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8 pages, 563 KiB  
Communication
Prevalence of Four Nematode Species (Mermithidae) in Adult Mosquitoes (Diptera: Culicidae): First Comments Since Infection/Parasitism in Fourth-Instar Larvae
by Rafael Pérez-Pacheco, Edward G. Platzer, Carlos Granados-Echegoyen, Sabino H. Martinez-Tomas, Baldomero H. Zárate-Nicolás, Beatriz Quiroz-González, Henry Loeza-Concha, Jorge Tucuch-Haas, Alicia Fonseca-Muñoz and Fabián Arroyo-Balán
Microorganisms 2024, 12(12), 2388; https://doi.org/10.3390/microorganisms12122388 - 21 Nov 2024
Abstract
We examined the infective capacity of the mermithid nematodes, Romanomermis iyengari, Romanomermis culicivorax, Romanomermis wuchangensis, and Strelkovimermis spiculatus in fourth-instar mosquito larvae nearing pupation of Aedes aegypti, Aedes sierrensis, and Culex pipiens to determine their prevalence in the [...] Read more.
We examined the infective capacity of the mermithid nematodes, Romanomermis iyengari, Romanomermis culicivorax, Romanomermis wuchangensis, and Strelkovimermis spiculatus in fourth-instar mosquito larvae nearing pupation of Aedes aegypti, Aedes sierrensis, and Culex pipiens to determine their prevalence in the adults of these mosquitoes. We exposed 100 fourth-instar larvae to pre-parasitic nematodes (juvenile 2 stages) at a ratio of 10:1 (10 nematodes per mosquito larvae). Two days after the nematode applications, a sample of 20 pupae was taken and placed into transparent plastic cups with distilled water to observe the development and growth of pupae until they reached the adult phase with nematodes inside. The four species of nematodes showed the highest prevalence of infection on the Cx. pipiens mosquito, exceeding 55% parasitism, while R. wuchangensis and R. iyengari surpassed this value on Ae. sierrensis by 61.11% and 57.89%. Aedes aegypti was the least susceptible to nematodes, with parasitism values between 30% and 40%. In laboratory settings, we obtained high rates (26.32–77.78%) of parasitized adults when the three-mosquito species in fourth-instar larvae nearing pupation were exposed to infective nematodes. R. wuchangensis (1.86) and S. spiculatus (1.80) were infected Cx. pipiens with greater intensity and R. iyengari (1.33) and R. culicivorax (1.09) with less intensity. This evaluation offers valuable insights into the variability of nematode prevalence of infection and infectivity in fourth-instar larvae, which host mermithids capable of progressing through the pupal stage to adulthood. Full article
(This article belongs to the Section Public Health Microbiology)
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<p><span class="html-italic">Culex pipiens</span> adult mosquito with a distended, abdomen from emerging the parasitic mermithids nematode <span class="html-italic">R. wuchangensis</span>.</p>
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20 pages, 1650 KiB  
Article
Ochratoxin A Degradation and Stress Response Mechanism of Brevundimonas naejangsanensis ML17 Determined by Transcriptomic Analysis
by Zitong Zhao, Zehui Niu and Zhihong Liang
Foods 2024, 13(23), 3732; https://doi.org/10.3390/foods13233732 - 21 Nov 2024
Abstract
Ochratoxin A (OTA) is a naturally occurring mycotoxin mainly produced by certain species of Aspergillus and Penicillium and is a serious threat to human health and food safety. Previous studies showed that Brevundimonas naejangsanensis ML17 can completely degrade 1 μg/mL of OTA. The [...] Read more.
Ochratoxin A (OTA) is a naturally occurring mycotoxin mainly produced by certain species of Aspergillus and Penicillium and is a serious threat to human health and food safety. Previous studies showed that Brevundimonas naejangsanensis ML17 can completely degrade 1 μg/mL of OTA. The aim of this study was to investigate the degradation effect of ML17 at different concentrations of OTA, and specifically, to investigate the mechanism of OTA degradation by ML17. The growth of ML17 was not affected by exposure to 6 μg/mL OTA within 24 h. ML17 could almost completely degrade 12 μg/mL of OTA within 36 h, converting it into the non-toxic OTα and L-phenylalanine. Transcriptomic analysis showed that 275 genes were upregulated, whereas three genes were downregulated in ML17 under the stress of 1 μg/mL OTA. Functional enrichment analysis showed that exposure to OTA enhanced translation, amide and peptide biosynthesis and metabolism, promoted oxidative phosphorylation, and increased ATP production. Further analysis revealed that, when exposed to OTA, ML17 exerted a stress-protective effect by synthesizing large amounts of heat shock proteins, which contributed to the correct folding of proteins. Notably, genes related to antioxidant activity, such as peroxiredoxin, superoxide dismutase, and glutaredoxin 3, were significantly upregulated, indicating that ML17 can resist the toxic effects of OTA through adjusting its metabolic processes, and the enzyme-coding gene0095, having OTA degradation activity, was found to be upregulated. This suggests that ML17 can achieve OTA degradation by regulating its metabolism, upregulating its antioxidant system, and upregulating enzyme-encoding genes with OTA degradation activity. Our work provides a theoretical reference for clarifying the mechanism of OTA degradation by ML17. Full article
(This article belongs to the Section Food Toxicology)
12 pages, 8106 KiB  
Article
Spatial and Temporal Diversity of Fishes at Wuzhizhou Island in the South China Sea Based on Environmental DNA
by Ting Jiang, Kun Cao, Xin Wang, Rui Xi, Chongzhao Wang, Rui Yang, Wei Yang, Zhenhua Ma and Yingchun Xing
Diversity 2024, 16(12), 712; https://doi.org/10.3390/d16120712 - 21 Nov 2024
Abstract
Wuzhizhou Island (WZZ) is one of the most mature tourism islands on the coast of the South China Sea, and its surrounding waters are rich in tropical coral reef fishes. Tourism could affect marine biodiversity, especially the coral reef fish community. In order [...] Read more.
