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Search Results (128)

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18 pages, 2120 KiB  
Article
Optimization of Ultrasonication Probe-Assisted Extraction Parameters for Bioactive Compounds from Opuntia macrorhiza Using Taguchi Design and Assessment of Antioxidant Properties
by Dimitrios Kalompatsios, Vassilis Athanasiadis, Martha Mantiniotou and Stavros I. Lalas
Appl. Sci. 2024, 14(22), 10460; https://doi.org/10.3390/app142210460 - 13 Nov 2024
Viewed by 293
Abstract
Opuntia macrorhiza, commonly referred to as red prickly pear, is a type of cactus fruit. The Opuntia macrorhiza (OM) fruit is rich in polyphenols and contains a high amount of ascorbic acid and betalains. The fruit peels have demonstrated many biological abilities, [...] Read more.
Opuntia macrorhiza, commonly referred to as red prickly pear, is a type of cactus fruit. The Opuntia macrorhiza (OM) fruit is rich in polyphenols and contains a high amount of ascorbic acid and betalains. The fruit peels have demonstrated many biological abilities, including antioxidant, antifungal, and antibacterial activities. Ultrasound probe-assisted extraction (UPAE) is a highly promising method for efficiently extracting valuable molecules from natural sources. The objective of this study is to optimize the parameters of UPAE, including the appropriate solvent, liquid-to-solid ratio, extraction duration, and pulsation level. The aim is to maximize the yield of bioactive compounds (polyphenols, betalains, and ascorbic acid) from OM fruits (pulps and peels) and assess their antioxidant activities using Taguchi design. The optimal extraction conditions through the partial least squares method for OM pulp were determined to be aqueous extraction for 12 min with a liquid-to-solid ratio of 60 mL/g and 48 pulses/min, while for OM peels they were determined to be aqueous extraction for 20 min with a liquid-to-solid ratio of 60 mL/g and a pulsation of 48 pulses/min. The optimum UPAE conditions were compared with the values obtained from the optimum extraction under stirring extraction (STE). Overall, UPAE exhibited higher yields than STE. The obtained total polyphenol content ranged from 10.27 to 13.07 mg gallic acid equivalents/g dry weight, while the betalain content ranged from 974 to 1099 μg/g dry weight. Overall, these fruits demonstrated potential as new components for food and medicinal uses due to their good health effects and lack of toxicity. Full article
(This article belongs to the Special Issue Application of Natural Components in Food Production)
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<p>Absorption spectra scanning of the pulp (<b>A</b>) and peel (<b>B</b>) of <span class="html-italic">Opuntia macrorhiza</span>, as well as betalain composition analyses of the pulp (<b>C</b>) and peel (<b>D</b>). Design points (DP) 1–9 are illustrated in the figure.</p>
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<p>Multiple factor analysis (MFA) for the measured variables. Each <span class="html-italic">X</span> variable is presented with a blue color.</p>
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<p>Multivariate correlation analysis of measured variables.</p>
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<p>Plots (<b>A</b>,<b>B</b>) illustrate the optimization of the pulp and peel from <span class="html-italic">Opuntia macrorhiza</span> extracts, respectively, utilizing a partial least squares (PLS) prediction profiler and a desirability function with extrapolation control. Plots (<b>C</b>,<b>D</b>) display the Variable Importance Plot (VIP) graph, indicating the VIP values for each predictor variable in the pulp and peel extracts, respectively. A red dashed line is drawn at the 0.8 significance level for each variable in plots (<b>C</b>,<b>D</b>).</p>
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<p>Canonical plots in discriminant analysis were used for various analyses of both the pulp and peel of <span class="html-italic">Opuntia macrorhiza</span> extracts, utilizing two distinct extraction techniques: ultrasound probe-assisted extraction (UPAE) and stirring extraction (STE). The distance between the black dots, representing group centroids and reflects the distinctness of each group, whereas the distribution of crosses around each circle illustrates the variability within the groups.</p>
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19 pages, 2430 KiB  
Systematic Review
Low PAPPA and Its Association with Adverse Pregnancy Outcomes in Twin Pregnancies: A Systematic Review of the Literature and Meta-Analysis
by Ioakeim Sapantzoglou, Maria Giourga, Afroditi Maria Kontopoulou, Vasileios Pergialiotis, Maria Anastasia Daskalaki, Panagiotis Antsaklis, Marianna Theodora, Nikolaos Thomakos and George Daskalakis
J. Clin. Med. 2024, 13(22), 6637; https://doi.org/10.3390/jcm13226637 - 5 Nov 2024
Viewed by 385
Abstract
Background: It is well established in the literature that pregnancy-associated plasma protein-A (PAPP-A) is linked to several adverse pregnancy outcomes, including pre-eclampsia (PE), fetal growth restriction (FGR), and preterm birth (PTB) in singleton pregnancies. However, data regarding such an association in twin [...] Read more.
Background: It is well established in the literature that pregnancy-associated plasma protein-A (PAPP-A) is linked to several adverse pregnancy outcomes, including pre-eclampsia (PE), fetal growth restriction (FGR), and preterm birth (PTB) in singleton pregnancies. However, data regarding such an association in twin pregnancies are lacking. The primary goal of this systematic review and meta-analysis was to assess the potential value of low PAPP-A levels in the prediction of the subsequent development of hypertensive disorders of pregnancy (HDPs), PTB, and small for gestational age (SGA)/FGR fetuses in twin pregnancies and investigate its association with the development of gestational diabetes, intrauterine death (IUD) of at least one twin, and birth weight discordance (BWD) among the fetuses. Methods: Medline, Scopus, CENTRAL, Clinicaltrials.gov, and Google Scholar databases were systematically searched from inception until 31 July 2024. All observational studies reporting low PAPP-A levels after the performance of the first-trimester combined test as part of the screening for chromosomal abnormalities with reported adverse pregnancy outcomes were included. Results: The current systematic review encompassed a total of 11 studies (among which 6 were included in the current meta-analysis) that enrolled a total of 3741 patients. Low PAPP-A levels were not associated with HDPs (OR 1.25, 95% CI 0.78, 2.02, I-square test: 13%). Low PAPP-A levels were positively associated with both the development of preterm birth prior to 32 (OR 2.85, 95% CI 1.70, 4.77, I-square test: 0%) and 34 weeks of gestational age (OR 2.09, 95% CI 1.34, 3.28, I-square test: 0%). Furthermore, low PAPP-A levels were positively associated with SGA/FGR (OR 1.58, 95% CI 1.04, 2.41, I-square test: 0%). Prediction intervals indicated that the sample size that was used did not suffice to support these findings in future studies. Conclusions: Our study indicated that low PAPP-A levels are correlated with an increased incidence of adverse perinatal outcomes in twin pregnancies. Identifying women at elevated risk for such adversities in twin pregnancies may facilitate appropriate management and potential interventions, but additional studies are required to identify the underlying mechanism linking PAPP-A with those obstetrical complications. Full article
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<p>Search strategy [<a href="#B10-jcm-13-06637" class="html-bibr">10</a>].</p>
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<p>Newcastle–Ottawa scale (NOS) quality assessment of the included studies [<a href="#B7-jcm-13-06637" class="html-bibr">7</a>,<a href="#B8-jcm-13-06637" class="html-bibr">8</a>,<a href="#B9-jcm-13-06637" class="html-bibr">9</a>,<a href="#B10-jcm-13-06637" class="html-bibr">10</a>,<a href="#B11-jcm-13-06637" class="html-bibr">11</a>,<a href="#B12-jcm-13-06637" class="html-bibr">12</a>,<a href="#B13-jcm-13-06637" class="html-bibr">13</a>,<a href="#B14-jcm-13-06637" class="html-bibr">14</a>,<a href="#B15-jcm-13-06637" class="html-bibr">15</a>,<a href="#B16-jcm-13-06637" class="html-bibr">16</a>,<a href="#B17-jcm-13-06637" class="html-bibr">17</a>]. √: the selected quality item was evaluated and found present in the study (selection and outcome categories), √: the study groups were controlled for one important factor (gestational age) (comparability category), √√: the study groups were controlled for two important factors (gestational age and maternal weight) (comparability category).</p>
