYE (<b>E</b>).</p>
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<p>Effect of solvents on melting temperatures of ERs.</p>
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<p>Melting temperatures (T<sub>m</sub>) measured for ERs at different pH values.</p>
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16 pages, 5798 KiB  
Article
Voice Assessment in Patients with Amyotrophic Lateral Sclerosis: An Exploratory Study on Associations with Bulbar and Respiratory Function
by Pedro Santos Rocha, Nuno Bento, Hanna Svärd, Diana Monteiro Lopes, Sandra Hespanhol, Duarte Folgado, André Valério Carreiro, Mamede de Carvalho and Bruno Miranda
Brain Sci. 2024, 14(11), 1082; https://doi.org/10.3390/brainsci14111082 - 29 Oct 2024
Viewed by 401
Abstract
Background: Speech production is a possible way to monitor bulbar and respiratory functions in patients with amyotrophic lateral sclerosis (ALS). Moreover, the emergence of smartphone-based data collection offers a promising approach to reduce frequent hospital visits and enhance patient outcomes. Here, we studied [...] Read more.
Background: Speech production is a possible way to monitor bulbar and respiratory functions in patients with amyotrophic lateral sclerosis (ALS). Moreover, the emergence of smartphone-based data collection offers a promising approach to reduce frequent hospital visits and enhance patient outcomes. Here, we studied the relationship between bulbar and respiratory functions with voice characteristics of ALS patients, alongside a speech therapist’s evaluation, at the convenience of using a simple smartphone. Methods: For voice assessment, we considered a speech therapist’s standardized tool—consensus auditory-perceptual evaluation of voice (CAPE-V); and an acoustic analysis toolbox. The bulbar sub-score of the revised ALS functional rating scale (ALSFRS-R) was used, and pulmonary function measurements included forced vital capacity (FVC%), maximum expiratory pressure (MEP%), and maximum inspiratory pressure (MIP%). Correlation coefficients and both linear and logistic regression models were applied. Results: A total of 27 ALS patients (12 males; 61 years mean age; 28 months median disease duration) were included. Patients with significant bulbar dysfunction revealed greater CAPE-V scores in overall severity, roughness, strain, pitch, and loudness. They also presented slower speaking rates, longer pauses, and higher jitter values in acoustic analysis (all p < 0.05). The CAPE-V’s overall severity and sub-scores for pitch and loudness demonstrated significant correlations with MIP% and MEP% (all p < 0.05). In contrast, acoustic metrics (speaking rate, absolute energy, shimmer, and harmonic-to-noise ratio) significantly correlated with FVC% (all p < 0.05). Conclusions: The results provide supporting evidence for the use of smartphone-based recordings in ALS patients for CAPE-V and acoustic analysis as reliable correlates of bulbar and respiratory function. Full article
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<p>An example of voice sound wave analysis, encompassing the reading of phrase C (<b>a</b>,<b>b</b>), from the CAPE-V scale, and the sustainable phonation of the vowel /a/ (<b>c</b>,<b>d</b>); (<b>a</b>,<b>c</b>) were recorded from a single patient in a more advanced disease state (ALSFRS-R total score of 35), while (<b>b</b>,<b>d</b>) depict a patient in a less advanced disease state (ALSFRS-R total score of 46). Notably, even though only through visual observation, discernible distinctions between the two tasks emerge, being particularly more evident during the reading of phrase C. The sentence is presented in both Portuguese (the original language) and English to enhance readability.</p>
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<p>Differences in the normalized instrumental-based voice sound features, extracted from phrase C, between the group patients with (white) vs. without (gray) bulbar dysfunction. In general, patients with bulbar impairments experienced more pronounced effects on their speech, characterized by reduced speaking rates and extended durations of pauses. Correlation is significant at the 0.05 level *, 0.001 level **, and &lt;0.001 level ***.</p>
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<p>Differences in the normalized CAPE-V scores measures, extracted from phrase c, between the group patients with (white) vs. without (gray) bulbar dysfunction. Correlation is significant at the 0.05 level *, 0.001 level **, and &lt;0.001 level ***.</p>
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<p>Representation of the normalized jitter, a feature gauging frequency variability, extracted from sustained phonation of vowel /a/, contrasting with the group of ALS patients with bulbar dysfunction (white) vs. without (gray) bulbar dysfunction. Correlation is significant at the 0.05 level *.</p>
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19 pages, 5332 KiB  
Article
Enhancing Industrial Valve Diagnostics: Comparison of Two Preprocessing Methods on the Performance of a Stiction Detection Method Using an Artificial Neural Network
by Bhagya Rajesh Navada, Vemulapalli Sravani and Santhosh Krishnan Venkata
Appl. Syst. Innov. 2024, 7(6), 104; https://doi.org/10.3390/asi7060104 - 29 Oct 2024
Viewed by 512
Abstract
The detection and mitigation of stiction are crucial for maintaining control system performance. This paper proposes the comparison of two preprocessing methods for detecting stiction in control valves via pattern recognition via an artificial neural network (ANN). This method utilizes process variables (PVs) [...] Read more.
The detection and mitigation of stiction are crucial for maintaining control system performance. This paper proposes the comparison of two preprocessing methods for detecting stiction in control valves via pattern recognition via an artificial neural network (ANN). This method utilizes process variables (PVs) and controller outputs (OPs) to accurately identify stiction within control loops. The ANN was comprehensively trained using data from a data-driven model after processing them. Validation and testing were conducted with real industrial data from the International Stiction Database (ISDB), ensuring a practical assessment framework. This study evaluated the impact of two preprocessing methods on fault detection accuracy, namely, the D-value and principal component analysis (PCA) methods, where the D-value method achieved a commendable overall accuracy of 76%, with 86% precision in stiction prediction and a 66% success rate in nonstiction scenarios. This signifies that feature reduction leads to a degraded stiction detection. The data-driven model was implemented in SIMULINK, and the ANN was trained in MATLAB with the Pattern Recognition Toolbox. These promising results highlight the method’s reliability in diagnosing stiction in industrial settings. Integrating this technique into existing control systems is expected to enhance maintenance protocols, reduce operational downtime, and improve efficiency. Future research should aim to expand this method’s applicability to a wider range of control systems and operational conditions, further solidifying its industrial value. Full article
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<p>Pneumatic actuator fault categories.</p>
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<p>Stiction representation.</p>
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<p>A typical neural network with multiple layers.</p>
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<p>Block diagram showing the development of a neural network for fault detection. (<b>a</b>) Training phase. (<b>b</b>) Testing phase.</p>
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<p>Signal and logic flowchart for the data-driven stiction model.</p>
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<p>Open-loop simulation results of the data-driven stiction model.</p>
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<p>Closed-loop simulation results of the flow process with the data-driven stiction model.</p>
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<p>Closed-loop response of the system without any disturbances. (S = 5, J = 5).</p>
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<p>Closed-loop response of the system with Gaussian distributed noise (S = 5, J = 5).</p>
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<p>Process variable and controller output of chemical loop 1 (has stiction).</p>
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<p>D-value of CHEM loop 1 (has stiction).</p>
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<p>PCA of CHEM Loop 1 (has stiction).</p>
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<p>Matrix representation of the training data (input and output).</p>
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<p>Performance of different learning algorithms for D-values.</p>
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<p>Performance of different learning algorithms for PCA.</p>
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16 pages, 975 KiB  
Review
How Helpful May Be a CRISPR/Cas-Based System for Food Traceability?
by Silvia Farinati, Aurélien Devillars, Giovanni Gabelli, Alessandro Vannozzi, Francesco Scariolo, Fabio Palumbo and Gianni Barcaccia
Foods 2024, 13(21), 3397; https://doi.org/10.3390/foods13213397 - 25 Oct 2024
Viewed by 728
Abstract
Genome editing (GE) technologies have the potential to completely transform breeding and biotechnology applied to crop species, contributing to the advancement of modern agriculture and influencing the market structure. To date, the GE-toolboxes include several distinct platforms able to induce site-specific and predetermined [...] Read more.