Wuzhizhou Island (WZZ) is one of the most mature tourism islands on the coast of the South China Sea, and its surrounding waters are rich in tropical coral reef fishes. Tourism could affect marine biodiversity, especially the coral reef fish community. In order to understand the species diversity of fish surrounding WZZ, environmental DNA (eDNA) samples were collected from six sampling sites around the island, located in the core and non-core tourism areas, respectively, from 2022 to 2023. In total, 188 fish species, belonging to 124 genera, 63 families and 17 orders, were detected using eDNA method. The Perciformes contained the highest number of species (n = 130, 69.15% of total number). Compared to traditional fishing nets, eDNA could provide more information on fish species. The results indicated that species richness and Margalef’s index were higher at the sampling sites in the core area of tourism of WZZ, which maybe relevant to tourism-based provisioning. By contrast, the Shannon–Wiener index, Pielou’s index and dominant species of fish did not display significant differences between core and non-core tourism areas. On the basis of the results of the β-diversity index, the differences in fish communities had a closer relationship to geographical location. Furthermore, there were obvious differences in fish communities in different seasons, which may be attributed to the influence of ocean currents. Full article
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<p>(<b>a</b>) Locality of sampling sites around WZZ; (<b>b</b>) habitat photographs of each sampling site.</p>
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<p>The order composition of fish at WZZ.</p>
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<p>The family composition of fish at WZZ.</p>
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<p>The genus composition of fish at WZZ.</p>
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<p>Comparison of fish species richness at each sampling site of WZZ.</p>
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<p>Analysis of relative eDNA abundance of fish species at each sampling site of WZZ.</p>
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<p>PCoA of fish communities among different seasons (A: summer; B: winter; C: autumn).</p>
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16 pages, 608 KiB  
Article
PA-Win2: In Silico-Based Discovery of a Novel Peptide with Dual Antibacterial and Anti-Biofilm Activity
by Jin Wook Oh, Min Kyoung Shin, Hye-Ran Park, Sejun Kim, Byungjo Lee, Jung Sun Yoo, Won-Jae Chi and Jung-Suk Sung
Antibiotics 2024, 13(12), 1113; https://doi.org/10.3390/antibiotics13121113 - 21 Nov 2024
Abstract
Background: The emergence and prevalence of antibiotic-resistant bacteria (ARBs) have become a serious global threat, as the morbidity and mortality associated with ARB infections are continuously rising. The activation of quorum sensing (QS) genes can promote biofilm formation, which contributes to the acquisition [...] Read more.
Background: The emergence and prevalence of antibiotic-resistant bacteria (ARBs) have become a serious global threat, as the morbidity and mortality associated with ARB infections are continuously rising. The activation of quorum sensing (QS) genes can promote biofilm formation, which contributes to the acquisition of drug resistance and increases virulence. Therefore, there is an urgent need to develop new antimicrobial agents to control ARB and prevent further development. Antimicrobial peptides (AMPs) are naturally occurring defense molecules in organisms known to suppress pathogens through a broad range of antimicrobial mechanisms. Methods: In this study, we utilized a previously developed deep-learning model to identify AMP candidates from the venom gland transcriptome of the spider Pardosa astrigera, followed by experimental validation. Results: PA-Win2 was among the top-scoring predicted peptides and was selected based on physiochemical features. Subsequent experimental validation demonstrated that PA-Win2 inhibits the growth of Bacillus subtilis, Escherichia coli, Staphylococcus aureus, Staphylococcus epidermidis, Pseudomonas aeruginosa, and multidrug-resistant P. aeruginosa (MRPA) strain CCARM 2095. The peptide exhibited strong bactericidal activity against P. aeruginosa, and MRPA CCARM 2095 through the depolarization of bacterial cytoplasmic membranes and alteration of gene expression associated with bacterial survival. In addition, PA-Win2 effectively inhibited biofilm formation and degraded pre-formed biofilms of P. aeruginosa. The gene expression study showed that the peptide treatment led to the downregulation of QS genes in the Las, Pqs, and Rhl systems. Conclustions: These findings suggest PA-Win2 as a promising drug candidate against ARB and demonstrate the potential of in silico methods in discovering functional peptides from biological data. Full article
(This article belongs to the Special Issue Antimicrobial Activity of Bioactive Peptides and Their Derivatives)
22 pages, 1007 KiB  
Review
Interactions Between Forest Cover and Watershed Hydrology: A Conceptual Meta-Analysis
by Mathurin François, Terencio Rebello de Aguiar Junior, Marcelo Schramm Mielke, Alain N. Rousseau, Deborah Faria and Eduardo Mariano-Neto
Water 2024, 16(23), 3350; https://doi.org/10.3390/w16233350 - 21 Nov 2024
Abstract
The role of trees in watershed hydrology is governed by many environmental factors along with their inherent characteristics and not surprisingly has generated diverse debates in the literature. Herein, this conceptual meta-analysis provides an opportunity to propose a conceptual model for understanding the [...] Read more.