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<p>Forest plots of odds ratios of the subsequent development of hypertensive disorders of pregnancy in twin pregnancies with low PAPP-A levels with 95% confidence intervals (CIs) and weighted pooled summary statistics using a bivariate random-effect model [<a href="#B8-jcm-13-06637" class="html-bibr">8</a>,<a href="#B12-jcm-13-06637" class="html-bibr">12</a>,<a href="#B13-jcm-13-06637" class="html-bibr">13</a>,<a href="#B16-jcm-13-06637" class="html-bibr">16</a>]. Forest plot analysis: Vertical line = “no difference” point between the two groups. Red squares = Odds ratios of individual studies; Diamond = pooled odds ratios and 95% CI for all studies; Horizontal black lines = 95% CI; Horizontal red line = prediction intervals. Abbreviations: SE: standard error, CI: confidence interval.</p>
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<p>Forest plots of odds ratios of the subsequent development of preterm birth prior to 32 weeks of gestational age in twin pregnancies with low PAPP-A levels with 95% confidence intervals (CIs) and weighted pooled summary statistics using a bivariate random-effect model [<a href="#B8-jcm-13-06637" class="html-bibr">8</a>,<a href="#B11-jcm-13-06637" class="html-bibr">11</a>,<a href="#B19-jcm-13-06637" class="html-bibr">19</a>]. Forest plot analysis: Vertical line = “no difference” point between the two groups. Red squares = Odds ratios of individual studies; Diamond = pooled odds ratios and 95% CI for all studies; Horizontal black lines = 95% CI; Horizontal red line = prediction intervals. Abbreviations: SE: standard error, CI: confidence interval.</p>
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<p>Forest plots of odds ratios of the subsequent development of preterm birth prior to 34 weeks of gestational age in twin pregnancies with low PAPP-A levels with 95% confidence intervals (CIs) and weighted pooled summary statistics using a bivariate random-effect model [<a href="#B8-jcm-13-06637" class="html-bibr">8</a>,<a href="#B12-jcm-13-06637" class="html-bibr">12</a>,<a href="#B13-jcm-13-06637" class="html-bibr">13</a>,<a href="#B19-jcm-13-06637" class="html-bibr">19</a>]. Forest plot analysis: Vertical line = “no difference” point between the two groups. Red squares = Odds ratios of individual studies; Diamond = pooled odds ratios and 95% CI for all studies; Horizontal black lines = 95% CI; Horizontal red line = prediction intervals. Abbreviations: SE: standard error, CI: confidence interval.</p>
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<p>Forest plots of odds ratios of the subsequent development of SGA/FGR in twin pregnancies with low PAPP-A levels with 95% confidence intervals (CIs) and weighted pooled summary statistics using a bivariate random-effect model [<a href="#B8-jcm-13-06637" class="html-bibr">8</a>,<a href="#B12-jcm-13-06637" class="html-bibr">12</a>,<a href="#B13-jcm-13-06637" class="html-bibr">13</a>,<a href="#B19-jcm-13-06637" class="html-bibr">19</a>]. Forest plot analysis: Vertical line = “no difference” point between the two groups. Red squares = Odds ratios of individual studies; Diamond = pooled odds ratios and 95% CI for all studies; Horizontal black lines = 95% CI; Horizontal red line = prediction intervals. Abbreviations: SE: standard error, CI: confidence interval.</p>
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12 pages, 6955 KiB  
Article
Dynamic Analysis of UPLC-MS/MS for Sugar and Organic Acid Components of Pears with Different Flesh Texture Types During Development
by Chen Yin, Luming Tian, Jing Li, Yufen Cao, Xingguang Dong, Ying Zhang and Dan Qi
Agronomy 2024, 14(11), 2494; https://doi.org/10.3390/agronomy14112494 - 24 Oct 2024
Viewed by 508
Abstract
Pears are popular among consumers for their juicy and delicious taste. In this study, the sugar and organic acid compositions of pear fruits with different texture types during development were determined by ultra-performance liquid chromatography tandem mass spectrometry (UPLC-MS/MS), and fruit texture traits [...] Read more.
Pears are popular among consumers for their juicy and delicious taste. In this study, the sugar and organic acid compositions of pear fruits with different texture types during development were determined by ultra-performance liquid chromatography tandem mass spectrometry (UPLC-MS/MS), and fruit texture traits were determined by a texture analyzer. The results showed that the dominant sugar in soft and crispy types of pear fruits was fructose. The main difference between pears was the second-highest sugar component; glucose content was higher in crispy-flesh pear fruits while sucrose content was higher in soft-flesh pear fruits. The composition of organic acid components in both texture types of pear fruits was similar. The turning points of changes in the content of sucrose, sorbitol, glucose and quinic acid were different between different-textured pear varieties. A Pearson correlation analysis showed that sugar and organic acid components were significantly correlated with single fruit weight and soluble solid contents (SSCs), respectively. There was a high correlation among texture traits, individual sugars and organic acids. A partial least squares discriminant analysis (PLS-DA) VIP score plot showed that the differential traits with scores greater than 1 were total soluble sugars/total organic acids (TSSs/TAs), fracture and malic acid/citric acid (MA/CA), which could distinguish pear fruits of different texture types better and reflect the uneven quality differences among pear fruits adapted to different origins. The comprehensive analysis results of the flesh texture parameters and sugar and organic acid components are in line with objective reality and will provide a reference for quantitative indicators of the sensory evaluation of pear varieties as well as for molecular mechanism research on trait differences. Full article
(This article belongs to the Section Horticultural and Floricultural Crops)
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<p>Changes in individual sugar and organic acid contents during development stages of different types of pear varieties: (<b>a</b>) sucrose; (<b>b</b>) sorbitol; (<b>c</b>) fructose; (<b>d</b>) glucose; (<b>e</b>) quinic acid; (<b>f</b>) shikimic acid; (<b>g</b>) malic acid; (<b>h</b>) citric acid.</p>
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<p>(<b>a</b>) Pearson correlation heatmap among single fruit weight, SSCs, texture traits, and individual sugars and organic acids: * shows the correlation reach a significant level (<span class="html-italic">p</span> &lt; 0.05); colors in the diagram represent the negative or positive correlation, ranging from blue to red, respectively. (<b>b</b>) Principal component analysis (PCA) of individual sugars and organic acids.</p>
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<p>(<b>a</b>) PCA of individual sugars and texture traits; (<b>b</b>) PCA of individual organic acids and texture traits.</p>
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<p>(<b>a</b>) Partial least squares discriminant analysis (PLS-DA) of individual sugars and organic acids and texture traits of 8 pear varieties; the data are divided into 8 groups according to different development stages: A—55 DAFB, B—69 DAFB, C—83 DAFB, D—97 DAFB, E—111 DAFB, F—125 DAFB, G—139 DAFB, H—153 DAFB. (<b>b</b>) PLS-DA VIP of individual sugars and organic acids and texture traits of 8 pear varieties; the dots represent the VIP scores of traits.</p>
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21 pages, 2415 KiB  
Article
Factors Influencing Carbon Emission and Low-Carbon Development Levels in Shandong Province: Method Analysis Based on Improved Random Forest Partial Least Squares Structural Equation Model and Entropy Weight Method
by Yingjie Zhu, Yinghui Guo, Yongfa Chen, Jiageng Ma and Dan Zhang
Sustainability 2024, 16(19), 8488; https://doi.org/10.3390/su16198488 - 29 Sep 2024
Viewed by 813
Abstract
Comprehensively clarifying the influencing factors of carbon emissions is crucial to realizing carbon emission reduction targets in China. To address this issue, this paper develops a four-level carbon emission influencing factor system from six perspectives: population, economy, energy, water resources, main pollutants, and [...] Read more.