Genome editing (GE) technologies have the potential to completely transform breeding and biotechnology applied to crop species, contributing to the advancement of modern agriculture and influencing the market structure. To date, the GE-toolboxes include several distinct platforms able to induce site-specific and predetermined genomic modifications, introducing changes within the existing genetic blueprint of an organism. For these reasons, the GE-derived approaches are considered like new plant breeding methods, known also as New Breeding Techniques (NBTs). Particularly, the GE-based on CRISPR/Cas technology represents a considerable improvement forward biotech-related techniques, being highly sensitive, precise/accurate, and straightforward for targeted gene editing in a reliable and reproducible way, with numerous applications in food-related plants. Furthermore, numerous examples of CRISPR/Cas system exploitation for non-editing purposes, ranging from cell imaging to gene expression regulation and DNA assembly, are also increasing, together with recent engagements in target and multiple chemical detection. This manuscript aims, after providing a general overview, to focus attention on the main advances of CRISPR/Cas-based systems into new frontiers of non-editing, presenting and discussing the associated implications and their relative impacts on molecular traceability, an aspect closely related to food safety, which increasingly arouses general interest within public opinion and the scientific community. Full article
(This article belongs to the Section Food Systems)
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<p>Simple graphical representation of the main genome editing mechanisms based on the CRISPR/Cas9 tool: single-base mutation (“base editing” for gene knockout or silencing applications) and exogenous fragment insertion (“prime editing” for gene replacement applications). The Cas9 recognizes the target sequence thanks to the specific gRNA it is carrying. The two RuvC nuclease domains of the Cas9 each cleave one strand of the sequence, leading to the formation of a double-strand break in the target sequence, which will be repaired by the NHEJ complexes, sometimes generating point-mutations, called in that case base edition. In the case where an exogenous fragment whose extremities match with the region of the double-strand break is present in the cell contemporaneously to the cleavage, it may be incorporated by the HR system at the place of the double-strand break, allowing for what is called prime editing.</p>
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<p>The CRISPR/Cas9 system can be used for molecular traceability purposes. Sample enrichment in target sequence: A pool of chromatin fragments is incubated with a catalytically inactive dCas9 fused with a biotin and carrying a specific gRNA. Afterwards, the dCas9 and the fragments that are bound to it are precipitated thanks to streptavidin-coated magnetic beads. Then, the nature of the precipitated chromatin fragments is assessed by DNA-sequencing or by qPCR. Direct detection of the target sequence: A pool of chromatin fragments is incubated with a catalytically active Cas12a fused with a biotin and carrying a specific gRNA along with single-stranded DNA probes associated with fluorophores. Recognizing its target sequence among the chromatin-pool activates the sequence-independent single-stranded DNA nuclease activity of the Cas12a, which will allow it to cleave the single-stranded DNA probes, which will induce the activation of the fluorophores, emitting a luminous signal that is interpreted as evidence of the presence of the target sequence in the pool. The details are reported in the text.</p>
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28 pages, 5354 KiB  
Review
CFO (Chief Financial Officer) Research: A Systematic Review Using the Bibliometric Toolbox
by Umra Rashid, Mohd Abdullah, Mosab I. Tabash, Ishrat Naaz, Javaid Akhter and Mujeeb Saif Mohsen Al-Absy
J. Risk Financial Manag. 2024, 17(11), 482; https://doi.org/10.3390/jrfm17110482 - 25 Oct 2024
Viewed by 803
Abstract
The chief financial officer (CFO) is a crucial executive position in an organisation, responsible for overseeing the financial operations and strategy of the company. Despite rising interest among academics and practitioners, the literature corpus on CFO research remains largely fragmented, which warrants the [...] Read more.
The chief financial officer (CFO) is a crucial executive position in an organisation, responsible for overseeing the financial operations and strategy of the company. Despite rising interest among academics and practitioners, the literature corpus on CFO research remains largely fragmented, which warrants the unpacking of the underlying intellectual knowledge structure of the domain. In response, this study aims to provide a concise overview of the trends and science relating to CFO research, comprehend potential gaps in the literature, and highlight crucial future research pathways. A quantitative bibliometric overview of 669 research articles from 1982 to 2022 provides a spectrum of intellectual clout that helps decipher performance trends and delineates six significant clusters of knowledge in CFO research. We selectively discuss the empirical findings and theoretical and conceptual advancements within each cluster. This study offers recommendations for future research, emphasising the growing role of CFOs in leadership and addressing the fragmentation in current research. The findings and contributions of this study could further elevate CFOs’ importance in the C-suite. Full article
(This article belongs to the Special Issue Featured Papers in Corporate Finance and Governance)
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<p>Overview of the methodology adopted for the paper. Source: researcher’s own elaboration.</p>
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<p>Country-wise publications using heatmap.</p>
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<p>CFO research between 1982 and 1999 using word cloud from the <span class="html-italic">Bibliometrix</span>-R software.</p>
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<p>CFO research between 1992 and 2001 using word cloud from the <span class="html-italic">Bibliometrix</span>-R software.</p>
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<p>CFO research between 2002 and 2011 using word cloud from <span class="html-italic">Bibliometrix</span>-R software.</p>
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<p>CFO research between 2012 and 2022 using word cloud from <span class="html-italic">Bibliometrix</span>-R software.</p>
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<p>Bibliographic coupling of the themes using VOSviewer.</p>
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<p>Future research directions. Source: researcher’s own elaboration.</p>
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15 pages, 7578 KiB  
Article
Optical Genome Mapping for Detection of BCR::ABL1—Another Tool in Our Toolbox
by Zhenya Tang, Wei Wang, Gokce A. Toruner, Shimin Hu, Hong Fang, Jie Xu, M. James You, L. Jeffrey Medeiros, Joseph D. Khoury and Guilin Tang
Genes 2024, 15(11), 1357; https://doi.org/10.3390/genes15111357 - 22 Oct 2024
Viewed by 516
Abstract
Background: BCR::ABL1 fusion is mostly derived from a reciprocal translocation t(9;22)(q34.1;q11.2) and is rarely caused by insertion. Various methods have been used for the detection of t(9;22)/BCR::ABL1, such as G-banded chromosomal analysis, fluorescence in situ hybridization (FISH), quantitative real-time reverse [...] Read more.
Background: BCR::ABL1 fusion is mostly derived from a reciprocal translocation t(9;22)(q34.1;q11.2) and is rarely caused by insertion. Various methods have been used for the detection of t(9;22)/BCR::ABL1, such as G-banded chromosomal analysis, fluorescence in situ hybridization (FISH), quantitative real-time reverse transcription-polymerase chain reaction (RT-PCR) and optical genome mapping (OGM). Understanding the strengths and limitations of each method is essential for the selection of appropriate method(s) of disease diagnosis and/or during the follow-up. Methods: We compared the results of OGM, chromosomal analysis, FISH, and/or RT-PCR in 12 cases with BCR::ABL1. Results: BCR:ABL1 was detected by FISH and RT-PCR in all 12 cases. One case with ins(22;9)/BCR::ABL1 was cryptic by chromosomal analysis and nearly missed by OGM. Atypical FISH signal patterns were observed in five cases, suggesting additional chromosomal aberrations involving chromosomes 9 and/or 22. RT-PCR identified the transcript isoforms p210 and p190 in seven and five cases, respectively. Chromosomal analysis revealed additional chromosomal aberrations in seven cases. OGM identified extra cytogenomic abnormalities in 10 cases, including chromoanagenesis and IKZF1 deletion, which were only detected by OGM. Conclusions: FISH offers rapid and definitive detection of BCR::ABL1 fusion, while OGM provides a comprehensive cytogenomic analysis. In scenarios where OGM is feasible, chromosomal analysis and RT-PCR may not offer additional diagnostic value. Full article
(This article belongs to the Special Issue Clinical Molecular Genetics in Hematologic Diseases)
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<p>Cytogenetic analyses by three methods in case #6. (<b>A</b>) Chromosomal analysis indicated aberrations involving chromosomes 1, 9, and 22 (indicated with blue arrow) and their homologs, respectively. (<b>B</b>) FISH analysis using <span class="html-italic">BCR/ABL1/ASS</span> tri-color dual-fusion probes indicated neither <span class="html-italic">BCR</span> nor <span class="html-italic">ABL1</span> signal translocated to chromosome 1 (upper). Whole chromosome painting (wcp) 22 indicated that only the normal and abnormal chromosomes 22 were stained, indicating no chromosome 22 material translocated to chromosomes 1 or 9 (lower). (<b>C</b>) Circus plot of OGM showing t(1;9), t(9;22) and del(16q). (<b>D</b>) Breakpoints of <span class="html-italic">BCR</span> on chromosome 22 (red arrows) and breakpoints of <span class="html-italic">ABL1</span> and <span class="html-italic">EHMT1</span> on chromosome 9 (green arrows), indicating that the <span class="html-italic">BCR::ABL1</span> is derived from an insertion of DNA segment from <span class="html-italic">3′ABL1</span> to <span class="html-italic">5′EHMT1</span> (about 6.8 Mbp) into <span class="html-italic">BCR</span>. (<b>E</b>) Details of der(1), der(9), and der(22).</p>