The role of trees in watershed hydrology is governed by many environmental factors along with their inherent characteristics and not surprisingly has generated diverse debates in the literature. Herein, this conceptual meta-analysis provides an opportunity to propose a conceptual model for understanding the role of trees in watershed hydrology and examine the conditions under which they can be an element that increases or decreases water supply in a watershed. To achieve this goal, this conceptual meta-analysis addressed the interaction of forest cover with climatic conditions, soil types, infiltration, siltation and erosion, water availability, and the diversity of ecological features. The novelty of the proposed conceptual model highlights that tree species and densities, climate, precipitation, type of aquifer, and topography are important factors affecting the relationships between trees and water availability. This suggests that forests can be used as a nature-based solution for conserving and managing natural resources, including water, soil, and air. To sum up, forests can reduce people’s footprint, thanks to their role in improving water and air quality, conserving soil, and other ecosystem services. The outcomes of this study should be valuable for decision-makers in understanding the types of forests that can be used in an area, following an approach of environmental sustainability and conservation aiming at restoring hydrological services, mitigating the costs of environmental services, promoting sustainable land use, managing water resources, and preserving and restoring soil water availability (SWA) when investing in reforestation for watershed hydrology, which is important for the human population and other activities. Full article
(This article belongs to the Special Issue Soil Dynamics and Water Resource Management)
17 pages, 1064 KiB  
Article
Effective Control of Neofusicoccum parvum in Grapevines: Combining Trichoderma spp. with Chemical Fungicides
by Aranzazu Gomez-Garay, Sergio Astudillo Calderón, Mª Luisa Tello Mariscal and Beatriz Pintos López
Agronomy 2024, 14(12), 2766; https://doi.org/10.3390/agronomy14122766 - 21 Nov 2024
Abstract
Vitis vinifera is highly susceptible to grapevine trunk diseases, with Neofusicoccum parvum recognized as a highly destructive pathogen. This study investigates the biocontrol potential of five Trichoderma species (T. harzianum, T. viride, T. asperellum, and T. virens) against [...] Read more.
Vitis vinifera is highly susceptible to grapevine trunk diseases, with Neofusicoccum parvum recognized as a highly destructive pathogen. This study investigates the biocontrol potential of five Trichoderma species (T. harzianum, T. viride, T. asperellum, and T. virens) against N. parvum, evaluating multiple biocontrol mechanisms (mycoparasitism, competition for nutrients, production of volatile organic compounds (VOCs), and antibiosis) as well as their compatibility with the fungicides copper oxychloride and sulfur. Results demonstrated that (1) Trichoderma harzianum effectively suppressed N. parvum through VOC production, mycoparasitism, and nutrient competition, significantly reducing pathogen growth in planta while showing compatibility with both fungicides, highlighting its suitability for integrated disease management; (2) Trichoderma viride showed high inhibition of N. parvum in vitro, but its phytotoxicity in planta limits its field application. These findings support T. harzianum as a promising agent within integrated disease management strategies, offering a sustainable alternative to reduce chemical fungicide reliance in controlling grapevine trunk pathogens. Full article
16 pages, 830 KiB  
Article
Volatile Distribution in Flowers of Lathyrus odoratus L. by HS-SPME-GC Technique and Enantiomeric Separation Data
by James Calva, Mayerly Parra and Ángel Benítez
Plants 2024, 13(23), 3272; https://doi.org/10.3390/plants13233272 - 21 Nov 2024
Abstract
Lathyrus odoratus L., commonly known as sweet pea, is a plant with a distinctive aroma that can develop in various habitats. An analysis of the aromatic profile of the species was conducted using the HS-SPME (solid-phase microextraction headspace) technique. This study aimed to [...] Read more.