Comprehensively clarifying the influencing factors of carbon emissions is crucial to realizing carbon emission reduction targets in China. To address this issue, this paper develops a four-level carbon emission influencing factor system from six perspectives: population, economy, energy, water resources, main pollutants, and afforestation. To analyze how these factors affect carbon emissions, we propose an improved partial least squares structural equation model (PLS-SEM) based on a random forest (RF), named RF-PLS-SEM. In addition, the entropy weight method (EWM) is employed to evaluate the low-carbon development level according to the results of the RF-PLS-SEM. This paper takes Shandong Province as an example for empirical analysis. The results demonstrate that the improved model significantly improves accuracy from 0.8141 to 0.9220. Moreover, water resources and afforestation have relatively small impacts on carbon emissions. Primary and tertiary industries are negative influencing factors that inhibit the growth of carbon emissions, whereas total energy consumption, the volume of wastewater discharged and of common industrial solid waste are positive and direct influencing factors, and population density is indirect. In particular, this paper explores the important role of fisheries in reducing carbon emissions and discusses the relationship between population aging and carbon emissions. In terms of the level of low-carbon development, the assessment system of carbon emission is constructed from four dimensions, namely, population, economy, energy, and main pollutants, showing weak, basic, and sustainable stages of low-carbon development during the 1997–2012, 2013–2020, and 2021–2022 periods, respectively. Full article
(This article belongs to the Special Issue Energy Sources, Carbon Emissions and Economic Growth)
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Graphical abstract

Graphical abstract
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<p>Carbon emissions of 34 provinces in China in 2021. Source of data: the carbon emission data for 30 provinces in China (excluding Hong Kong, Macao, Taiwan, and Tibet Autonomous Region) in 2021 were obtained from the China Emission Accounts and Datasets (CEADs), and the data for Hong Kong, Macao, Taiwan, and the Tibet Autonomous Region were obtained from the Environment and Ecology Bureau, the Environmental Protection Bureau of the Macao Special Administrative Region, the BIOSIS Previews database and the China Tibet News Network, respectively. The green line in the figure represents the Qinling-Huaihe River demarcation line, and the blue line, and the blue lines on the map represent islands or coastlines.</p>
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<p>Carbon emission empirical indicator system.</p>
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<p>Feature screening results for RF.</p>
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<p>The system of terminal indicators.</p>
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<p>Latent variables path analysis of carbon emissions. Note: the paths representing positive influencing factors are depicted as solid black lines, whereas the paths for negative influencing factors are shown as red dashed lines.</p>
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<p>Path analysis of disaggregated economic indicators and carbon emissions and their influencing factors. Note: the paths representing positive influencing factors are depicted as solid black lines, whereas those for negative influencing factors are shown as red dashed lines.</p>
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<p>Low-carbon development level score by subsystem.</p>
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<p>Overall score for the level of low-carbon development. Note: The blue line graph represents the growth rate of the low-carbon development level score.</p>
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13 pages, 2563 KiB  
Article
Non-Targeted Metabolomics of Serum Reveals Biomarkers Associated with Body Weight in Wumeng Black-Bone Chickens
by Zhong Wang, Xuan Yu, Shenghong Yang, Mingming Zhao and Liqi Wang
Animals 2024, 14(18), 2743; https://doi.org/10.3390/ani14182743 - 23 Sep 2024
Viewed by 626
Abstract
Growth performance is an important economic trait of broilers but the related serum metabolomics remains unclear. In this study, we utilized non-targeted metabolomics using ultra-high-performance liquid phase tandem mass spectrometry (UHPLC-MS/MS) to establish metabolite profiling in the serum of Chinese Wumeng black-bone chickens. [...] Read more.
Growth performance is an important economic trait of broilers but the related serum metabolomics remains unclear. In this study, we utilized non-targeted metabolomics using ultra-high-performance liquid phase tandem mass spectrometry (UHPLC-MS/MS) to establish metabolite profiling in the serum of Chinese Wumeng black-bone chickens. The biomarker metabolites in serum associated with growth performance of chickens were identified by comparing the serum metabolome differences between chickens that significantly differed in their weights at 160 days of age when fed identical diets. A total of 766 metabolites were identified including 13 differential metabolite classes such as lipids and lipid-like molecules, organic acids and their derivatives, and organoheterocyclic compounds. The results of difference analysis using a partial least squares discriminant analysis (PLS-DA) model indicated that the low-body-weight group could be differentiated based on inflammatory markers including prostaglandin a2, kynurenic acid and fatty acid esters of hydroxy fatty acids (FAHFA), and inflammation-related metabolic pathways including tryptophan and arachidonic acid metabolism. In contrast, the sera of high-body-weight chickens were enriched for riboflavin and 2-isopropylmalic acid and for metabolic pathways including riboflavin metabolism, acetyl group transfer into mitochondria, and the tricarboxylic acid (TCA) cycle. These results provide new insights into the practical application of improving the growth performance of local chickens. Full article
(This article belongs to the Special Issue Metabolic Disorders of Poultry)
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<p>Body weights of chickens in the high- and low-body-weight groups. (<b>A</b>) Body weight of chickens at 160 days of age. (<b>B</b>) Comparison of body weight between the WH/WL groups. WH: high-body-weight group, <span class="html-italic">n</span> = 16; WL: low-body-weight group, <span class="html-italic">n</span> = 16.</p>
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<p>Metabolite types in the serum metabolome of Wumeng black-bone chickens. A total of 13 types of metabolites and some unclassified metabolites were identified. The number above the column is the number of metabolites of each type. The pie chart at the top right illustrates the proportion of metabolites in each superclass.</p>
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<p>Analysis of serum metabolome of chickens in the WH and WL groups. PLS-DA analysis of non-targeted serum metabolites of chickens in the WH (<span class="html-italic">n</span> = 16) and WL (<span class="html-italic">n</span> = 16) group in (<b>A</b>) positive and (<b>B</b>) negative ion modes. Differential serum metabolites between the WH and WL groups and their VIP scores in (<b>C</b>) positive and (<b>D</b>) negative ion modes.</p>
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<p>Enrichment analysis of metabolic pathways of serum differential metabolites in high- and low-body-weight groups. (<b>A</b>) High-body-weight group; (<b>B</b>) low-body-weight group.</p>
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19 pages, 4648 KiB  
Article
Optimal Realization of Distributed Arithmetic-Based MAC Adaptive FIR Filter Architecture Incorporating Radix-4 and Radix-8 Computation
by Britto Pari James, Man-Fai Leung, Dhandapani Vaithiyanathan and Karuthapandian Mariammal
Electronics 2024, 13(17), 3551; https://doi.org/10.3390/electronics13173551 - 6 Sep 2024
Viewed by 490
Abstract
Finite impulse response (FIR) filters are explicitly used in decisive applications such as communication and signal processing areas. Advancement in the latest technologies necessitates specific designs with optimal characteristics. This research work proposes the realization of an efficient distributed arithmetic adaptive FIR filter [...] Read more.
Finite impulse response (FIR) filters are explicitly used in decisive applications such as communication and signal processing areas. Advancement in the latest technologies necessitates specific designs with optimal characteristics. This research work proposes the realization of an efficient distributed arithmetic adaptive FIR filter (DAAFA) architecture using radix-4 and radix-8 computation. Distributed arithmetic (DA) is extensively used to calculate the sum of products without involving a multiplier. The proposed fixed-point realization of a single multiply and accumulate (MAC) FIR adaptive filter is implemented with minimum complex design. The total longest-way computation time is a combination of the delay that occurred in the error calculation module and the delay involved in updating the filter weights. The longest-way computation time of the filter structure is higher, which results in increased latency. In addition, the approximate design of the radix DA multiplier structure is constructed using Booth recoding, partial product formation block and shifting-based accumulation block. Further, the approximate design of DA offers a reduction in complexity and area with respect to the number of slices and enhances the operating speed. The partial product is created using shifters and efficient adders, which further enhances the performance of the realization. This work is implemented in Xilinx and Altera devices and is compared with the present literature. From the synthesis results, it is observed that the propounded design outperforms in terms of complexity, slice delay product and ultimate speed of exertion. The suggested architecture was found to be decisive in terms of area, delay and complexity abatement. The results indicate that the propounded design achieves area reduction (slices) of about 92.03% compared to the existing design. Also, a speed enhancement of about 90.7% is accomplished for the proposed architecture. Nonetheless, the devised architecture utilizes the least means square approach, which enhances the convergence rate notably. Full article
(This article belongs to the Section Computer Science & Engineering)
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<p>Traditional adaptive framework.</p>
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<p>Partial product generation of radix-4 (R4PPG).</p>
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<p>Radix-8 partial product generation (R8PPG).</p>
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<p>DAAFA with radix-4 architecture.</p>
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<p>DAFFA with radix-8 architecture.</p>
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<p>Block for the proposed framework.</p>
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<p>FIL block for the proposed structure.</p>
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<p>FIL block for the proposed structure.</p>
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<p>Characteristics with various M = µ.</p>
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<p>Verilog result of suggested filter structure.</p>
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<p>RTL representation of the suggested structure.</p>
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<p>Area (number of slices) analysis of proposed architecture with the reported works.</p>
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<p>Speed comparison with the reported works.</p>
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<p>Complexity comparison of proposed and reported works [<a href="#B10-electronics-13-03551" class="html-bibr">10</a>].</p>
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<p>Maximum sampling frequency comparison [<a href="#B10-electronics-13-03551" class="html-bibr">10</a>].</p>
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14 pages, 2564 KiB  
Article
LC/MS-Based Untargeted Lipidomics Reveals Lipid Signatures of Sarcopenia
by Qianwen Yang, Zhiwei Zhang, Panpan He, Xueqian Mao, Xueyi Jing, Ying Hu and Lipeng Jing
Int. J. Mol. Sci. 2024, 25(16), 8793; https://doi.org/10.3390/ijms25168793 - 13 Aug 2024
Viewed by 1051
Abstract
Sarcopenia, a multifactorial systemic disorder, has attracted extensive attention, yet its pathogenesis is not fully understood, partly due to limited research on the relationship between lipid metabolism abnormalities and sarcopenia. Lipidomics offers the possibility to explore this relationship. Our research utilized LC/MS-based nontargeted [...] Read more.