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<p>Unusual OGM findings in case #9. (<b>A</b>) A deletion involving <span class="html-italic">3′ABL1</span> (breakpoint was between exon1 and exon 2) and its flanking region. (<b>B</b>) A deletion of about 2.7 Mbp involving <span class="html-italic">BCR</span> and its flanking region. However, a gain of 22q11.2 was also observed (the purple bar on the top). (<b>C</b>) Manual alignment showing that molecules contained <span class="html-italic">BCR::ABL1</span>, derived from an insertion of approximately 100 Kbp fragment containing <span class="html-italic">3′ABL1</span> and its flanking region.</p>
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<p>A comparison of chromosomal analysis and OGM assay in case #7. (<b>A</b>) Chromosomal analysis indicated a balanced t(9;22)(q34;q11.2) and a psu dic(13;12)(q34;p11.1), as indicated by arrows. (<b>B</b>) Circos plot of OGM assay indicated a t(9;22), a t(5;12), and a t(5;13) at the same 5q33.3 band level, an apparent del(12p) and a del(5q) of small size, likely suggesting unbalanced three-way translocation t(5;12;13) in addition to the t(9;22)/<span class="html-italic">BCR::ABL1</span> aberration.</p>
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<p>Cytogenetic analyses by three methods in case #8. (<b>A</b>) Chromosomal analysis showed a karyotype of 47,XX,-7+8,t(9;22)(q34;q11.2),+mar, indicated by arrows (m: marker chromosome). (<b>B</b>) FISH analysis using <span class="html-italic">CDKN2A/CEP9</span> probe set showed the marker chromosome containing two copies of <span class="html-italic">CDKN2A/CEP9</span> signals (red arrow). (<b>C</b>) OGM confirmed all the abnormalities of t(9;22), -7, and +8, as well as four copies of 9p24.3 to q21.11, an idic(9)(q21.11) aberration for the marker chromosome by chromosomal analysis.</p>
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<p>The reported breakpoints of <span class="html-italic">ABL1</span> and <span class="html-italic">BCR</span> obtained using OGM assay were shown in UCSC Genome Browser in five cases in this cohort (case #1: purple; case #5: green; case #6: orange; case #8: blue; and case #10: red), and their putative isoforms were postulated in each case (<a href="#genes-15-01357-t003" class="html-table">Table 3</a>).</p>
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12 pages, 2930 KiB  
Article
Ultrasonic A-Scan Signals Data Augmentation Using Electromechanical System Modelling to Enhance Cataract Classification Methods
by Mário J. Santos, Lorena I. Petrella, Fernando Perdigão and Jaime Santos
Electronics 2024, 13(21), 4144; https://doi.org/10.3390/electronics13214144 - 22 Oct 2024
Viewed by 468
Abstract
The use of artificial intelligence in diverse diagnosis areas has significantly increased in the past few years because of the advantages it represents in clinical routine. Among the diverse diagnostic techniques, the use of ultrasounds is often preferred because of their simplicity, low [...] Read more.
The use of artificial intelligence in diverse diagnosis areas has significantly increased in the past few years because of the advantages it represents in clinical routine. Among the diverse diagnostic techniques, the use of ultrasounds is often preferred because of their simplicity, low cost, non-invasiveness, and non-ionizing characteristic. However, obtaining an adequate number of patients and data for training and testing machine learning models is challenging. To overcome this limitation, a novel approach is proposed for simulating data produced by ultrasonic diagnostic devices. The implemented method was based on a clinical prototype for eye cataract diagnosis, although the method can be extended to other applications as well. The proposed model encompasses the electric-to-acoustic signal conversion in the ultrasonic transducer, the wave propagation through the biological medium, and the subsequent acoustic-to-electric signal conversion in the transducer. Electrical modelling of the transducer was performed using a two-port network approach, while the acoustic wave propagation was modelled by using the k-Wave MATLAB toolbox. It was verified that the holistic modelling approach enabled the generation of synthetic data augmentation, presenting high similarity with real data. Full article
(This article belongs to the Special Issue Feature Papers in Circuit and Signal Processing)
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<p>Computational grids: 2D (<b>a</b>) and 3D (<b>b</b>). Components: cornea surface (yellow), cornea (green), aqueous humor (light blue), lens (purple), and vitreous humor (red). Outer limits of the eye in 2D grid (black and light grey).</p>
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<p>Electric circuit models for the pulse-echo system. (<b>a</b>) Emitter stage (<span class="html-italic">F</span> = 0); (<b>b</b>) Receiver stage (<span class="html-italic">V<sub>in</sub></span> = 0); (<b>c</b>,<b>d</b>) Simplification of the equivalent circuits to the primary side of the transformer for the emitter and the receiver stages, respectively. <span class="html-italic">V<sub>in</sub></span> is the excitation voltage source and <span class="html-italic">Z<sub>i</sub></span> its output impedance; <span class="html-italic">Z<sub>E</sub></span> and <span class="html-italic">Z<sub>m</sub></span> are the electric and mechanical impedances of the transducer; <span class="html-italic">ϕ</span> is equivalent to a transform ratio; <span class="html-italic">V</span><sub>1</sub> and <span class="html-italic">I</span><sub>1</sub> are the voltage and the current on the electrical side; <span class="html-italic">F</span><sub>1</sub> and <span class="html-italic">U</span><sub>1</sub> are the force and transducer surface velocity on the acoustic side; <span class="html-italic">Z<sub>L</sub></span> is the low-noise amplifier (LNA) input impedance.</p>
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<p>Signals used to validate the implemented model: (<b>a</b>) Electrical excitation signal <span class="html-italic">v</span><sub>1</sub>(<span class="html-italic">t</span>); (<b>b</b>) Simulated echo signal <span class="html-italic">p</span><sub>2</sub>(<span class="html-italic">t</span>) reflected in a flat metal plate; (<b>c</b>) Electrical echo signal from the reflector <span class="html-italic">v</span><sub>2</sub>(<span class="html-italic">t</span>); (<b>d</b>) Experimental and estimated received signals according to Equation (7).</p>
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<p>Signals used to validate the implemented model: (<b>a</b>) Electrical excitation signal <span class="html-italic">v</span><sub>1</sub>(<span class="html-italic">t</span>); (<b>b</b>) Simulated echo signal <span class="html-italic">p</span><sub>2</sub>(<span class="html-italic">t</span>) reflected in a flat metal plate; (<b>c</b>) Electrical echo signal from the reflector <span class="html-italic">v</span><sub>2</sub>(<span class="html-italic">t</span>); (<b>d</b>) Experimental and estimated received signals according to Equation (7).</p>
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<p>Transfer functions obtained when a flat reflector is placed at the focus of the transducer: (<b>a</b>) <span class="html-italic">H</span>(<span class="html-italic">s</span>); (<b>b</b>) <span class="html-italic">H</span><sub>2</sub>(<span class="html-italic">s</span>).</p>
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<p>Impulse response <span class="html-italic">h</span><sub>2</sub>(<span class="html-italic">t</span>) as the inverse Fourier transform of <span class="html-italic">H</span><sub>2</sub>(<span class="html-italic">jω</span>) shown in <a href="#electronics-13-04144-f004" class="html-fig">Figure 4</a>b.</p>
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<p>(<b>a</b>) Real signal from a healthy lens, <span class="html-italic">v</span><sub>2</sub>(<span class="html-italic">t</span>). (<b>b</b>) Estimated signal from a healthy lens, <math display="inline"><semantics> <mrow> <msub> <mover accent="true"> <mi>v</mi> <mo>^</mo> </mover> <mn>2</mn> </msub> <mfenced> <mi>t</mi> </mfenced> </mrow> </semantics></math>. The figures also show the pulse square integration with a window of 1 μs (red line) and points corresponding to 10% and 90% of the rise time (circles in red and blue, respectively).</p>
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<p>Estimated signal <math display="inline"><semantics> <mrow> <msub> <mover accent="true"> <mi>v</mi> <mo>^</mo> </mover> <mn>2</mn> </msub> <mfenced> <mi>t</mi> </mfenced> </mrow> </semantics></math> from a cataractous lens.</p>
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36 pages, 11788 KiB  
Article
Intelligent Robust Controllers Applied to an Auxiliary Energy System for Electric Vehicles
by Mario Antonio Ruz Canul, Jose A. Ruz-Hernandez, Alma Y. Alanis, Jose-Luis Rullan-Lara, Ramon Garcia-Hernandez and Jaime R. Vior-Franco
World Electr. Veh. J. 2024, 15(10), 479; https://doi.org/10.3390/wevj15100479 - 21 Oct 2024
Viewed by 797
Abstract
This paper presents two intelligent robust control strategies applied to manage the dynamics of a DC-DC bidirectional buck–boost converter, which is used in conjunction with a supercapacitor as an auxiliary energy system (AES) for regenerative braking in electric vehicles. The Neural Inverse Optimal [...] Read more.