Lathyrus odoratus L., commonly known as sweet pea, is a plant with a distinctive aroma that can develop in various habitats. An analysis of the aromatic profile of the species was conducted using the HS-SPME (solid-phase microextraction headspace) technique. This study aimed to explore the composition of and variation in the floral scent emissions of L. odorathus. The floral scents from fresh flowers were collected over different months and analyzed using gas chromatography coupled with mass spectrometry on apolar and polar stationary phase columns. In the apolar column, the majority compounds included linalool (19.27–5.79%), α-trans-bergamotene (29.4–14.21%), and phenyl ethyl alcohol (30.01–1.56%), while on the polar column, the predominant compounds included myrcene (13.25%), (E,E)-α-farnesene (26.33–8.16%), α-trans-bergamotene (42.09–24.82%), and others. This investigation was complemented by enantioselective analysis using a chiral phase based in cyclodextrins, which revealed the presence of (1R)-(+)-α-pinene, (S)-(−)-limonene, (R)-(+)-germacrene D, and (R)-(E)-nerolidol as enantiomerically pure components and linalool as a racemic mixture. Notably, the principal component analysis (PCA) and heatmap revealed variations among the chemical compounds collected at different harvest times. This demonstrates that temporal factors indeed impact chemical compound production. Furthermore, research on the aromatic properties of flowers provides a theoretical basis for studying and improving the components of their scent. Full article
13 pages, 974 KiB  
Review
The Applications of Plant Polyphenols: Implications for the Development and Biotechnological Utilization of Ilex Species
by Gong Cheng, Yuxiao Yan, Bingsong Zheng and Daoliang Yan
Plants 2024, 13(23), 3271; https://doi.org/10.3390/plants13233271 - 21 Nov 2024
Abstract
Plants belonging to the Ilex species are distinguished by their rich composition of diverse phenolic compounds and various bioactive substances, which demonstrate dual functionalities in therapeutic applications and health promotion. In recent years, these plants have garnered significant interest among researchers. While the [...] Read more.
Plants belonging to the Ilex species are distinguished by their rich composition of diverse phenolic compounds and various bioactive substances, which demonstrate dual functionalities in therapeutic applications and health promotion. In recent years, these plants have garnered significant interest among researchers. While the application scope of plant polyphenols (PPs) is extensive, the exploration and utilization of holly polyphenols (HPs) remain comparatively underexplored. This article reviews the research advancements regarding the predominant phenolic compounds present in commonly studied Ilex species over the past five years and summarizes the application studies of PPs across various domains, including pharmacological applications, food technology, health supplements, and cosmetic formulations. The objective of this review is to provide insights into the systematic research and development of HPs, offering references and recommendations to enhance their value. Full article
(This article belongs to the Special Issue Biological Activities of Plant Extracts 2nd Edition)
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<p>Current status of PP development and utilization. The blue section indicates applications in the field of medicine. The green section indicates applications in the field of beauty industry. The yellow section indicates applications in the field of breeding industry. The gray section indicates applications in the field of food science.</p>
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<p>Methods to enhance the quality, yield, and utilization rate of HPs. The blue section indicates the use of plant growth regulators. The yellow section represents improvements in extraction techniques. The gray section denotes alterations in light conditions. The orange section reflects enhancements in soil quality. The green section signifies the application of solution treatments. The brownish-yellow section indicates the utilization of microencapsulation technology.</p>
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17 pages, 2768 KiB  
Article
The Antioxidant Profile of Some Species of Microgreens Cultivated on Hemp and Coconut Substrate Under the Action of a Biostimulator Based on Humic Acids
by Alina Elena Marta, Florina Stoica, Ștefănica Ostaci and Carmenica Doina Jităreanu
Horticulturae 2024, 10(12), 1238; https://doi.org/10.3390/horticulturae10121238 - 21 Nov 2024
Abstract
Microplants are vegetables, grains and aromatic herbs that are consumed in the stage of young plants, without roots, developed after the germination stage, in the stage of cotyledons and which have a high content of nutrients (antioxidants, vitamins, minerals, fatty acids, lutein, β-carotene, [...] Read more.
Microplants are vegetables, grains and aromatic herbs that are consumed in the stage of young plants, without roots, developed after the germination stage, in the stage of cotyledons and which have a high content of nutrients (antioxidants, vitamins, minerals, fatty acids, lutein, β-carotene, proteins and fibers, etc.), which makes them functional, concentrated foods capable of feeding the world’s ever-growing population. The significant amounts of antioxidants in microgreens have the role of neutralizing free radicals and reducing their harmful impact on human health. The microgreens studied were spinach (Spinacia oleracea) cultivar ‘Lorelay’, mustard (Sinapis alba) cultivar ‘White’ and radish (Raphanus sativus) cultivar ‘Red Rambo’, tested on hemp and coconut substrates and under the influence of the organic biostimulator Biohumussol, based on humic acids. The antioxidant content of the plants was determined by analyzing total carotenoids, lycopene, chlorophyll, β-carotene, polyphenols and flavonoids, as well as the antioxidant activity by ABTS and DPPH methods. The obtained results indicated that the reaction of the plant material depends on the composition of the substrate and the presence of the applied biostimulator. The highest contents of substances with an antioxidant role were obtained from the microgreens on the hemp substrate, especially mustard and radishes, and the biostimulator proved to be compatible with the spinach microgreens. Full article
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<p>Analysis of mustard, radish and spinach microgreens grown on hemp substrate and coconut substrate under the influence of Biohumussol biostimulator for (<b>a</b>) total carotenoid content (mg/100 g DW); (<b>b</b>) lycopene content (mg/100 g DW); (<b>c</b>) β-carotene content (mg/100 g DW) and (<b>d</b>) total content of chlorophyll pigments (mg/100 g DW). Error bars on the graphs represent the standard deviation, and letters on the graph were placed according to Tukey’s test with a significance level of 0.05. The raw data can be found in <a href="#app1-horticulturae-10-01238" class="html-app">Table S1</a> of the <a href="#app1-horticulturae-10-01238" class="html-app">Supplementary Information</a>. For each analysis, five replicates were performed (<span class="html-italic">n</span> = 5).</p>