Sarcopenia, a multifactorial systemic disorder, has attracted extensive attention, yet its pathogenesis is not fully understood, partly due to limited research on the relationship between lipid metabolism abnormalities and sarcopenia. Lipidomics offers the possibility to explore this relationship. Our research utilized LC/MS-based nontargeted lipidomics to investigate the lipid profile changes as-sociated with sarcopenia, aiming to enhance understanding of its underlying mechanisms. The study included 40 sarcopenia patients and 40 control subjects matched 1:1 by sex and age. Plasma lipids were detected and quantified, with differential lipids identified through univariate and mul-tivariate statistical analyses. A weighted correlation network analysis (WGCNA) and MetaboAna-lyst were used to identify lipid modules related to the clinical traits of sarcopenia patients and to conduct pathway analysis, respectively. A total of 34 lipid subclasses and 1446 lipid molecules were detected. Orthogonal partial least squares discriminant analysis (OPLS-DA) identified 80 differen-tial lipid molecules, including 38 phospholipids. Network analysis revealed that the brown module (encompassing phosphatidylglycerol (PG) lipids) and the yellow module (containing phosphati-dylcholine (PC), phosphatidylserine (PS), and sphingomyelin (SM) lipids) were closely associated with the clinical traits such as maximum grip strength and skeletal muscle mass (SMI). Pathway analysis highlighted the potential role of the glycerophospholipid metabolic pathway in lipid me-tabolism within the context of sarcopenia. These findings suggest a correlation between sarcopenia and lipid metabolism disturbances, providing valuable insights into the disease’s underlying mechanisms and indicating potential avenues for further investigation. Full article
(This article belongs to the Section Molecular Endocrinology and Metabolism)
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<p>Statistical chart of lipid subclasses and lipid molecule counts. (Note: The horizontal axis represents the detected lipid subclasses, while the vertical axis shows the number of lipid molecules within each subclass).</p>
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<p>Statistical chart of lipid subclasses and lipid molecule counts.</p>
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<p>Differential lipid molecules between the two groups—volcano plot. The x-axis in the figure represents the log2-transformed fold change values of differential expression, and the y-axis represents the log10-transformed <span class="html-italic">p</span> value. (Note: Compared to the control group, red indicates the upregulation of lipid molecules in the disease group, blue indicates downregulation, and gray represents no significant difference).</p>
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<p>OPLS-DA score plot and permutation test. (<b>A</b>) OPLS-DA score plot of the two groups. The <span class="html-italic">x</span>-axis and <span class="html-italic">y</span>-axis represent the first and second principal components, respectively. Dots of the same color represent various biological replicates within the group. Red represents the sarcopenia group, and green represents the control group. The distribution of dots reflects the degree of difference between and within groups. (<b>B</b>) Permutation test of the OPLS-DA model. The <span class="html-italic">x</span>-axis represents the permuted Q2 values, and the <span class="html-italic">y</span>-axis indicates the frequency of these values.</p>
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<p>Matchsticks of the 15 most significantly upregulated and downregulated lipids.</p>
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<p>Correlation between lipid metabolism modules and clinical features using WGCNA. (<b>A</b>) Determination of optimal soft threshold power for network construction. The red line in <a href="#ijms-25-08793-f006" class="html-fig">Figure 6</a> (<b>A</b>) indicates the threshold for achieving a scale-free topology model fit with RsquaredCut &gt; 0.9, which is considered optimal for network construction. (<b>B</b>) A module dendrogram was used to illustrate the lipid distribution across different modules. (<b>C</b>) Pearson correlation analysis of the network mod-ules and continuous demographic characteristics of the sarcopenia samples. The color gradient signifies the direction and strength of the correlation, with red indicating positive correlations and blue indicating negative correlations. The numbers inside the boxes represent the correlation coefficients, and the values in parentheses show the corresponding <span class="html-italic">p</span> values.</p>
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<p>Pathway enrichment analysis of differential lipid molecules (NOTES: The <span class="html-italic">x</span>-axis shows the impact score of each pathway. A higher value indicates a greater impact. The <span class="html-italic">y</span>-axis shows the statistical significance of the pathway enrichment, with higher values indicating more significant enrichment. The bubble size represents the number of lipid molecules in each pathway. Colors range from yellow to red, with red indicating a higher significance).</p>
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12 pages, 278 KiB  
Article
Short-Term Atorvastatin Therapy in Healthy Individuals Results in Unaltered Plasma MMP Levels and Disrupted MMP-7 Correlation with Blood Lipids and Blood Count-Derived Inflammatory Markers
by Ion Bogdan Mănescu, Măriuca Mănescu, Laura Iulia Bărcuțean, Liliana Demian and Minodora Dobreanu
J. Clin. Med. 2024, 13(16), 4743; https://doi.org/10.3390/jcm13164743 - 13 Aug 2024
Viewed by 919
Abstract
Background: Matrix metalloproteinases (MMPs) play an important role in the pathophysiology of atherosclerosis. Reportedly, statins can decrease MMP activity in patients with atherosclerotic cardiovascular disease, but this effect has not been studied in healthy individuals. Methods: MMPs 2, 7, and 9 [...] Read more.
Background: Matrix metalloproteinases (MMPs) play an important role in the pathophysiology of atherosclerosis. Reportedly, statins can decrease MMP activity in patients with atherosclerotic cardiovascular disease, but this effect has not been studied in healthy individuals. Methods: MMPs 2, 7, and 9 and several other parameters were measured before and after a four-week course of moderate-dose atorvastatin (20 mg/day) in 21 healthy individuals. Results: Atorvastatin treatment resulted in lower total cholesterol, LDL-cholesterol, non-HDL-cholesterol, and triglycerides (p < 0.001 for all), but higher levels of plasma enzymes AST, ALT, CK, and LDH (p < 0.05 for all). No effect of atorvastatin on plasma MMP median concentrations was recorded. Before treatment, moderate positive significant correlations were found between MMP-7 and age, blood lipids, and blood count-derived inflammatory markers. Pre-treatment MMP-7 was best predicted by the total cholesterol-to-HDL cholesterol ratio in a remnant cholesterol-weighted least squares regression model. After atorvastatin treatment, MMP-7 no longer correlated with these markers. Conclusions: While the effect of statins on plasma MMPs in atherosclerosis is controversial, short-term moderate-dose atorvastatin treatment does not seem to affect levels of MMPs 2, 7, and 9 in healthy individuals. However, an intriguing correlation between MMP-7 and atherosclerosis-related blood lipids and neutrophil-associated inflammatory biomarkers seems to be disrupted by atorvastatin independently of hsCRP, possibly via pleiotropic effects. Full article
18 pages, 3511 KiB  
Article
Maximizing Bioactive Compound Extraction from Mandarin (Citrus reticulata) Peels through Green Pretreatment Techniques
by Dimitrios Kalompatsios, Alexandra-Ioana Ionescu, Vassilis Athanasiadis, Theodoros Chatzimitakos, Martha Mantiniotou, Konstantina Kotsou, Eleni Bozinou and Stavros I. Lalas
Oxygen 2024, 4(3), 307-324; https://doi.org/10.3390/oxygen4030018 - 11 Aug 2024
Viewed by 916
Abstract
This study explored the use of mandarin peels as an important source of health-promoting compounds by utilizing green methods (i.e., pulsed electric field and ultrasound-assisted extraction), along with conventional stirring. The impact of several extraction parameters, such as extraction duration, temperature, and solvent [...] Read more.