This paper presents two intelligent robust control strategies applied to manage the dynamics of a DC-DC bidirectional buck–boost converter, which is used in conjunction with a supercapacitor as an auxiliary energy system (AES) for regenerative braking in electric vehicles. The Neural Inverse Optimal Controller (NIOC) and the Neural Sliding Mode Controller (NSMC) utilize identifiers based on Recurrent High-Order Neural Networks (RHONNs) trained with the Extended Kalman Filter (EKF) to track voltage and current references from the converter circuit. Additionally, a driving cycle test tailored specifically for typical urban driving in electric vehicles (EVs) is implemented to validate the efficacy of the proposed controller and energy improvement strategy. The proposed NSMC and NIOC are compared with a PI controller; furthermore, an induction motor and its corresponding three-phase inverter are incorporated into the EV control scheme which is implemented in Matlab/Simulink using the “Simscape Electrical” toolbox. The Mean Squared Error (MSE) is computed to validate the performance of the neural controllers. Additionally, the improvement in the State of Charge (SOC) for an electric vehicle battery through the control of buck–boost converter dynamics is addressed. Finally, several robustness tests against parameter changes in the converter are conducted, along with their corresponding performance indices. Full article
(This article belongs to the Special Issue Power and Energy Systems for E-mobility)
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<p>Bidirectional buck–boost converter circuit. Adapted from Ref. [<a href="#B10-wevj-15-00479" class="html-bibr">10</a>].</p>
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<p>(<b>a</b>) Buck operation mode circuit, (<b>b</b>) boost operation mode circuit. Adapted from Ref. [<a href="#B10-wevj-15-00479" class="html-bibr">10</a>].</p>
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<p>EV architecture. Adapted from Ref. [<a href="#B10-wevj-15-00479" class="html-bibr">10</a>].</p>
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<p>Neural identification representation with EKF. Adapted from Ref. [<a href="#B10-wevj-15-00479" class="html-bibr">10</a>].</p>
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<p>Continuous-time system trajectory when SMC is applied. Adapted from Ref. [<a href="#B10-wevj-15-00479" class="html-bibr">10</a>].</p>
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<p>Regenerative braking system control representation. Adapted from Ref. [<a href="#B10-wevj-15-00479" class="html-bibr">10</a>].</p>
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<p>Representative EV urban driving cycle.</p>
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<p>Trajectory tracking of voltage with NIOC <math display="inline"><semantics> <msub> <mi>X</mi> <mn>1</mn> </msub> </semantics></math>.</p>
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<p>Trajectory tracking of current with NIOC <math display="inline"><semantics> <msub> <mi>X</mi> <mn>2</mn> </msub> </semantics></math>.</p>
Full article ">Figure 10
<p>Control signals. (<b>a</b>) Control signal of <math display="inline"><semantics> <mrow> <msub> <mi>u</mi> <mrow> <mi>N</mi> <mi>I</mi> <mi>O</mi> <mi>C</mi> </mrow> </msub> <msub> <mi>x</mi> <mrow> <mn>1</mn> <mo>,</mo> <mi>k</mi> </mrow> </msub> </mrow> </semantics></math>, (<b>b</b>) zoom of (<b>a</b>), (<b>c</b>) control signal of <math display="inline"><semantics> <mrow> <msub> <mi>u</mi> <mrow> <mi>N</mi> <mi>I</mi> <mi>O</mi> <mi>C</mi> </mrow> </msub> <msub> <mi>x</mi> <mrow> <mn>2</mn> <mo>,</mo> <mi>k</mi> </mrow> </msub> </mrow> </semantics></math>, (<b>d</b>) zoom of (<b>c</b>).</p>
Full article ">Figure 11
<p>(<b>a</b>) Weights adjustment of the identification with NIOC, (<b>b</b>) Zoom of (<b>a</b>).</p>
Full article ">Figure 12
<p>(<b>a</b>) State of Charge of the battery comparison with and without AES using NIOC, (<b>b</b>) Zoom of (<b>a</b>).</p>
Full article ">Figure 13
<p>Trajectory tracking of voltage with NSMC <math display="inline"><semantics> <msub> <mi>X</mi> <mn>1</mn> </msub> </semantics></math>.</p>
Full article ">Figure 14
<p>Trajectory tracking of current with NSMC <math display="inline"><semantics> <msub> <mi>X</mi> <mn>2</mn> </msub> </semantics></math>.</p>
Full article ">Figure 15
<p>Control signals. (<b>a</b>) Control signal of <math display="inline"><semantics> <mrow> <msub> <mi>u</mi> <mi>c</mi> </msub> <msub> <mi>x</mi> <mrow> <mn>1</mn> <mo>,</mo> <mi>k</mi> </mrow> </msub> </mrow> </semantics></math>, (<b>b</b>) zoom of (<b>a</b>), (<b>c</b>) control signal of <math display="inline"><semantics> <mrow> <msub> <mi>u</mi> <mi>c</mi> </msub> <msub> <mi>x</mi> <mrow> <mn>2</mn> <mo>,</mo> <mi>k</mi> </mrow> </msub> </mrow> </semantics></math>, (<b>d</b>) zoom of (<b>c</b>).</p>
Full article ">Figure 16
<p>(<b>a</b>) Weights adjustment of the identification, (<b>b</b>) zoom of (<b>a</b>).</p>
Full article ">Figure 17
<p>(<b>a</b>) State of charge of the battery comparison with and without AES, (<b>b</b>) zoom of (<b>a</b>).</p>
Full article ">Figure 18
<p>(<b>a</b>) Comparison of voltage trajectory tracking with NSMC and PI, (<b>b</b>) zoom of the first 30 seconds of (<b>a</b>), (<b>c</b>) zoom of [450, 500] seconds of (<b>a</b>).</p>
Full article ">Figure 19
<p>(<b>a</b>) Voltage trajectory tracking with PI, (<b>b</b>) zoom of figure (<b>a</b>).</p>
Full article ">Figure 20
<p>(<b>a</b>) Current trajectory tracking with PI, (<b>b</b>) zoom of figure (<b>a</b>).</p>
Full article ">Figure 21
<p>The tracking of <math display="inline"><semantics> <msub> <mi>V</mi> <mrow> <mi>c</mi> <mi>r</mi> </mrow> </msub> </semantics></math> with inductor <math display="inline"><semantics> <mrow> <mi>L</mi> <mo>=</mo> <mn>13</mn> <mo>×</mo> <msup> <mn>10</mn> <mrow> <mo>−</mo> <mn>1</mn> </mrow> </msup> <mi>H</mi> </mrow> </semantics></math> with NIOC.</p>
Full article ">Figure 22
<p>The tracking of <math display="inline"><semantics> <msub> <mi>i</mi> <mrow> <mi>r</mi> <mi>e</mi> <mi>f</mi> <mi>e</mi> <mi>r</mi> <mi>e</mi> <mi>n</mi> <mi>c</mi> <mi>e</mi> </mrow> </msub> </semantics></math> with inductor <math display="inline"><semantics> <mrow> <mi>L</mi> <mo>=</mo> <mn>13</mn> <mo>×</mo> <msup> <mn>10</mn> <mrow> <mo>−</mo> <mn>1</mn> </mrow> </msup> <mi>H</mi> </mrow> </semantics></math> with NIOC.</p>
Full article ">Figure 23
<p>The tracking of <math display="inline"><semantics> <msub> <mi>V</mi> <mrow> <mi>c</mi> <mi>r</mi> </mrow> </msub> </semantics></math> with inductor <math display="inline"><semantics> <mrow> <mi>L</mi> <mo>=</mo> <mn>13</mn> <mo>×</mo> <msup> <mn>10</mn> <mrow> <mo>−</mo> <mn>2</mn> </mrow> </msup> <mi>H</mi> </mrow> </semantics></math> with NIOC.</p>
Full article ">Figure 24
<p>The tracking of <math display="inline"><semantics> <msub> <mi>i</mi> <mrow> <mi>r</mi> <mi>e</mi> <mi>f</mi> <mi>e</mi> <mi>r</mi> <mi>e</mi> <mi>n</mi> <mi>c</mi> <mi>e</mi> </mrow> </msub> </semantics></math> with inductor <math display="inline"><semantics> <mrow> <mi>L</mi> <mo>=</mo> <mn>13</mn> <mo>×</mo> <msup> <mn>10</mn> <mrow> <mo>−</mo> <mn>2</mn> </mrow> </msup> <mi>H</mi> </mrow> </semantics></math> with NIOC.</p>