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<p>Analysis of mustard, radish and spinach microgreens grown on hemp substrate and coconut substrate under the influence of Biohumussol biostimulator for (<b>a</b>) total polyphenol content (mg GAE/g DW) and (<b>b</b>) total flavonoid content (mg EC/g DW). Error bars on the graphs represent the standard deviation, and letters on the graph were placed according to Tukey’s test, with a significance level of 0.05. The raw data can be found in <a href="#app1-horticulturae-10-01238" class="html-app">Table S1 of the Supplementary Information</a>. For each analysis, five replicates were performed (<span class="html-italic">n</span> = 5).</p>
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<p>Analysis of mustard, radish and spinach microgreens grown on hemp substrate and coconut substrate under the influence of Biohumussol biostimulator for (<b>a</b>) antioxidant activity by the DPPH method (µmol TE/g DW) and (<b>b</b>) antioxidant activity by the ABTS method (µmol Trolox/g DW). Error bars on the graphs represent the standard deviation, and letters on the graph were placed according to Tukey’s test, with a significance level of 0.05. The raw data can be found in <a href="#app1-horticulturae-10-01238" class="html-app">Table S1 of the Supplementary Information</a>. For each analysis, five replicates were performed (<span class="html-italic">n</span> = 5).</p>
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<p>Graphic representation of Student’s <span class="html-italic">t</span>-tests performed for mustard (<b>a</b>), radish (<b>b</b>) and spinach (<b>c</b>). NS—<span class="html-italic">p</span> &gt; 0.05; *—<span class="html-italic">p</span> &lt; 0.05; **—<span class="html-italic">p</span> &lt; 0.01; ***—<span class="html-italic">p</span> &lt; 0.005; ****—<span class="html-italic">p</span> &lt; 0.001. The graphic representation was made with the help of a heat map. Specific notations explained in the text were made to create the heat map. The results of the performed <span class="html-italic">t</span>-tests can be found in <a href="#app1-horticulturae-10-01238" class="html-app">Table S2 of the Supplementary Information</a>.</p>
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<p>Analysis of mustard, radish and spinach microgreens grown on hemp substrate and coconut substrate under the influence of Biohumussol biostimulator for (<b>a</b>) height measured in cm and (<b>b</b>) weight measured in g. Error bars represent standard deviation, and letters are assigned using Tukey’s 0.05 significance level test. Averages of 10 analyses (<span class="html-italic">n</span> = 20) were performed, and values are in <a href="#app1-horticulturae-10-01238" class="html-app">Supplementary Information Tables S3 and S4</a>.</p>
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<p>Pearson correlation matrix between the total carotenoid content and the total chlorophyll content for the three species of microgreens tested grown on the two substrates (hemp and coconut) under the action of the Biohumussol biostimulator. The notations present on the matrix are formed as follows: Initial of the species: mustard (M), radish (R) and spinach (S); C—Hemp, CO—Coconut, to which the letters N—Untreated and B—Biohumussol were added, depending on whether or not the treatment was applied. The last letters were C—Total Carotenoids or Cl—Total Chlorophyll.</p>
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14 pages, 2174 KiB  
Article
The Impact of Structural Indicators and Game Browsing on the Natural Regeneration of Forest–Steppe Ecosystems Dominated by Deciduous Oak Species—A Case Study from the Krupina Plateau, Slovakia
by Zuzana Parobeková, Denisa Sedmáková, Ján Pittner, Ivana Sarvašová and Ivan Lukáčik
Forests 2024, 15(12), 2057; https://doi.org/10.3390/f15122057 - 21 Nov 2024
Abstract
Forest–steppe ecosystems represent a heterogeneous small-patch landscape important as a biodiversity hotspot and habitat for many endangered species. In this work, we examine threatened forest–steppe communities using structural indices, browsing intensity and indices that consider herbivorous game preferences. The study aims to assess [...] Read more.
Forest–steppe ecosystems represent a heterogeneous small-patch landscape important as a biodiversity hotspot and habitat for many endangered species. In this work, we examine threatened forest–steppe communities using structural indices, browsing intensity and indices that consider herbivorous game preferences. The study aims to assess the abundance of natural regeneration and the browsing intensity in relation to different stand structures and to identify woody species threatened by selective browsing at three study sites on the Krupina Plateau in the southern part of central Slovakia. At each study site, three circular permanent research plots (PRPs), each 500 m2 in size, were established for stand structure analysis. Within each PRP, nine circular subplots with a radius of 2 m were established for detailed analysis of natural regeneration. The results of this study suggest that forest patches in the forest–steppe mosaic suffer from a long-term lack of natural regeneration, which is induced mainly by increasing aridity and ungulate pressure. Positive effects on the amount of natural regeneration were noted in association with the aggregated structure of forest patches and the presence of dead wood. Differentiated stand structure influenced the regeneration number in a negative way and at the same time significantly increased browsing intensity. In relation to a more advanced regeneration, shrubs had a protective effect against browsing. The feeding preferences of the animals can positively modulate the species composition and eliminate the imbalances in the regeneration in favor of the increasingly rare Quercus pubescens Willd. Full article
(This article belongs to the Section Forest Ecology and Management)
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<p>Study site location within Slovakia and surrounding countries.</p>
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<p>Climatic characteristics of study sites and their average annual course.</p>
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<p>Basal area and diameter distributions for study sites (MED—Medovarce; PLA—Plášťovce; DRI—Drienovo) according to classes of diameter at breast height and tree species.</p>
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<p>Number and composition of natural regeneration on study sites according to height categories (MED—Medovarce; PLA—Plášťovce; DRI—Drienovo).</p>
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19 pages, 682 KiB  
Article
A Novel Normalized Quantitative Real-Time PCR Approach for Ensuring Roe Deer (Capreolus capreolus) Meat Authenticity in Game Meat Foods
by Bukola M. Adenuga, Rita Biltes, Caterina Villa, Joana Costa, Anita Spychaj, Magdalena Montowska and Isabel Mafra
Foods 2024, 13(23), 3728; https://doi.org/10.3390/foods13233728 - 21 Nov 2024
Abstract
Roe deer meat is a prized game product in many European countries. However, concerns exist regarding the accuracy of the amount of declared roe deer in processed game meat foods. This study aimed to develop a reliable method for the detection and quantification [...] Read more.