This study explored the use of mandarin peels as an important source of health-promoting compounds by utilizing green methods (i.e., pulsed electric field and ultrasound-assisted extraction), along with conventional stirring. The impact of several extraction parameters, such as extraction duration, temperature, and solvent composition, on the recovery of bioactive compounds was evaluated through a response surface methodology. To identify the most effective conditions for all assays, a partial least-squares analysis was implemented. It was revealed that a combination of the above techniques was optimal at 80 °C for 30 min, with 75% v/v of ethanol in water as the extraction solvent. The concentration of bioactive compounds in the optimum extract had a total polyphenol content of 18.69 mg of gallic acid equivalents (GAE) per gram of dry weight (dw), and an ascorbic acid concentration of 18.25 mg/g dw. However, correlation analyses revealed a rather negative relationship between these bioactive compounds. The chromatographic analysis of optimum extracts supported this result by quantifying 20.53 mg/g dw of total individual polyphenols, with hesperidin being the dominant compound (13.98 mg/g dw). The antioxidant assays, including ferric-reducing antioxidant power and DPPH inhibition activity, were measured at 123.21 and 65.12 μmol of ascorbic acid equivalents (AAE) per gram of dw, respectively. This research enhances the valorization of mandarin peels as a renewable source of bioactive compounds, providing the opportunity to generate high-added-value products from food waste in the food and pharmaceutical sectors. Full article
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<p>The extraction procedure of mandarin peel powder using a stirring process and pretreatment techniques.</p>
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<p>The optimal extraction of mandarin peel extracts in 3D graphs shows the impact of the process variables considered in the response (total polyphenol content—TPC, mg GAE/g). Plot (<b>A</b>), covariation of <span class="html-italic">X</span><sub>1</sub> and <span class="html-italic">X</span><sub>2</sub>; plot (<b>B</b>), covariation of <span class="html-italic">X</span><sub>1</sub> and <span class="html-italic">X</span><sub>3</sub>; plot (<b>C</b>), covariation of <span class="html-italic">X</span><sub>1</sub> and <span class="html-italic">X</span><sub>4</sub>; plot (<b>D</b>), covariation of <span class="html-italic">X</span><sub>2</sub> and <span class="html-italic">X</span><sub>3</sub>; plot (<b>E</b>), covariation of <span class="html-italic">X</span><sub>2</sub> and <span class="html-italic">X</span><sub>4</sub>; plot (<b>F</b>), covariation of <span class="html-italic">X</span><sub>3</sub> and <span class="html-italic">X</span><sub>4</sub>.</p>
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<p>Pareto plots of transformed estimates for TPC (<b>A</b>), FRAP (<b>B</b>), DPPH (<b>C</b>), and AAC (<b>D</b>) assays. A gold line is drawn on the plot as a reference to indicate the significance level (<span class="html-italic">p</span> &lt; 0.05). The cumulative sum grey line in the plots sums the absolute values of the estimates.</p>
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<p>Principal component analysis (PCA) for the investigated measured variables. Each <span class="html-italic">X</span> variable is highlighted with a blue color.</p>
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<p>Partial least-squares (PLS) prediction profiler of each variable and desirability function with extrapolation control for the optimization of mandarin peel extracts.</p>
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<p>A representative HPLC chromatogram of the optimal mandarin peel extract reveals the presence of identified polyphenolic compounds at 280 and 320 nm. 1: Neochlorogenic acid; 2: catechin; 3: chlorogenic acid; 4: vanillic acid; 5: Ferulic acid; 6: rutin; 7: quercetin 3-<span class="html-italic">D</span>-galactoside; 8: luteolin-7-glucoside; 9: narirutin; 10: hesperidin; 11: kaempferol.</p>
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24 pages, 1072 KiB  
Article
Evaluation of Total Risk-Weighted Assets in Islamic Banking through Fintech Innovations
by Asma S. Alzwi, Jamil J. Jaber, Hani Nuri Rohuma and Rania Al Omari
J. Risk Financial Manag. 2024, 17(7), 288; https://doi.org/10.3390/jrfm17070288 - 8 Jul 2024
Viewed by 1024
Abstract
The assessment of total risk-weighted assets (LTRWAs) in the banking sector is of the utmost importance. It serves as a critical component for regulatory compliance, risk management, and capital adequacy. By accurately assessing LTRWAs, banks can effectively meet regulatory requirements, efficiently allocate capital [...] Read more.
The assessment of total risk-weighted assets (LTRWAs) in the banking sector is of the utmost importance. It serves as a critical component for regulatory compliance, risk management, and capital adequacy. By accurately assessing LTRWAs, banks can effectively meet regulatory requirements, efficiently allocate capital resources, and proactively manage risks. Moreover, the accurate assessment of LTRWAs supports performance evaluation and fosters investor confidence in the financial stability of banks. This study presents statistical analyses and machine learning methods to identify factors influencing LTRWAs. Data from Bahrain, Jordan, Qatar, the United Arab Emirates, and Yemen, spanning from 2010 to 2021, was utilized. Various statistical tests and models, including ordinary least squares, fixed effect, random effect, correlation, variance inflation factor, tolerance tests, and fintech models, were conducted. The results indicated significant impacts of the unemployment rate, inflation rate, natural logarithm of the loan-to-asset ratio, and natural logarithm of total assets on LTRWAs in regression models. The dataset was divided into a training group (90% of the data) and a testing group (10% of the data) to evaluate the predictive capabilities of various fintech models, including an adaptive network-based fuzzy inference system (ANFIS), a hybrid neural fuzzy inference system (HyFIS), a fuzzy system with the heuristic gradient descent (FS.HGD), and fuzzy inference rules with the descent method (FIR.DM) models. The selection of the optimal model is contingent upon assessing its performance according to specific error criteria. The HyFIS model outperformed others with lower errors in predicting LTRWAs. Independent t-tests confirmed statistically significant differences between original and predicted LTRWA for all models, with HyFIS showing closer predictions. This study provides valuable insights into LTRWA prediction using advanced statistical and machine learning techniques, based on a dataset from multiple countries and years. Full article
(This article belongs to the Special Issue Emerging Issues in Economics, Finance and Business)
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<p>Flowchart based on FinTech models (ANFIS, HyFIS, FS.HGD, and FIR.DM).</p>
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<p>ANFIS flowchart of n inputs and one output with five rules.</p>
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<p>Scatter plot of residuals and fitted values for multiple regression.</p>
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19 pages, 6816 KiB  
Article
Exploring the Differentiated Impact of Urban Spatial Form on Carbon Emissions: Evidence from Chinese Cities
by Xiaoyue Zeng, Deliang Fan, Yunfei Zheng and Shijie Li
Land 2024, 13(6), 874; https://doi.org/10.3390/land13060874 - 18 Jun 2024
Viewed by 1454
Abstract
The role of spatial factors in reducing carbon emissions has been receiving increasing attention from researchers; however, these impacts may involve spatial heterogeneity. In this study, 337 prefecture-level cities in China were taken as the research object. Based on national-level urban data, the [...] Read more.
The role of spatial factors in reducing carbon emissions has been receiving increasing attention from researchers; however, these impacts may involve spatial heterogeneity. In this study, 337 prefecture-level cities in China were taken as the research object. Based on national-level urban data, the global impact of urban spatial form on carbon emissions was then investigated using ordinary least squares regression, the spatial error model, and the spatial lag model. The local effects of urban spatial form on carbon emissions in different cities were then investigated using geographically weighted regression. The findings are as follows. Overall, the larger the urban built-up area and the more fragmented and decentralized the urban land use, the greater the carbon emissions. Conversely, the more centralized the urban center of a city, the lower its carbon emissions. Locally, for some Chinese cities, the total area, landscape shape index, and mean Euclidean nearest-neighbor distance were found to have significant positive effects on carbon emissions, while the largest-patch index had a significant negative impact. For all Chinese cities, the patch density was found to have no significant effect on carbon emissions. In 29% of the cities in which the landscape division index was found to significantly affect carbon emissions, this effect was positive, while it was negative in the remaining 71%. The policy implications emerging from this study lie in the need for decision-makers and urban planners to guide the shaping of low-carbon urban spatial forms. Full article
(This article belongs to the Special Issue Urban Resilience and Urban Sustainability under Climate Change)
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<p>Summary of system for estimating urban carbon emissions from nighttime lighting data.</p>
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<p>Nighttime lighting map of China.</p>
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<p>Spatial distribution of China’s population.</p>
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<p>Comparison of accounting values and estimated values of carbon emissions.</p>
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<p>Map of China’s land use.</p>
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<p>Spatial distributions of indicators of urban spatial form in China.</p>
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<p><span class="html-italic">R</span><sup>2</sup> distribution of GWR results.</p>
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<p>Distributions of coefficients of independent variables in GWR results.</p>
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16 pages, 5909 KiB  
Article
Integrated Metabolome and Transcriptome Analyses Provide New Insights into the Leaf Color Changes in Osmanthus fragrans cv. ‘Wucaigui’
by Songyue Zhang, Hanruo Qiu, Rui Wang, Lianggui Wang and Xiulian Yang
Forests 2024, 15(4), 709; https://doi.org/10.3390/f15040709 - 17 Apr 2024
Viewed by 1048
Abstract
Osmanthus fragrans, belonging to the family Oleaceae, is listed as one of the most important traditional ornamental plant species in China. A new cultivar O. fragrans ‘Wucaigui’ has a very diversified form in terms of leaf colors, in which the leaf color changes [...] Read more.