Full article ">Figure 25
<p>The tracking of <math display="inline"><semantics> <msub> <mi>V</mi> <mrow> <mi>c</mi> <mi>r</mi> </mrow> </msub> </semantics></math> with inductor <math display="inline"><semantics> <mrow> <mi>L</mi> <mo>=</mo> <mn>65</mn> <mo>×</mo> <msup> <mn>10</mn> <mrow> <mo>−</mo> <mn>1</mn> </mrow> </msup> <mi>H</mi> </mrow> </semantics></math> with NIOC.</p>
Full article ">Figure 26
<p>The tracking of <math display="inline"><semantics> <msub> <mi>i</mi> <mrow> <mi>r</mi> <mi>e</mi> <mi>f</mi> <mi>e</mi> <mi>r</mi> <mi>e</mi> <mi>n</mi> <mi>c</mi> <mi>e</mi> </mrow> </msub> </semantics></math> with inductor <math display="inline"><semantics> <mrow> <mi>L</mi> <mo>=</mo> <mn>65</mn> <mo>×</mo> <msup> <mn>10</mn> <mrow> <mo>−</mo> <mn>1</mn> </mrow> </msup> <mi>H</mi> </mrow> </semantics></math> with NIOC.</p>
Full article ">Figure 27
<p>The tracking of <math display="inline"><semantics> <msub> <mi>V</mi> <mrow> <mi>c</mi> <mi>r</mi> </mrow> </msub> </semantics></math> with inductor <math display="inline"><semantics> <mrow> <mi>L</mi> <mo>=</mo> <mn>13</mn> <mo>×</mo> <msup> <mn>10</mn> <mrow> <mo>−</mo> <mn>1</mn> </mrow> </msup> <mi>H</mi> </mrow> </semantics></math> and <math display="inline"><semantics> <mrow> <msub> <mi>C</mi> <mn>1</mn> </msub> <mo>=</mo> <mn>4</mn> <mo>×</mo> <msup> <mn>10</mn> <mrow> <mo>−</mo> <mn>3</mn> </mrow> </msup> <mi>F</mi> </mrow> </semantics></math> with NIOC.</p>
Full article ">Figure 28
<p>The tracking of <math display="inline"><semantics> <msub> <mi>i</mi> <mrow> <mi>r</mi> <mi>e</mi> <mi>f</mi> <mi>e</mi> <mi>r</mi> <mi>e</mi> <mi>n</mi> <mi>c</mi> <mi>e</mi> </mrow> </msub> </semantics></math> with inductor <math display="inline"><semantics> <mrow> <mi>L</mi> <mo>=</mo> <mn>13</mn> <mo>×</mo> <msup> <mn>10</mn> <mrow> <mo>−</mo> <mn>1</mn> </mrow> </msup> <mi>H</mi> </mrow> </semantics></math> and <math display="inline"><semantics> <mrow> <msub> <mi>C</mi> <mn>1</mn> </msub> <mo>=</mo> <mn>4</mn> <mo>×</mo> <msup> <mn>10</mn> <mrow> <mo>−</mo> <mn>3</mn> </mrow> </msup> <mi>F</mi> </mrow> </semantics></math> with NIOC.</p>
Full article ">Figure 29
<p>The tracking of <math display="inline"><semantics> <msub> <mi>V</mi> <mrow> <mi>c</mi> <mi>r</mi> </mrow> </msub> </semantics></math> with inductor <math display="inline"><semantics> <mrow> <mi>L</mi> <mo>=</mo> <mn>13</mn> <mo>×</mo> <msup> <mn>10</mn> <mrow> <mo>−</mo> <mn>2</mn> </mrow> </msup> <mi>H</mi> </mrow> </semantics></math> and <math display="inline"><semantics> <mrow> <msub> <mi>C</mi> <mn>1</mn> </msub> <mo>=</mo> <mn>4</mn> <mo>×</mo> <msup> <mn>10</mn> <mrow> <mo>−</mo> <mn>7</mn> </mrow> </msup> <mi>F</mi> </mrow> </semantics></math> with NIOC.</p>
Full article ">Figure 30
<p>The tracking of <math display="inline"><semantics> <msub> <mi>i</mi> <mrow> <mi>r</mi> <mi>e</mi> <mi>f</mi> <mi>e</mi> <mi>r</mi> <mi>e</mi> <mi>n</mi> <mi>c</mi> <mi>e</mi> </mrow> </msub> </semantics></math> with inductor <math display="inline"><semantics> <mrow> <mi>L</mi> <mo>=</mo> <mn>13</mn> <mo>×</mo> <msup> <mn>10</mn> <mrow> <mo>−</mo> <mn>2</mn> </mrow> </msup> <mi>H</mi> </mrow> </semantics></math> and <math display="inline"><semantics> <mrow> <msub> <mi>C</mi> <mn>1</mn> </msub> <mo>=</mo> <mn>4</mn> <mo>×</mo> <msup> <mn>10</mn> <mrow> <mo>−</mo> <mn>7</mn> </mrow> </msup> <mi>F</mi> </mrow> </semantics></math> with NIOC.</p>
Full article ">Figure 31
<p>The tracking of <math display="inline"><semantics> <msub> <mi>V</mi> <mrow> <mi>c</mi> <mi>r</mi> </mrow> </msub> </semantics></math> with all changes in inductor <span class="html-italic">L</span> and capacitor <math display="inline"><semantics> <msub> <mi>C</mi> <mn>1</mn> </msub> </semantics></math> with NIOC.</p>
Full article ">Figure 32
<p>The tracking of <math display="inline"><semantics> <msub> <mi>i</mi> <mrow> <mi>r</mi> <mi>e</mi> <mi>f</mi> <mi>e</mi> <mi>r</mi> <mi>e</mi> <mi>n</mi> <mi>c</mi> <mi>e</mi> </mrow> </msub> </semantics></math> with all changes in inductor <span class="html-italic">L</span> and capacitor <math display="inline"><semantics> <msub> <mi>C</mi> <mn>1</mn> </msub> </semantics></math> with NIOC.</p>
Full article ">Figure 33
<p>The tracking of <math display="inline"><semantics> <msub> <mi>V</mi> <mrow> <mi>c</mi> <mi>r</mi> </mrow> </msub> </semantics></math> with inductor <math display="inline"><semantics> <mrow> <mi>L</mi> <mo>=</mo> <mn>13</mn> <mo>×</mo> <msup> <mn>10</mn> <mrow> <mo>−</mo> <mn>2</mn> </mrow> </msup> <mi>H</mi> </mrow> </semantics></math> with NSMC.</p>
Full article ">Figure 34
<p>The tracking of <math display="inline"><semantics> <msub> <mi>i</mi> <mrow> <mi>r</mi> <mi>e</mi> <mi>f</mi> <mi>e</mi> <mi>r</mi> <mi>e</mi> <mi>n</mi> <mi>c</mi> <mi>e</mi> </mrow> </msub> </semantics></math> with inductor <math display="inline"><semantics> <mrow> <mi>L</mi> <mo>=</mo> <mn>13</mn> <mo>×</mo> <msup> <mn>10</mn> <mrow> <mo>−</mo> <mn>2</mn> </mrow> </msup> <mi>H</mi> </mrow> </semantics></math> with NSMC.</p>
Full article ">Figure 35
<p>The tracking of <math display="inline"><semantics> <msub> <mi>V</mi> <mrow> <mi>c</mi> <mi>r</mi> </mrow> </msub> </semantics></math> with inductor <math display="inline"><semantics> <mrow> <mi>L</mi> <mo>=</mo> <mn>65</mn> <mo>×</mo> <msup> <mn>10</mn> <mrow> <mo>−</mo> <mn>1</mn> </mrow> </msup> <mi>H</mi> </mrow> </semantics></math> with NSMC.</p>
Full article ">Figure 36
<p>The tracking of <math display="inline"><semantics> <msub> <mi>i</mi> <mrow> <mi>r</mi> <mi>e</mi> <mi>f</mi> <mi>e</mi> <mi>r</mi> <mi>e</mi> <mi>n</mi> <mi>c</mi> <mi>e</mi> </mrow> </msub> </semantics></math> with inductor <math display="inline"><semantics> <mrow> <mi>L</mi> <mo>=</mo> <mn>65</mn> <mo>×</mo> <msup> <mn>10</mn> <mrow> <mo>−</mo> <mn>1</mn> </mrow> </msup> <mi>H</mi> </mrow> </semantics></math> with NSMC.</p>
Full article ">Figure 37
<p>The tracking of <math display="inline"><semantics> <msub> <mi>V</mi> <mrow> <mi>c</mi> <mi>r</mi> </mrow> </msub> </semantics></math> with inductor <math display="inline"><semantics> <mrow> <mi>L</mi> <mo>=</mo> <mn>13</mn> <mo>×</mo> <msup> <mn>10</mn> <mrow> <mo>−</mo> <mn>1</mn> </mrow> </msup> <mi>H</mi> </mrow> </semantics></math> and <math display="inline"><semantics> <mrow> <msub> <mi>C</mi> <mn>1</mn> </msub> <mo>=</mo> <mn>4</mn> <mo>×</mo> <msup> <mn>10</mn> <mrow> <mo>−</mo> <mn>3</mn> </mrow> </msup> <mi>F</mi> </mrow> </semantics></math> with NSMC.</p>
Full article ">Figure 38
<p>The tracking of <math display="inline"><semantics> <msub> <mi>i</mi> <mrow> <mi>r</mi> <mi>e</mi> <mi>f</mi> <mi>e</mi> <mi>r</mi> <mi>e</mi> <mi>n</mi> <mi>c</mi> <mi>e</mi> </mrow> </msub> </semantics></math> with inductor <math display="inline"><semantics> <mrow> <mi>L</mi> <mo>=</mo> <mn>13</mn> <mo>×</mo> <msup> <mn>10</mn> <mrow> <mo>−</mo> <mn>1</mn> </mrow> </msup> <mi>H</mi> </mrow> </semantics></math> and <math display="inline"><semantics> <mrow> <msub> <mi>C</mi> <mn>1</mn> </msub> <mo>=</mo> <mn>4</mn> <mo>×</mo> <msup> <mn>10</mn> <mrow> <mo>−</mo> <mn>3</mn> </mrow> </msup> <mi>F</mi> </mrow> </semantics></math> with NSMC.</p>