Roe deer meat is a prized game product in many European countries. However, concerns exist regarding the accuracy of the amount of declared roe deer in processed game meat foods. This study aimed to develop a reliable method for the detection and quantification of roe deer in commercialized game meat products. A TaqMan probe-based quantitative real-time PCR (qPCR) assay was designed, targeting a single-copy 120-bp region of the roe deer agouti signaling protein (ASIP) encoding gene. The method employed the normalized ∆Cq approach to establish a calibration curve for roe deer detection and quantification within 0.05–50% (w/w) in complex raw and processed matrices. The method proved to be specific for roe deer identification, achieving limits of detection and quantification of 0.04 ng of roe deer DNA and 0.05% (w/w) of roe deer in simulated pâté. Following validation with blind samples, highlighting the precision and trueness of the approach, the assay was applied to 46 market samples from four European origins (Poland, Portugal, France, and Spain). The analysis revealed significant discrepancies between declared roe deer content and actual levels in all roe deer labeled products. The global analysis of results, combining the previous survey on red deer species with present roe deer data, identified 61% of mislabeled/adulterated samples due to the absence of deer species, substitution of roe deer with red deer, substitution of fallow deer with other deer species and red deer with pork, and undeclared addition of roe deer. This study demonstrates the effectiveness of the developed qPCR method for accurate roe deer meat authentication in foods, showing its usefulness as a tool for routine food inspection to ensure labeling compliance. Full article
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13 pages, 1775 KiB  
Article
Convergent Evolution of Armor: Thermal Resistance in Deep-Sea Hydrothermal Vent Crustaceans
by Boongho Cho, Sook-Jin Jang, Hee-seung Hwang and Taewon Kim
Biology 2024, 13(12), 956; https://doi.org/10.3390/biology13120956 - 21 Nov 2024
Abstract
Organisms occupy diverse ecological niches worldwide, each with characteristics finely evolved for their environments. Crustaceans residing in deep-sea hydrothermal vents, recognized as one of Earth’s extreme environments, may have adapted to withstand severe conditions, including elevated temperatures and pressure. This study compares the [...] Read more.
Organisms occupy diverse ecological niches worldwide, each with characteristics finely evolved for their environments. Crustaceans residing in deep-sea hydrothermal vents, recognized as one of Earth’s extreme environments, may have adapted to withstand severe conditions, including elevated temperatures and pressure. This study compares the exoskeletons of two vent crustaceans (bythograeid crab Austinograea sp. and squat lobster Munidopsis lauensis) with four coastal species (Asian paddle crabs, blue crab, hermit crab, and mantis shrimp) to identify traits influenced by vent environments. The goal was to identify distinctive exoskeletal characteristics commonly observed in vent crustaceans, resulting from their exposure to severe abiotic factors, including elevated temperatures and pressures, found in vent environments. Results show that the exoskeletons of vent crustaceans demonstrated significantly enhanced thermal stability compared to coastal species. These vent crustaceans consistently featured exoskeletons characterized by a reduced proportion of volatile components, such as water, and an increased proportion of CaCO3, compared with coastal crustaceans. Furthermore, vent crustaceans lacked carotenoid pigments that had low heat resistance. However, no apparent differences were observed in the mechanical properties. Our findings suggest that the similar composition of exoskeletons in vent crustaceans evolved convergently to withstand high temperatures. Full article
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<p>Research was conducted on species (<b>a</b>), sampling sites (<b>b</b>), and phylogenetic relationships (<b>c</b>). The phylogenetic relationship was estimated using two specimens of each species based on BI and ML analysis using the combined data set (2101 bp) of <span class="html-italic">mtCOI</span>, <span class="html-italic">mt16S rRNA</span>, <span class="html-italic">18S rRNA</span>, and <span class="html-italic">H3</span> genes. The number at each node represents the bootstrap values from ML analysis, and the posterior probabilities from BI. The scale bar indicates phylogenetic distance of 0.03 nucleotide substitutions per site.</p>
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<p>Mechanical properties and thickness ratio of each layer of the exoskeleton. (<b>a</b>) hardness, (<b>b</b>) reduced modulus, and (<b>c</b>) thickness ratio; mean ± SE; the significant difference is indicated by an asterisk (*).</p>
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<p>Crustacean exoskeleton (endocuticle layer) compound analysis graph through Raman analysis.</p>
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<p>Thermal stability analysis results. (<b>a</b>) TGA curve of crustaceans and each combusting substance on each range. Weight loss (%) for each temperature range: (<b>b</b>) Range 1, Range 2, and Range 3; mean ± SE; the significant difference is indicated by an asterisk (*).</p>
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14 pages, 1132 KiB  
Perspective
Noninvasive Ultra Low Intensity Light Photodynamic Treatment of Glioblastoma with Drug Augmentation: LoGlo PDT Regimen
by Richard E. Kast, Anton P. Kast, Jürgen Arnhold, Felix Capanni, Laura N. Milla Sanabria, Nicolas Bader, Bruno Marques Vieira, Alex Alfieri, Georg Karpel-Massler and Erasmo Barros da Silva
Brain Sci. 2024, 14(12), 1164; https://doi.org/10.3390/brainsci14121164 - 21 Nov 2024
Abstract
This paper presents the basis for LoGlo PDT, a new treatment for glioblastoma. Glioblastoma is currently treated with maximal safe resection, temozolomide, and ionizing irradiation. Mortality in 2024 remains over 80% within several years from diagnosis. Oral 5-aminolevulinic acid (5-ALA) is an FDA/EMA [...] Read more.