Osmanthus fragrans, belonging to the family Oleaceae, is listed as one of the most important traditional ornamental plant species in China. A new cultivar O. fragrans ‘Wucaigui’ has a very diversified form in terms of leaf colors, in which the leaf color changes from red to yellow-green and finally to dark green. To understand the mechanisms involved in leaf color changes, metabolome and transcriptome studies were performed on leaves at different developmental stages. A total of 79 metabolites, two chlorophyll, 26 carotenoids, and 51 anthocyanins, were detected in the 6 different developmental stages. An orthogonal partial least squares discriminant analysis identified key metabolites at different developmental stages, including lutein, pelargonidin-3-O-(6-O-p-coumaroyl)-glucoside, neoxanthin, and α-carotene. A total of 48,837 genes were obtained by transcriptome sequencing, including 3295 novel genes. Using a weighted gene co-expression network analysis to study the correlations between key metabolites and differentially expressed genes, we determined the characteristic modules having the highest correlations with key metabolites and selected associated candidate genes. Five genes (OfSHOU4L, OfATL1B, OfUGE5 OfEIF1AX, and OfUGE3) were finally identified as hub genes using real-time fluorescence quantitative PCR. In addition, we proposed a model based on the changes in key metabolite contents and the network regulatory map during the changes in O. fragrans ‘Wucaigui’ leaf color. The positive regulation of OfUGE3 led to an increase in the lutein content, which resulted in the leaves changing from grayish brown to moderate brown; during the change from moderate brown to dark greenish-yellow, the positive regulation of three genes (OfHOU4L, OfATL1B, and OfUGE5) increased the content of pelargonidin-3-O-(6-O-p-coumaroyl)-glucoside and the red color of the leaves gradually faded to dark greenish-yellow and then to strong yellow-green; the positive regulation of OfEIF1AX increased the content of neoxanthin; the stages in which the color changed from strong yellow-green to yellow-green and then to moderate olive-green were positively regulated by OfUGE3, which resulted in higher α-carotene content. These findings provided new insights into the mechanisms underlying the processes involved in O. fragrans ‘Wucaigui’ leaf color changes at the metabolic and transcriptional levels. This work seeks to contribute to the development of artificial regulate and control technology in the breeding and production of O. fragrans and other ornamental plants. Full article
(This article belongs to the Section Genetics and Molecular Biology)
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<p>Six stages of <span class="html-italic">O. fragrans</span> ‘Wucaigui’ leaf development. S1: grayish-brown; S2: moderate brown; S3: dark greenish-yellow; S4: strong yellow-green; S5: yellow-green; S6: moderate olive-green.</p>
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<p>Comparisons of differentially expressed genes from <span class="html-italic">O. fragrans</span> ‘Wucaigui’ leaves at different developmental stages. S1: grayish-brown; S2: moderate brown; S3: dark greenish-yellow; S4: strong yellow-green; S5: yellow-green; S6: moderate olive-green.</p>
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<p>The score plot of pigment contents in <span class="html-italic">O. fragrans</span> ‘Wucaigui’ leaves at different developmental stages as determined by an OPLS-DA. S1: grayish-brown; S2: moderate brown; S3: dark greenish-yellow; S4: strong yellow-green; S5: yellow-green; S6: moderate olive-green.</p>
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<p>Metabolic substance contents and characteristic modules. (<b>A</b>) Carotenoid characteristic modules. (<b>B</b>) Anthocyanin characteristic modules. Each column represents a metabolic substance and each row represents a genetic module. The number in each grid represents the correlation between the module and the gene. The number in parentheses represents the <span class="html-italic">p</span>-value. The smaller the <span class="html-italic">p</span>-value, the stronger the significance of the representativeness and module correlation.</p>
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<p>Number of genes in each feature module.</p>
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<p>The qRT-PCR validation of the transcriptome data results for hub genes. (<b>A</b>) Hub genes of anthocyanin up-regulation in the ‘white’ module. (<b>B</b>) Hub genes of carotenoid up-regulation in the ‘mediumorchid’ module. (<b>C</b>) Hub genes of carotenoid up-regulation in the ‘orangered 4’ module. S1: grayish-brown; S2: moderate brown; S3: dark greenish-yellow; S4: strong yellow-green; S5: yellow-green; S6: moderate olive-green.</p>
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<p>Proposed model of leaf color changes in <span class="html-italic">O. fragrans</span> ‘Wucaigui’. S1: grayish-brown; S2: moderate brown; S3: dark greenish-yellow; S4: strong yellow-green; S5: yellow-green; S6: moderate olive-green.</p>
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18 pages, 3315 KiB  
Article
Insights into the Chemistry and Functional Properties of Edible Mushrooms Cropped in the Northeastern Highlands of Puebla, Mexico
by Yesenia Pacheco-Hernández, Edmundo Lozoya-Gloria, Clemente Mosso-González, Jenaro Leocadio Varela-Caselis and Nemesio Villa-Ruano
Appl. Sci. 2024, 14(6), 2520; https://doi.org/10.3390/app14062520 - 16 Mar 2024
Viewed by 1478
Abstract
Herein, we present an integrative investigation of the nutritional and nutraceutical potential of Lactarius indigo, Clitocybe nuda, Clitocybe subclavipes, Russula delica, Russula brevipes, Clitocybe squamulosa, and Amanita jacksonii, which are edible mushrooms consumed in the northeastern [...] Read more.
Herein, we present an integrative investigation of the nutritional and nutraceutical potential of Lactarius indigo, Clitocybe nuda, Clitocybe subclavipes, Russula delica, Russula brevipes, Clitocybe squamulosa, and Amanita jacksonii, which are edible mushrooms consumed in the northeastern highlands of Puebla, Mexico. The content of protein oscillated from 4.8 to 10.9 g 100 g−1 fresh weight (FW) whereas that of fiber ranged from 8.8 to 19.7 g 100 g−1 FW. The edible species presented low amounts of fat (1.5–3.4 g 100 g−1 FW) and reducing sugars (0.8–2.9 g 100 g−1 FW), whereas the content of vitamin C oscillated from 6.5 to 84.8 mg 100 g−1 dry weight (DW). In addition, four vitamins of B complex (thiamine, riboflavin, vitamin B6, and folate) were determined in different concentrations. A high abundance of potassium (92.3–294.3 mg 100 g−1 DW), calcium (139.1–446.9 mg 100 g−1 DW), and magnesium (81.3–339.1 mg 100 g−1 DW) was determined in most of the edible mushrooms, as well as detectable levels of p-hydroxybenzoic acid (2.2–48.7 mg 100 g−1 DW), protocatechuic acid (0.5–50.8 mg 100 g−1 DW), oleic acid (14.2–98.3 mg 100 g−1 DW), linoleic acid (748–1549.6 mg 100 g−1 DW), and linolenic acid (from 9.1 to 83.6 mg 100 g−1 DW). The total phenol content and antioxidant capacity significantly (p < 0.05) varied among the studied species, and their capacity to inhibit enzymes involved in glucose, lipid, and polyamine metabolism. Nevertheless, the hydroalcoholic extracts from A. jacksonii and L. indigo efficiently inhibited alpha-glucosidase and ornithine decarboxylase (IC50 < 50 µg mL−1), respectively. The evaluation of the same extracts on microorganisms associated with the gastrointestinal tract showed negligible toxicity on probiotics (MIC > 500 µg mL−1) and moderate toxicity against pathogenic bacteria (MIC < 400 µg mL−1). Based on the studied parameters, principal component analysis and orthogonal partial least squares discriminant analysis clustered these edible mushrooms into two main groups with similar biological or chemical properties. Full article
(This article belongs to the Section Food Science and Technology)
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<p>Some edible mushrooms sold in local markets of the northeastern highlands of Puebla, Mexico. (<b>A</b>) <span class="html-italic">Lactarius indigo</span>. (<b>B</b>) <span class="html-italic">Clitocybe nuda</span>. (<b>C</b>) <span class="html-italic">Clitocybe subclavipes</span>. (<b>D</b>) <span class="html-italic">Russula delica</span>. (<b>E</b>) <span class="html-italic">Russula brevipes</span>. (<b>F</b>) <span class="html-italic">Clitocybe squamulosa</span>. (<b>G</b>) <span class="html-italic">Amanita jacksonii</span>.</p>