Full article ">Figure 39
<p>The tracking of <math display="inline"><semantics> <msub> <mi>V</mi> <mrow> <mi>c</mi> <mi>r</mi> </mrow> </msub> </semantics></math> with inductor <math display="inline"><semantics> <mrow> <mi>L</mi> <mo>=</mo> <mn>13</mn> <mo>×</mo> <msup> <mn>10</mn> <mrow> <mo>−</mo> <mn>2</mn> </mrow> </msup> <mi>H</mi> </mrow> </semantics></math> and <math display="inline"><semantics> <mrow> <msub> <mi>C</mi> <mn>1</mn> </msub> <mo>=</mo> <mn>4</mn> <mo>×</mo> <msup> <mn>10</mn> <mrow> <mo>−</mo> <mn>7</mn> </mrow> </msup> <mi>F</mi> </mrow> </semantics></math> with NSMC.</p>
Full article ">Figure 40
<p>The tracking of <math display="inline"><semantics> <msub> <mi>i</mi> <mrow> <mi>r</mi> <mi>e</mi> <mi>f</mi> <mi>e</mi> <mi>r</mi> <mi>e</mi> <mi>n</mi> <mi>c</mi> <mi>e</mi> </mrow> </msub> </semantics></math> with inductor <math display="inline"><semantics> <mrow> <mi>L</mi> <mo>=</mo> <mn>13</mn> <mo>×</mo> <msup> <mn>10</mn> <mrow> <mo>−</mo> <mn>2</mn> </mrow> </msup> <mi>H</mi> </mrow> </semantics></math> and <math display="inline"><semantics> <mrow> <msub> <mi>C</mi> <mn>1</mn> </msub> <mo>=</mo> <mn>4</mn> <mo>×</mo> <msup> <mn>10</mn> <mrow> <mo>−</mo> <mn>7</mn> </mrow> </msup> <mi>F</mi> </mrow> </semantics></math> with NSMC.</p>
Full article ">Figure 41
<p>The tracking of <math display="inline"><semantics> <msub> <mi>V</mi> <mrow> <mi>c</mi> <mi>r</mi> </mrow> </msub> </semantics></math> with all changes in inductor <span class="html-italic">L</span> and capacitor <math display="inline"><semantics> <msub> <mi>C</mi> <mn>1</mn> </msub> </semantics></math> using NSMC.</p>
Full article ">Figure 42
<p>The tracking of <math display="inline"><semantics> <msub> <mi>i</mi> <mrow> <mi>r</mi> <mi>e</mi> <mi>f</mi> <mi>e</mi> <mi>r</mi> <mi>e</mi> <mi>n</mi> <mi>c</mi> <mi>e</mi> </mrow> </msub> </semantics></math> with all changes in inductor <span class="html-italic">L</span> and capacitor <math display="inline"><semantics> <msub> <mi>C</mi> <mn>1</mn> </msub> </semantics></math> using NSMC.</p>
Full article ">Figure 43
<p>The effect of the parameter changes in the system of the control of voltage <math display="inline"><semantics> <msub> <mi>V</mi> <mrow> <mi>c</mi> <mi>r</mi> </mrow> </msub> </semantics></math> using NIOC. (<b>a</b>) With <math display="inline"><semantics> <mrow> <mi>L</mi> <mo>=</mo> <mn>13</mn> <mo>×</mo> <msup> <mn>10</mn> <mrow> <mo>−</mo> <mn>1</mn> </mrow> </msup> </mrow> </semantics></math>, (<b>b</b>) With <math display="inline"><semantics> <mrow> <mi>L</mi> <mo>=</mo> <mn>13</mn> <mo>×</mo> <msup> <mn>10</mn> <mrow> <mo>−</mo> <mn>2</mn> </mrow> </msup> <mi>H</mi> </mrow> </semantics></math>, (<b>c</b>) With <math display="inline"><semantics> <mrow> <mi>L</mi> <mo>=</mo> <mn>65</mn> <mo>×</mo> <msup> <mn>10</mn> <mrow> <mo>−</mo> <mn>1</mn> </mrow> </msup> <mi>H</mi> </mrow> </semantics></math>, (<b>d</b>) With <math display="inline"><semantics> <mrow> <mi>L</mi> <mo>=</mo> <mn>13</mn> <mo>×</mo> <msup> <mn>10</mn> <mrow> <mo>−</mo> <mn>1</mn> </mrow> </msup> <mi>H</mi> </mrow> </semantics></math> and <math display="inline"><semantics> <mrow> <msub> <mi>C</mi> <mn>1</mn> </msub> <mo>=</mo> <mn>4</mn> <mo>×</mo> <msup> <mn>10</mn> <mrow> <mo>−</mo> <mn>3</mn> </mrow> </msup> <mi>F</mi> </mrow> </semantics></math>, (<b>e</b>) With <math display="inline"><semantics> <mrow> <mi>L</mi> <mo>=</mo> <mn>13</mn> <mo>×</mo> <msup> <mn>10</mn> <mrow> <mo>−</mo> <mn>2</mn> </mrow> </msup> <mi>H</mi> </mrow> </semantics></math> and <math display="inline"><semantics> <mrow> <msub> <mi>C</mi> <mn>1</mn> </msub> <mo>=</mo> <mn>4</mn> <mo>×</mo> <msup> <mn>10</mn> <mrow> <mo>−</mo> <mn>7</mn> </mrow> </msup> <mi>F</mi> </mrow> </semantics></math>.</p>
Full article ">Figure 44
<p>The effect of the parameter changes in the system of the control of current <math display="inline"><semantics> <msub> <mi>i</mi> <mrow> <mi>r</mi> <mi>e</mi> <mi>f</mi> <mi>e</mi> <mi>r</mi> <mi>e</mi> <mi>n</mi> <mi>c</mi> <mi>e</mi> </mrow> </msub> </semantics></math> using NIOC. (<b>a</b>) With <math display="inline"><semantics> <mrow> <mi>L</mi> <mo>=</mo> <mn>13</mn> <mo>×</mo> <msup> <mn>10</mn> <mrow> <mo>−</mo> <mn>1</mn> </mrow> </msup> </mrow> </semantics></math>, (<b>b</b>) With <math display="inline"><semantics> <mrow> <mi>L</mi> <mo>=</mo> <mn>13</mn> <mo>×</mo> <msup> <mn>10</mn> <mrow> <mo>−</mo> <mn>2</mn> </mrow> </msup> <mi>H</mi> </mrow> </semantics></math>, (<b>c</b>) With <math display="inline"><semantics> <mrow> <mi>L</mi> <mo>=</mo> <mn>65</mn> <mo>×</mo> <msup> <mn>10</mn> <mrow> <mo>−</mo> <mn>1</mn> </mrow> </msup> <mi>H</mi> </mrow> </semantics></math>, (<b>d</b>) With <math display="inline"><semantics> <mrow> <mi>L</mi> <mo>=</mo> <mn>13</mn> <mo>×</mo> <msup> <mn>10</mn> <mrow> <mo>−</mo> <mn>1</mn> </mrow> </msup> <mi>H</mi> </mrow> </semantics></math> and <math display="inline"><semantics> <mrow> <msub> <mi>C</mi> <mn>1</mn> </msub> <mo>=</mo> <mn>4</mn> <mo>×</mo> <msup> <mn>10</mn> <mrow> <mo>−</mo> <mn>3</mn> </mrow> </msup> <mi>F</mi> </mrow> </semantics></math>, (<b>e</b>) With <math display="inline"><semantics> <mrow> <mi>L</mi> <mo>=</mo> <mn>13</mn> <mo>×</mo> <msup> <mn>10</mn> <mrow> <mo>−</mo> <mn>2</mn> </mrow> </msup> <mi>H</mi> </mrow> </semantics></math> and <math display="inline"><semantics> <mrow> <msub> <mi>C</mi> <mn>1</mn> </msub> <mo>=</mo> <mn>4</mn> <mo>×</mo> <msup> <mn>10</mn> <mrow> <mo>−</mo> <mn>7</mn> </mrow> </msup> <mi>F</mi> </mrow> </semantics></math>.</p>
Full article ">Figure 45
<p>The effect of the parameter changes in the system of the control of voltage <math display="inline"><semantics> <msub> <mi>V</mi> <mrow> <mi>c</mi> <mi>r</mi> </mrow> </msub> </semantics></math> using NSMC. (<b>a</b>) With <math display="inline"><semantics> <mrow> <mi>L</mi> <mo>=</mo> <mn>13</mn> <mo>×</mo> <msup> <mn>10</mn> <mrow> <mo>−</mo> <mn>1</mn> </mrow> </msup> </mrow> </semantics></math>, (<b>b</b>) With <math display="inline"><semantics> <mrow> <mi>L</mi> <mo>=</mo> <mn>13</mn> <mo>×</mo> <msup> <mn>10</mn> <mrow> <mo>−</mo> <mn>2</mn> </mrow> </msup> <mi>H</mi> </mrow> </semantics></math>, (<b>c</b>) With <math display="inline"><semantics> <mrow> <mi>L</mi> <mo>=</mo> <mn>65</mn> <mo>×</mo> <msup> <mn>10</mn> <mrow> <mo>−</mo> <mn>1</mn> </mrow> </msup> <mi>H</mi> </mrow> </semantics></math>, (<b>d</b>) With <math display="inline"><semantics> <mrow> <mi>L</mi> <mo>=</mo> <mn>13</mn> <mo>×</mo> <msup> <mn>10</mn> <mrow> <mo>−</mo> <mn>1</mn> </mrow> </msup> <mi>H</mi> </mrow> </semantics></math> and <math display="inline"><semantics> <mrow> <msub> <mi>C</mi> <mn>1</mn> </msub> <mo>=</mo> <mn>4</mn> <mo>×</mo> <msup> <mn>10</mn> <mrow> <mo>−</mo> <mn>3</mn> </mrow> </msup> <mi>F</mi> </mrow> </semantics></math>, (<b>e</b>) With <math display="inline"><semantics> <mrow> <mi>L</mi> <mo>=</mo> <mn>13</mn> <mo>×</mo> <msup> <mn>10</mn> <mrow> <mo>−</mo> <mn>2</mn> </mrow> </msup> <mi>H</mi> </mrow> </semantics></math> and <math display="inline"><semantics> <mrow> <msub> <mi>C</mi> <mn>1</mn> </msub> <mo>=</mo> <mn>4</mn> <mo>×</mo> <msup> <mn>10</mn> <mrow> <mo>−</mo> <mn>7</mn> </mrow> </msup> <mi>F</mi> </mrow> </semantics></math>.</p>