This paper presents the basis for LoGlo PDT, a new treatment for glioblastoma. Glioblastoma is currently treated with maximal safe resection, temozolomide, and ionizing irradiation. Mortality in 2024 remains over 80% within several years from diagnosis. Oral 5-aminolevulinic acid (5-ALA) is an FDA/EMA approved drug that is selectively taken up by malignant cells, including by glioblastoma. In photodynamic treatment of glioblastoma, intense intraoperative light causes glioblastoma tissue that has taken up 5-ALA to generate cytotoxic reactive oxygen species. The requirement for intense light flux has restricted photodynamic treatment to a single one-hour intraoperative session. We analyze here published data showing that external light, illuminating the entire intact scalp, can attain low μW/cm2 flux several cm into intact brain that would be sufficient to mediate 5-ALA photodynamic treatment of glioblastoma if the light and 5-ALA are delivered continuously over 24 h. At the core of LoGlo PDT regimen is the dataset showing that, for a given fluence, as the duration of PDT light delivery goes down, light intensity (flux) delivered must go up to achieve the same glioblastoma cell cytotoxicity as would a weaker light (lower flux) delivered over a longer time. Thus, a repetitive, noninvasive PDT of glioblastoma using an external light source may be possible. We analyze 5-ALA cellular physiology to show that three non-oncology drugs, ciprofloxacin, deferiprone, and telmisartan, can be repurposed to increase light energy capture after 5-ALA, thereby increasing photodynamic treatment’s glioblastoma cell cytotoxicity. The LoGlo PDT approach uses both drug augmentation and prolonged ultra-low noninvasive transcranial light delivery for a repetitive, noninvasive 5-ALA photodynamic treatment of glioblastoma. Full article
(This article belongs to the Special Issue Innovation in Brain Tumor Treatment)
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<p>(<b>A</b>) shows how a cap with 80 LEDs will illuminate the entire brain. (<b>B</b>) indicates how diffusion of any beam of light by brain tissue can work in our favor as well as being a drawback. Proximal LEDs’ light diffuses away from our target GB area, but this light will be, to some unknown degree, compensated for by light from further away, off center, LEDs’ light diffusing toward our target area.</p>
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<p>Depicts 5-ALA entry into GB cells and its indirect action in creating cytotoxic ROS after cells’ exposure to an electromagnetic field (light). By inhibiting 5-ALA export, telmisartan increases intracellular 5-ALA. By inhibiting diversion of PpIX to heme synthesis, deferiprone increases intracellular PpIX. ABCG2 drug efflux pump, synonymous with BRCP; ABCB1, a drug efflux pump.</p>
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56 pages, 9915 KiB  
Article
Citrus: From Symbolism to Sensuality—Exploring Luxury and Extravagance in Western Muslim Bustān and European Renaissance Gardens
by Diego Rivera, Julio Navarro, Inmaculada Camarero, Javier Valera, Diego-José Rivera-Obón and Concepción Obón
Arts 2024, 13(6), 176; https://doi.org/10.3390/arts13060176 - 21 Nov 2024
Abstract
This study delves into the multifaceted realm of citrus fruits, exploring their significance and socioeconomic implications from their early introduction to Western Muslim and Renaissance gardens, tracing their journey throughout history. Employing a multidisciplinary approach, drawing from biological, archaeobotanical, iconographic, and textual sources, [...] Read more.