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<p>Contents of protein (<b>a</b>), fiber (<b>b</b>), fat (<b>c</b>), and reducing sugars (<b>d</b>) in seven edible mushrooms consumed in the northeastern highlands of Puebla Mexico. 1, <span class="html-italic">Lactarius indigo</span>. 2, <span class="html-italic">Clitocybe nuda</span>. 3, <span class="html-italic">Clitocybe subclavipes</span>. 4, <span class="html-italic">Russula delica</span>. 5, <span class="html-italic">Russula brevipes</span>. 6, <span class="html-italic">Clitocybe squamulosa</span>. 7, <span class="html-italic">Amanita jacksonii</span>. Different letters indicate means (<span class="html-italic">n</span> = 10) with statistically significant differences by ANOVA-Tukey (<span class="html-italic">p</span> &lt; 0.05). Raw data can be consulted in <a href="#app1-applsci-14-02520" class="html-app">Table S1</a>. The concentrations are presented in fresh weight.</p>
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<p>Contents of linoleic acid (<b>a</b>), linolenic acid (<b>b</b>), and oleic acid (<b>c</b>) in seven edible mushrooms consumed in the northeastern highlands of Puebla Mexico. 1, <span class="html-italic">Lactarius indigo</span>. 2, <span class="html-italic">Clitocybe nuda</span>. 3, <span class="html-italic">Clitocybe subclavipes</span>. 4, <span class="html-italic">Russula delica</span>. 5, <span class="html-italic">Russula brevipes</span>. 6, <span class="html-italic">Clitocybe squamulosa</span>. 7, <span class="html-italic">Amanita jacksonii</span>. Different letters indicate means (<span class="html-italic">n</span> = 10) with statistically significant differences by ANOVA-Tukey (<span class="html-italic">p</span> &lt; 0.05). Raw data are presented in <a href="#app1-applsci-14-02520" class="html-app">Table S5</a>. The concentrations are presented in dry weight.</p>
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<p>Contents of vitamin C (<b>a</b>), thiamine (<b>b</b>), riboflavin (<b>c</b>), vitamin B<sub>6</sub> (<b>d</b>), and folic acid (<b>e</b>) in seven edible mushrooms consumed in the northeastern highlands of Puebla Mexico. 1, <span class="html-italic">Lactarius indigo</span>. 2, <span class="html-italic">Clitocybe nuda</span>. 3, <span class="html-italic">Clitocybe subclavipes</span>. 4, <span class="html-italic">Russula delica</span>. 5, <span class="html-italic">Russula brevipes</span>. 6, <span class="html-italic">Clitocybe squamulosa</span>. 7, <span class="html-italic">Amanita jacksonii</span>. Different letters indicate means (<span class="html-italic">n</span> = 10) with statistically significant differences by ANOVA-Tukey (<span class="html-italic">p</span> &lt; 0.05). Raw data are presented in <a href="#app1-applsci-14-02520" class="html-app">Table S2</a>. The concentrations are presented in dry weight.</p>
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<p>Contents of potassium (<b>a</b>), calcium (<b>b</b>), iron (<b>c</b>), sodium (<b>d</b>), zinc (<b>e</b>), and magnesium (<b>f</b>) in seven edible mushrooms consumed in the northeastern highlands of Puebla, Mexico. 1, <span class="html-italic">Lactarius indigo</span>. 2, <span class="html-italic">Clitocybe nuda</span>. 3, <span class="html-italic">Clitocybe subclavipes</span>. 4, <span class="html-italic">Russula delica</span>. 5, <span class="html-italic">Russula brevipes</span>. 6, <span class="html-italic">C. squamulosa</span>. 7, <span class="html-italic">Amanita jacksonii</span>. Different letters indicate means (<span class="html-italic">n</span> = 10) with statistically significant differences by ANOVA-Tukey (<span class="html-italic">p</span> &lt; 0.05). Raw data are presented in <a href="#app1-applsci-14-02520" class="html-app">Table S3</a>. The concentrations are presented in dry weight.</p>
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<p>Contents of <span class="html-italic">p</span>-hydroxybenzoic acid (<b>a</b>), <span class="html-italic">p</span>-coumaric acid (<b>b</b>), protocatechuic acid (<b>c</b>), and cinnamic acid (<b>d</b>) in seven edible mushrooms consumed in the northeastern highlands of Puebla Mexico. 1, <span class="html-italic">Lactarius indigo</span>. 2, <span class="html-italic">Clitocybe nuda</span>. 3, <span class="html-italic">Clitocybe subclavipes</span>. 4, <span class="html-italic">Russula delica</span>. 5, <span class="html-italic">Russula brevipes</span>. 6, <span class="html-italic">Clitocybe squamulosa</span>. 7, <span class="html-italic">Amanita jacksonii</span>. Different letters indicate means (<span class="html-italic">n</span> = 10) with statistically significant differences by ANOVA-Tukey (<span class="html-italic">p</span> &lt; 0.05) and spaces without bars indicate non-detectable compounds under assayed conditions. Raw data are presented in <a href="#app1-applsci-14-02520" class="html-app">Table S4</a>. The concentrations are presented in dry weight.</p>
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<p>Antioxidant potential of seven edible mushrooms consumed in the northeastern highlands of Puebla, Mexico. 1, <span class="html-italic">Lactarius indigo</span>. 2, <span class="html-italic">Clitocybe nuda</span>. 3, <span class="html-italic">Clitocybe subclavipes</span>. 4, <span class="html-italic">Russula delica</span>. 5, <span class="html-italic">Russula brevipes</span>. 6, <span class="html-italic">Clitocybe squamulosa</span>. 7, <span class="html-italic">Amanita jacksonii</span>. The total phenol content expressed in gallic acid equivalents (GAE; (<b>a</b>)) and the antioxidant capacity expressed in trolox equivalents (TEAC µM/g; (<b>b</b>) are shown. Different letters indicate means (<span class="html-italic">n</span> = 15) with statistically significant differences by ANOVA-Tukey (<span class="html-italic">p</span> &lt; 0.05). Raw data are presented in <a href="#app1-applsci-14-02520" class="html-app">Table S6</a>. The concentrations are presented in dry weight.</p>
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<p>Inhibitory activity (IC<sub>50</sub>) of the ethanolic extracts from seven edible mushrooms consumed in the northeastern highlands of Puebla, Mexico on lipase (<b>a</b>), AG (<b>b</b>), AA (<b>c</b>), HMG-CoA reductase (<b>d</b>), and ODC (<b>e</b>). 1, <span class="html-italic">Lactarius indigo</span>. 2, <span class="html-italic">Clitocybe nuda</span>. 3, <span class="html-italic">Clitocybe subclavipes</span>. 4, <span class="html-italic">Russula delica</span>. 5, <span class="html-italic">Russula brevipes</span>. 6, <span class="html-italic">Clitocybe squamulosa</span>. 7, <span class="html-italic">Amanita jacksonii</span>. Different letters indicate means (<span class="html-italic">n</span> = 25) with statistically significant differences by ANOVA-Tukey (<span class="html-italic">p</span> &lt; 0.05) and spaces without bars indicate undetectable activity under assayed conditions. Raw data can be consulted in <a href="#app1-applsci-14-02520" class="html-app">Table S7</a>.</p>
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<p>Discriminant statistical analysis for the edible mushrooms <span class="html-italic">Lactarius indigo</span>, <span class="html-italic">Clitocybe nuda</span>, <span class="html-italic">Clitocybe subclavipes</span>, <span class="html-italic">Russula delica</span>, <span class="html-italic">Russula brevipes</span>, <span class="html-italic">Clitocybe squamulosa</span>, and <span class="html-italic">Amanita jacksonii</span>. (<b>A</b>) principal component analysis. (<b>B</b>) orthogonal partial least squares discriminant analysis. (<b>C</b>) validation of orthogonal partial least squares discriminant analysis (R<sup>2</sup> = 1 and Q<sup>2</sup> = 0.997). (<b>D</b>) S-plot of orthogonal partial least squares discriminant analysis. (<b>C</b>) validation of orthogonal partial least squares discriminant analysis showing the dispersion of studied variables.</p>
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10 pages, 253 KiB  
Article
Effects of Supplemental Benzoic Acid, Bromelain, Adipic Acid, and Humic Substances on Nitrogen Utilization, Urine pH, Slurry pH, and Manure Odorous Compounds in Pigs
by Seung Bin Yoo, Yoon Soo Song, Siyoung Seo and Beob Gyun Kim
Animals 2024, 14(1), 82; https://doi.org/10.3390/ani14010082 - 25 Dec 2023
Cited by 1 | Viewed by 1445
Abstract
The objective was to evaluate the effects of benzoic acid, bromelain, adipic acid, and humic substance supplementation on nitrogen balance, urinary pH, slurry pH, and manure odorous compounds in pigs. Fifteen castrated male pigs with an initial body weight of 37.9 kg (standard [...] Read more.