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<p>The effect of the parameter changes in the system of the control of current <math display="inline"><semantics> <msub> <mi>i</mi> <mrow> <mi>r</mi> <mi>e</mi> <mi>f</mi> <mi>e</mi> <mi>r</mi> <mi>e</mi> <mi>n</mi> <mi>c</mi> <mi>e</mi> </mrow> </msub> </semantics></math> using NSMC. (<b>a</b>) With <math display="inline"><semantics> <mrow> <mi>L</mi> <mo>=</mo> <mn>13</mn> <mo>×</mo> <msup> <mn>10</mn> <mrow> <mo>−</mo> <mn>1</mn> </mrow> </msup> </mrow> </semantics></math>, (<b>b</b>) With <math display="inline"><semantics> <mrow> <mi>L</mi> <mo>=</mo> <mn>13</mn> <mo>×</mo> <msup> <mn>10</mn> <mrow> <mo>−</mo> <mn>2</mn> </mrow> </msup> <mi>H</mi> </mrow> </semantics></math>, (<b>c</b>) With <math display="inline"><semantics> <mrow> <mi>L</mi> <mo>=</mo> <mn>65</mn> <mo>×</mo> <msup> <mn>10</mn> <mrow> <mo>−</mo> <mn>1</mn> </mrow> </msup> <mi>H</mi> </mrow> </semantics></math>, (<b>d</b>) With <math display="inline"><semantics> <mrow> <mi>L</mi> <mo>=</mo> <mn>13</mn> <mo>×</mo> <msup> <mn>10</mn> <mrow> <mo>−</mo> <mn>1</mn> </mrow> </msup> <mi>H</mi> </mrow> </semantics></math> and <math display="inline"><semantics> <mrow> <msub> <mi>C</mi> <mn>1</mn> </msub> <mo>=</mo> <mn>4</mn> <mo>×</mo> <msup> <mn>10</mn> <mrow> <mo>−</mo> <mn>3</mn> </mrow> </msup> <mi>F</mi> </mrow> </semantics></math>, (<b>e</b>) With <math display="inline"><semantics> <mrow> <mi>L</mi> <mo>=</mo> <mn>13</mn> <mo>×</mo> <msup> <mn>10</mn> <mrow> <mo>−</mo> <mn>2</mn> </mrow> </msup> <mi>H</mi> </mrow> </semantics></math> and <math display="inline"><semantics> <mrow> <msub> <mi>C</mi> <mn>1</mn> </msub> <mo>=</mo> <mn>4</mn> <mo>×</mo> <msup> <mn>10</mn> <mrow> <mo>−</mo> <mn>7</mn> </mrow> </msup> <mi>F</mi> </mrow> </semantics></math>.</p>
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17 pages, 3994 KiB  
Article
A Novel Day-Ahead Optimization-Oriented Low-Carbon Economic Scheduling Scheme for Integrated Energy Systems
by Youdong Liang, Peng Li, Zhiran Yu, Zhilong Yin, Feng Yu and Zhiguo Wang
Electronics 2024, 13(20), 4122; https://doi.org/10.3390/electronics13204122 - 19 Oct 2024
Viewed by 506
Abstract
As the global energy structure undergoes transformation and the low-carbon development process continues to advance, integrated energy systems have progressively emerged as crucial technical support for achieving sustainable development. In this paper, a joint-day optimal scheduling model is put forward considering the existence [...] Read more.
As the global energy structure undergoes transformation and the low-carbon development process continues to advance, integrated energy systems have progressively emerged as crucial technical support for achieving sustainable development. In this paper, a joint-day optimal scheduling model is put forward considering the existence of dispatchable resources in community integrated energy systems (CIES). The aim is to cut down the system operation cost and enhance energy utilization efficiency. This model is founded on the concept of energy hubs and combines the shiftable, transferable, and reducible characteristics of demand-side flexible loads. It includes gas turbine power generation systems, energy storage, as well as wind and solar renewable resources. System operation cost and carbon trading cost are comprehensively taken into account, and ultimately, the CIES low-carbon economic dispatch model with the lowest total cost as the optimization objective is established. The Yalmip toolbox and Cplex solver are employed to solve the model. The optimization results of flexible electric and thermal loads participating in dispatching under different scenarios are analyzed through simulation. The economic benefits of electric and thermal independent dispatching are compared and analyzed, and the economic benefits of electric and thermal coupled dispatching are verified. The study reveals that the rational scheduling of user-side flexible loads can notably reduce operating costs, lower the load peak-to-valley difference and carbon emissions, and boost the comprehensive economic and environmental benefits of the system. Full article
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<p>CIES architecture.</p>
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<p>Electricity and heat forecast loads and wind turbine and photovoltaic forecast outputs.</p>
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<p>(<b>a</b>) Optimization of pre-electric load distribution; (<b>b</b>) heat load distribution before optimization.</p>
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<p>(<b>a</b>) Optimized electrical load; (<b>b</b>) optimized heat load.</p>
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<p>(<b>a</b>) Cogeneration electricity output situation; (<b>b</b>) cogeneration heat output situation.</p>
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<p>(<b>a</b>) Comparison before and after electrical load optimization; (<b>b</b>) comparison before and after heat load optimization.</p>
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<p>(<b>a</b>) Three scenarios of electrical load changes; (<b>b</b>) heat load changes in three scenarios.</p>
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<p>(<b>a</b>) Relationships between the difference in electric load before and after demand response and the market price of electricity. (<b>b</b>) Relationships between the difference in heat load before and after demand response and the market price of electricity.</p>
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<p>Relationship between total carbon trading and market electricity prices.</p>
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<p>(<b>a</b>) Electricity output from cogeneration.(<b>b</b>) Heat and power sub-production heat output.</p>
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32 pages, 10079 KiB  
Article
Deciphering the Landscape of GATA-Mediated Transcriptional Regulation in Gastric Cancer
by Rodiola Begolli, Anastasia Patouna, Periklis Vardakas, Anastasia Xagara, Kleanthi Apostolou, Demetrios Kouretas and Antonis Giakountis
Antioxidants 2024, 13(10), 1267; https://doi.org/10.3390/antiox13101267 - 18 Oct 2024
Viewed by 1050
Abstract
Gastric cancer (GC) is an asymptomatic malignancy in early stages, with an invasive and cost-ineffective diagnostic toolbox that contributes to severe global mortality rates on an annual basis. Ectopic expression of the lineage survival transcription factors (LS-TFs) GATA4 and 6 promotes stomach oncogenesis. [...] Read more.