This study delves into the multifaceted realm of citrus fruits, exploring their significance and socioeconomic implications from their early introduction to Western Muslim and Renaissance gardens, tracing their journey throughout history. Employing a multidisciplinary approach, drawing from biological, archaeobotanical, iconographic, and textual sources, our study offers a comprehensive exploration of citrus symbolism and cultural significance, integrating historical, artistic, horticultural, and socioeconomic viewpoints. The genus Citrus (Rutaceae) comprises around thirty species and its natural habitat spans from the southern slopes of the Himalayas to China, Southeast Asia, nearby islands, and Queensland. Originating from only four of these species, humans have cultivated hundreds of hybrids and thousands of varieties, harnessing their culinary, medicinal, and ornamental potential worldwide. We delve into the symbolic value of citrus fruits, which have served as indicators of economic status and power. From their early presence in Mediterranean religious rituals to their depiction in opulent Roman art and mythical narratives like the Garden of the Hesperides, citrus fruits have epitomized luxury and desire. Christian lore intertwines them with the forbidden fruit of Eden, while Islamic and Sicilian gardens and Renaissance villas signify their prestige. We analyze diverse perspectives, from moralists to hedonists, and examine their role in shaping global agriculture, exemplified by rare varieties like aurantii foetiferi. Full article
12 pages, 3807 KiB  
Article
A Method for Genetic Transformation Using Embryonic Callus of Pinus koraiensis
by Hui Hou, Yanan Wu, Ling Yang, Hao Dong, Wenna Zhao, Hailong Shen, Hanguo Zhang and Shujuan Li
Forests 2024, 15(12), 2058; https://doi.org/10.3390/f15122058 - 21 Nov 2024
Abstract
Pinus koraiensis is classified as a second-class protected wild plant in China, recognized for its considerable economic and ecological importance. However, progress in functional research and breeding applications for this species has been hindered by the lack of an effective genetic transformation system. [...] Read more.
Pinus koraiensis is classified as a second-class protected wild plant in China, recognized for its considerable economic and ecological importance. However, progress in functional research and breeding applications for this species has been hindered by the lack of an effective genetic transformation system. The purpose of this study was to develop a reliable and efficient genetic transformation system for a Pinus koraiensis embryonic callus using somatic embryogenesis technology. The Pinus koraiensis embryonic callus and β-glucuronidase (GUS) were employed as the reporter gene in an Agrobacterium-mediated transformation to investigate critical transformation factors, including antibiotic type and concentration, Agrobacterium bacterial solution concentration, infiltration, and co-cultivation times. The findings indicated that the proliferation of the Pinus koraiensis embryonic callus was substantially inhibited by 10 mg·L−1 of Hygromycin (Hyg), and a remarkable 93.42 ± 2.13% efficiency was achieved with an OD600 absorbance value of 0.6 during transformation. Two days of optimal co-cultivation yielded a transformation rate of 82.61%, with the resistant embryonic callus exhibiting a high GUS staining rate of 88.89%. Resistant somatic embryos were effectively obtained following the optimized protocol. This research contributes to the advancement of seed resource breeding and genetic enhancement for Pinus koraiensis, establishing a solid foundation for the investigation of gene functions specific to this species. Full article
(This article belongs to the Special Issue Forest Tree Breeding, Testing, and Selection)
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<p>Plasmid map.</p>
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<p>Genetic transformation process. (<b>a</b>) Successional culture. (<b>b</b>) Agrobacterium infestation. (<b>c</b>) Co-culture. (<b>d</b>) Recovery Culture. (<b>e</b>) First screening culture. (<b>f</b>) Second screening culture. (<b>g</b>) Third screening culture. (<b>h</b>) Obtaining resistant somatic embryos.</p>
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<p>Effect of Kan on the embryonic callus. (<b>a</b>–<b>f</b>) Proliferation at 0, 10, 20, 40, 80, and 100 mg/L for 15 days of culture. (<b>g</b>) The proliferation rate of the callus with different Kan concentrations, bar = 1 cm. Note: The data have been expressed as mean ± standard deviation. The different lowercase letters in the same column numbers indicate significant differences.</p>
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<p>Effect of Hyg on the embryonic callus. (<b>a</b>–<b>f</b>) Proliferation at 0, 4, 10, 20, 40, and 60 mg/L for 15 days of culture. (<b>g</b>) The proliferation rate of callus with different Hyg concentrations, bar = 1 cm. Note: The data have been expressed as mean ± standard deviation. The different lowercase letters in the same column numbers indicate significant differences.</p>
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<p>GUS staining of resistant embryonic callus. (<b>a1</b>–<b>3</b>) GUS staining of wild-type embryonic callus. (<b>a4</b>–<b>6</b>) GUS staining of resistant callus. (<b>a7</b>–<b>9</b>) GUS staining of LobHLH gene. (<b>b</b>) GUS staining of wild-type embryonic callus. (<b>c</b>) GUS staining of resistant callus. (<b>d</b>) GUS staining of <span class="html-italic">LobHLH</span> gene.</p>
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<p>PCR Assay; (<b>a</b>) PCR assay of resistant callus with GV3101 vector; (<b>b</b>) PCR assay of <span class="html-italic">LobHLH</span> gene; M: 2000 DNA Marker; H: ddH<sub>2</sub>O; WT: Wild Type; P: Plasmid.</p>
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<p>Occurrence of resistant somatic embryos. (<b>a</b>) Somatic embryogenesis in DCR medium with Gellan gum concentrations of 8, 10, and 12 g/L. (<b>b</b>) Somatic embryogenesis in mLV medium with Gellan gum concentrations of 8, 10, and 12 g/L, bar = 1 cm.</p>
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