The objective was to evaluate the effects of benzoic acid, bromelain, adipic acid, and humic substance supplementation on nitrogen balance, urinary pH, slurry pH, and manure odorous compounds in pigs. Fifteen castrated male pigs with an initial body weight of 37.9 kg (standard deviation = 4.1) were individually housed in metabolism crates. The animals were allocated to a triplicated 5 × 2 incomplete Latin square design with 15 animals, 5 experimental diets, and 2 periods. The basal diet mainly consisted of corn, soybean meal, and rapeseed meal. Four experimental diets were prepared by supplementing each additive at a concentration of 10 g/kg at the expense of corn starch to the basal diet. Each period consisted of a 4-day adaptation period, a 24 h collection period for slurry sampling, and a 4-day collection period for feces and urine. The feces and urine collected for 24 h on day 5 were mixed at a ratio of fecal weight and urine weight to obtain slurry samples. The apparent total tract digestibility N in pigs fed the humic substance diet was the least (p < 0.05) compared to the other groups. The daily retained N and N retention as % ingested tended (p < 0.10) to be the lowest in the adipic acid group among the treatments. The urinary pH in pigs fed the adipic acid diet was less (p < 0.05) than that in other groups except the benzoic acid group. The slurry pH tended to differ among the treatment groups (p = 0.074) with the lowest value in the pigs fed the adipic acid diet. The concentrations of indole in slurry (p = 0.084) and isovalerate in feces (p = 0.062) tended to differ among the groups with the lowest values in the pigs fed the humic substance diet. In conclusion, adipic acid supplementation in pig diets can decrease urinary pH and slurry pH. Although benzoic acid and adipic acid have limited effects in reducing odorous compounds, humic substances have the potential to reduce some odorous compounds. Full article
(This article belongs to the Section Animal Nutrition)
18 pages, 3742 KiB  
Article
Proteomic Analysis Identifies Distinct Protein Patterns for High Ovulation in FecB Mutant Small Tail Han Sheep Granulosa Cells
by Xiangyu Wang, Xiaofei Guo, Xiaoyun He, Ran Di, Xiaosheng Zhang, Jinlong Zhang and Mingxing Chu
Animals 2024, 14(1), 11; https://doi.org/10.3390/ani14010011 - 19 Dec 2023
Viewed by 1342
Abstract
The Booroola fecundity (FecB) mutation in the bone morphogenetic protein receptor type 1B (BMPR1B) gene increases ovulation in sheep. However, its effect on follicular maturation is not fully understood. Therefore, we collected granulosa cells (GCs) at a critical stage of follicle [...] Read more.
The Booroola fecundity (FecB) mutation in the bone morphogenetic protein receptor type 1B (BMPR1B) gene increases ovulation in sheep. However, its effect on follicular maturation is not fully understood. Therefore, we collected granulosa cells (GCs) at a critical stage of follicle maturation from nine wild-type (WW), nine heterozygous FecB mutant (WB), and nine homozygous FecB mutant (BB) Small Tail Han sheep. The GCs of three ewes were selected at random from each genotype and consolidated into a single group, yielding a total of nine groups (three groups per genotype) for proteomic analysis. The tandem mass tag technique was utilized to ascertain the specific proteins linked to multiple ovulation in the various FecB genotypes. Using a general linear model, we identified 199 proteins significantly affected by the FecB mutation with the LIMMA package (p < 0.05). The differential abundance of proteins was enriched in pathways related to cholesterol metabolism, carbohydrate metabolism, amino acid biosynthesis, and glutathione metabolism. These pathways are involved in important processes for GC-regulated ‘conservation’ of oocyte maturation. Further, the sparse partial least-squares discriminant analysis and the Fuzzy-C-mean clustering method were combined to estimate weights and cluster differential abundance proteins according to ovulation to screen important ovulation-related proteins. Among them, ZP2 and ZP3 were found to be enriched in the cellular component catalog term “egg coat”, as well as some apolipoproteins, such as APOA1, APOA2, and APOA4, enriched in several Gene Ontology terms related to cholesterol metabolism and lipoprotein transport. A higher abundance of these essential proteins for oocyte maturation was observed in BB and WB genotypes compared with WW ewes. These proteins had a high weight in the model for discriminating sheep with different FecB genotypes. These findings provide new insight that the FecB mutant in GCs improves nutrient metabolism, leading to better oocyte maturation by altering the abundance of important proteins (ZP2, ZP3, and APOA1) in favor of increased ovulation or better oocyte quality. Full article
(This article belongs to the Section Animal Reproduction)
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Figure 1

Figure 1
<p>Description of the process of collecting granular cells and conducting TMT proteome analysis. A total of 27 ewes, divided into three groups based on their <span class="html-italic">FecB</span> genotype (9 <span class="html-italic">WW</span>, 9 <span class="html-italic">WB</span>, and 9 <span class="html-italic">BB</span>), were subjected to controlled internal drug release (CIDR) to synchronize estrus. Cumulus-oocyte complexes (COCs) were obtained from follicles larger than 3 mm in diameter, 45 h after CIDR removal on day 12. Following the extraction of cumulus granulosa cells, proteins were isolated and randomly distributed into three groups for TMT labeling.</p>
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<p>Illustration of the comparison of protein abundance profiles obtained through the employment of PRM and TMT protein quantification techniques. In the comparison of <span class="html-italic">BB</span> ewes with <span class="html-italic">WW</span> ewes (<span class="html-italic">BB</span> vs. <span class="html-italic">WW</span>), <span class="html-italic">BB</span> ewes with <span class="html-italic">WB</span> ewes (<span class="html-italic">BB</span> vs. <span class="html-italic">WB</span>), and <span class="html-italic">WB</span> ewes with <span class="html-italic">WW</span> ewes (<span class="html-italic">WB</span> vs. <span class="html-italic">WW</span>) groups, the following proteins were chosen for validation of their abundance: alpha 2-HS-glycoprotein (AHSG), glutamate dehydrogenase (GLUD1), tubulin beta chain (TUBB), glucosidase II alpha subunit (GANAB), SUN domain-containing protein (SUN2), and thioredoxin domain containing 5 (TXNDC5). The log2(Ratio) values were computed for the compared genotypes. The protein abundance, as determined by the PRM method in comparison to the TMT method, exhibited a consistent pattern for the selected genes across all three groups.</p>
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<p>The volcano plots and Venn plots depict the differentially abundant proteins (DAPs). The threshold for identifying upregulated and downregulated DAPs was set at a fold change &gt; 1.2 or &lt;0.83, with a <span class="html-italic">p</span> value &lt; 0.05. The separate analysis of DAPs was performed for the (<b>A</b>) comparison between <span class="html-italic">BB</span> ewes and <span class="html-italic">WW</span> ewes (<span class="html-italic">WW</span> vs. <span class="html-italic">BB</span>), (<b>B</b>) comparison between <span class="html-italic">BB</span> ewes and <span class="html-italic">WB</span> ewes (<span class="html-italic">BB</span> vs. <span class="html-italic">WB</span>), and (<b>C</b>) comparison between <span class="html-italic">WB</span> ewes and <span class="html-italic">WW</span> ewes (<span class="html-italic">WB</span> vs. <span class="html-italic">WW</span>) groups. Additionally, the Venn plot in (<b>D</b>) illustrates the overlap of DAPs between the <span class="html-italic">BB</span> vs. <span class="html-italic">WW</span>, <span class="html-italic">BB</span> vs. <span class="html-italic">WB</span>, and <span class="html-italic">WB</span> vs. <span class="html-italic">WW</span> groups.</p>
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<p>The top 30 enriched KEGG pathways and top 30 Gene Ontology (GO) terms in each category of differentially abundant proteins (DAPs) were obtained through the genotype-based factorial model. (<b>A</b>) KEGG enrichment pathways for DAPs. (<b>B</b>) GO terms in each category for DAPs.</p>
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<p>Demonstration of the application of sparse partial least-squares discriminant analysis (sPLSDA) combined with the examination of differentially abundant proteins (DAPs) acquired using a genotype-based factorial model. By employing the sPLSDA method, the impact of mutations on protein abundance was predicted, and the weights of these proteins in various genotypes were calculated. Consequently, a screening process was conducted to identify biomarkers affected by FecB mutations, resulting in the identification of two components. (<b>A</b>) The screened proteins exhibited a notable ability to differentiate samples with distinct genotypes. (<b>B</b>) The Receiver Operating Characteristic Area under the Curve (ROC AUC) yields separate results of 1.00 when utilizing proteins from the two components within the predictive model. (<b>C</b>,<b>D</b>) The visualization showcases proteins with higher weights in the two components of the model. The bars represent the absolute values of the calculated loading vector weights. The varying colors indicate the level of association between each biomarker and the genotype. <span class="html-italic">BB</span> refers to sheep with the <span class="html-italic">BB</span> genotype, <span class="html-italic">WB</span> refers to sheep with the <span class="html-italic">WB</span> genotype, and <span class="html-italic">WW</span> refers to sheep with the <span class="html-italic">WW</span> genotype.</p>
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<p>The clustering diagram of differentially abundant proteins (DAPs) and the protein-protein interaction network of the proteins in cluster 6. (<b>A</b>) The clustering diagram of DAPs was obtained using the genotype-based factorial model and the fuzzy c-means clustering algorithm. (<b>B</b>) The interaction network of the proteins in cluster 6 was constructed using the STRING database. The edges in the network represent both functional and physical protein associations, with the thickness of the confidence lines indicating the strength of data support.</p>
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