Gastric cancer (GC) is an asymptomatic malignancy in early stages, with an invasive and cost-ineffective diagnostic toolbox that contributes to severe global mortality rates on an annual basis. Ectopic expression of the lineage survival transcription factors (LS-TFs) GATA4 and 6 promotes stomach oncogenesis. However, LS-TFs also govern important physiological roles, hindering their direct therapeutic targeting. Therefore, their downstream target genes are particularly interesting for developing cancer-specific molecular biomarkers or therapeutic agents. In this work, we couple inducible knockdown systems with chromatin immunoprecipitation and RNA-seq to thoroughly detect and characterize direct targets of GATA-mediated transcriptional regulation in gastric cancer cells. Our experimental and computational strategy provides evidence that both factors regulate the expression of several coding and non-coding RNAs that in turn mediate for their cancer-promoting phenotypes, including but not limited to cell cycle, apoptosis, ferroptosis, and oxidative stress response. Finally, the diagnostic and prognostic potential of four metagene signatures consisting of selected GATA4/6 target transcripts is evaluated in a multi-cancer panel of ~7000 biopsies from nineteen tumor types, revealing elevated specificity for gastrointestinal tumors. In conclusion, our integrated strategy uncovers the landscape of GATA-mediated coding and non-coding transcriptional regulation, providing insights regarding their molecular and clinical function in gastric cancer. Full article
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<p>Analysis of GATA4 and 6 expression in cancer patients. (<b>A</b>) Normalized expression of GATA4 (upper plot) and GATA6 (lower plot) in RNA-seq data from a multi-cancer panel of TCGA tumors. Dots correspond to average expression and grey density plots to its distribution for each cancer type. Cancer types are aligned from left to right according to decreasing levels of GATA4 expression for both plots. (<b>B</b>) Violin plots comparing the expression of GATA4 (upper plot) and GATA6 (lower plot) in staged gastroesophageal tumors from TCGA compared to normal biopsies. (<b>C</b>) Representative immunostaining images of GATA4 and GATA6 protein levels in gastric tumors (1 mm) from the Human Protein Atlas. The number of tissue sections with high or medium expression is shown above each image compared to the total. None of the available sections had low or non-detected levels of GATA4, while only 2 out of 11 sections had low/not-detected levels of GATA6. (<b>D</b>) Kaplan–Meier analysis for comparing lymph node invasion between patients with high (red curve) and low (green curve) levels of GATA4 (left plot, log2rank = 0.021) or GATA6 (right plot, log2rank = 0.007). (<b>E</b>) Bar plot demonstrating the expression of GATA4 (upper plot) or GATA6 (lower plot) from RNA-seq experiments in all available gastric cancer cell lines from the Cancer Cell Line Encyclopedia. Expression of both factors in AGS gastric cancer cells is marked with orange or blue, and cell lines are ranked from left to right according to decreasing levels of GATA expression.</p>
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<p>ChIP-seq analysis of GATA4 and 6 along with histone modifications in AGS cells. (<b>A</b>) Global heatmap analysis of ChIP-seq peak distribution around the TSS. (<b>B</b>) TSS distribution plot summarizing the percentage of peaks across all genomic annotations. (<b>C</b>) GATA4 and 6 peak distribution across genic annotations (left panel) and relative peak enrichment analysis over background for all genomic annotations. (<b>D</b>) Sea motif enrichment analysis for GATA4 and 6 peaks divided for all peaks (left), protein-coding promoters (middle), and non-coding promoters. Color indicates statistical significance; dot size indicates enrichment score. (<b>E</b>) Dot plot summarizing the disease enrichment results from the annotated ChIP-seq peaks. First panel on the left corresponds to results from all GATA peaks, the second panel corresponds to promoter peaks only, the third panel to the promoter peaks of all GATA upregulated genes, and the fourth panel to the promoter peaks of all GATA downregulated genes. Color indicates statistical significance; dot size indicates gene ratio for each category.</p>
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<p>Transcriptome analysis following inducible GATA RNAi in AGS cells. (<b>A</b>) Heatmap summarizing the normalized expression (z-score) of the commonly affected differentially expressed genes (DEGs) across all samples. (<b>B</b>) Deregulogram depicting the correlation of expression in GATA4 KD (x-axis) vs GATA6 KD (y-axis). Colors represent the level of statistical significance across both datasets. (<b>C</b>) Venn diagrams summarizing the number of commonly affected DEGs between both datasets across coding and non-coding biotypes. (<b>D</b>) Deregulogram highlighting the association between GATA presence at gene loci with the deregulation of the corresponding transcripts. Bottom plot ranks all genes according to their GATA regulatory score, upper plot highlights the smoothed pattern of deregulation (fold change) of the same sorted genes for GATA4 (shown with blue) and GATA6 KD (shown with yellow). (<b>E</b>) GSEA analysis summarizing the enrichment of genes involved in cell cycle regulation (left) and upper gastrointestinal cancer (right). Heatmaps at the bottom highlight the expression of each enriched gene (indicated via entrez ID at the bottom) across all RNA-set data from both datasets, shown at the right of each heatmap. (<b>F</b>) UCSC browser snap-shot highlighting the E2F8 locus as an example of a GATA-deregulated target. Green tracks summarize GATA ChIP-seq peak, blue/orange tracks summarize control and KD RNA-seq expression for GATA4, while pink/purple tracks summarize control and KD RNA-seq expression for GATA6.</p>
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<p>Phenotypic analysis of GATA KD in gastric cancer cells. (<b>A</b>) Colony formation assay following inducible knockdown of GATA4 and 6 in AGS cells. An inducible scrambled shRNA is also shown as a control. (<b>B</b>) Wound healing assay across a two-day time course of GATA4 and 6 knockdown in AGS cells vs the scrambled control. Magnification is 10x. (<b>C</b>) Cell cycle profiling of GATA4 and 6 downregulation in AGS cells align with the scrambled control. Black bars represent G1/G0, grey bars represent S phase, and green bars represent G2/M phase. (<b>D</b>) Analysis of anti-oxidation effects associated with scrambled shRNA expression or shRNA-mediated impairment of GATA4 and 6 function in AGS cells. * <span class="html-italic">p</span>-value ≤ 0.05, ** <span class="html-italic">p</span>-value ≤ 0.01, *** <span class="html-italic">p</span>-value ≤ 0.001, n.s: not significant, n.d: not detectable.</p>
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<p>GATA meta-signature clinomic footprint in cancer biopsies. (<b>A</b>) Heatmap summarizing the normalized expression (z-score) of the commonly affected differentially expressed genes (DEGs) across all TCGA STAD samples. Violin plots at the bottom summarize the expression of the up- and downregulated DEGs across all tumor stages. Statistical significance refers to normal vs rest and was calculated with the Kruskal–Wallis test. (<b>B</b>) Beeswarm plot summarizing the distribution of ROC AUC across all gastric tumor stages for all 104 DEGs from (<b>A</b>), divided according to their expression (up- or downregulated). (<b>C</b>) ROC curve analysis highlighting the diagnostic power of the four selected meta-signatures. Average AUC performance is indicated along with 95% confidence intervals and sensitivity/specificity values. (<b>D</b>) Boxplots comparing the expression of the four selected meta-signatures in normal (grey) vs tumor (red) biopsies across various gastrointestinal tumors. * <span class="html-italic">p</span>-value ≤ 0.05.</p>
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