Nothing Special   »   [go: up one dir, main page]

You seem to have javascript disabled. Please note that many of the page functionalities won't work as expected without javascript enabled.
 
 
Sign in to use this feature.

Years

Between: -

Subjects

remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline

Journals

remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline

Article Types

Countries / Regions

remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline

Search Results (7,590)

Search Parameters:
Keywords = secondary metabolites

Order results
Result details
Results per page
Select all
Export citation of selected articles as:
23 pages, 385 KiB  
Article
Bioactive Properties of Pentacalia vaccinioides (Kunth) Cuatrec. (Asteraceae) Essential Oils: Evaluation of Antimicrobial and Antioxidant Activities
by Luis G. Sequeda-Castañeda, María A. Castellanos-Gómez and Carlos L. A. Céspedes-Acuña
Separations 2025, 12(1), 9; https://doi.org/10.3390/separations12010009 (registering DOI) - 5 Jan 2025
Abstract
Essential oils (EOs) have unique properties, such as antibacterial, antioxidant, and antiviral activities, which are beneficial in various industries, including cosmetics, food, and pharmaceuticals. In this study, the antioxidant and antimicrobial activities of Pentacalia vaccinioides EOs obtained from leaves and flowers (fresh and [...] Read more.
Essential oils (EOs) have unique properties, such as antibacterial, antioxidant, and antiviral activities, which are beneficial in various industries, including cosmetics, food, and pharmaceuticals. In this study, the antioxidant and antimicrobial activities of Pentacalia vaccinioides EOs obtained from leaves and flowers (fresh and dried plant material) were evaluated using hydrodistillation (HD), steam distillation (SD), simultaneous distillation–extraction (SDE), and solid-phase microextraction (SPME) techniques. Antimicrobial activity (minimum inhibitory concentration, MIC) and antioxidant capacity (half-maximal inhibitory concentration, IC50) were determined. The identification and quantification of the compounds present in the EOs were conducted by gas chromatography coupled to mass spectrometry (GC-MS). The main secondary metabolites identified in most samples obtained by different extraction techniques included phenol (~18%), 1S-α-pinene (~15%), β-phellandrene (~13%), β-pinene (~12%), 4-terpineol (~10%), γ-terpinene (~10%), trans-nerolidol (~8%), limonene (~8%), and β-thujene (~6%). EOs obtained by HD, SD, and SDE exhibited antioxidant activity, with IC50 values between 621.7 and 696.6 µg/mL. Additionally, the EOs demonstrated bactericidal activity against Bacillus subtilis and Staphylococcus aureus, with MIC values of 5.0 and 45 µg/mL, respectively. Escherichia coli and Pseudomonas aeruginosa did not show antimicrobial susceptibility to EOs. This study constitutes the first evaluation of Pentacalia vaccinioides EOs, demonstrating their bioactive potential and the relevance of the extraction method. The findings highlight this species as a promising source of natural compounds for therapeutic and preservative applications, depending on the type of plant material and extraction technique used. Future research should investigate how microclimatic conditions and plant development affect the chemical composition and elucidate the molecular mechanisms behind the observed bioactivities to better understand their cellular actions. Furthermore, the evaluation of the applications of EOs and hydrolates in the pharmaceutical and food industries, along with the exploration of the bioactive potential of extraction-derived hydrolates, offers a promising avenue to maximize plant utility. Full article
(This article belongs to the Special Issue Essential Oils: Extraction, Chemical Composition, and Bioactivities)
14 pages, 1109 KiB  
Article
Isolation of Actinobacteria from Date Palm Rhizosphere with Enzymatic, Antimicrobial, Antioxidant, and Protein Denaturation Inhibitory Activities
by Maria Smati, Amina Bramki, Fatima Zohra Makhlouf, Rihab Djebaili, Beatrice Farda, Fatima Zohra Abdelhadi, Nahla Abdelli, Mahmoud Kitouni and Marika Pellegrini
Biomolecules 2025, 15(1), 65; https://doi.org/10.3390/biom15010065 (registering DOI) - 5 Jan 2025
Viewed by 59
Abstract
Arid ecosystems constitute a promising source of actinobacteria producing new bioactive molecules. This study aimed to explore different biological activities of actinomycetes isolated from the rhizosphere of Phoenix dactylifera L. in the Ghardaia region, Algeria. A total of 18 actinobacteria were isolated and [...] Read more.
Arid ecosystems constitute a promising source of actinobacteria producing new bioactive molecules. This study aimed to explore different biological activities of actinomycetes isolated from the rhizosphere of Phoenix dactylifera L. in the Ghardaia region, Algeria. A total of 18 actinobacteria were isolated and studied for their enzymatic and antimicrobial activities. All isolates shared cellulase and catalase activity; most of them produced amylase (94%), esterase (84%), lecithinase and lipoproteins (78%), caseinase (94%), and gelatinase (72%). The isolates could coagulate (56%) or peptonize (28%) skim milk. Overall, 72% of the isolates exhibited significant antibacterial activity against at least one test bacteria, while 56% demonstrated antifungal activity against at least one test fungi. Based on enzyme production and antimicrobial activity, isolate SGI16 was selected for secondary metabolite extraction by ethyl acetate. The crude extract of SGI16 was analyzed using DPPH and BSA denaturation inhibition tests, revealing significant antioxidant power (IC50 = 7.24 ± 0.21 μg mL−1) and protein denaturation inhibitory capacity (IC50 = 492.41 ± 0.47 μg mL−1). Molecular identification based on 16S rDNA analysis showed that SGI16 belonged to the genus Streptomyces. The findings highlight that date palms’ rhizosphere actinobacteria are a valuable source of biomolecules of biotechnological interest. Full article
(This article belongs to the Section Natural and Bio-derived Molecules)
Show Figures

Figure 1

Figure 1
<p>Antibacterial activity of actinobacteria. Vertical bars represent standard error (<span class="html-italic">n</span> = 3). Different letters indicate significant differences at <span class="html-italic">p</span> ≤ 0.05 according to one-way ANOVA followed by Tukey’s HSD test.</p>
Full article ">Figure 2
<p>Antifungal activity of actinobacteria. Vertical bars represent standard error (<span class="html-italic">n</span> = 3). Different letters indicate significant differences at <span class="html-italic">p</span> ≤ 0.05 according to one-way ANOVA followed by Tukey’s HSD test.</p>
Full article ">Figure 3
<p>Phylogenetic tree constructed using the neighbor-joining method showing the relationship of isolate SGI16 with the closest species of the genus <span class="html-italic">Streptomyces</span>. Bootstrap values above 50% (for 1000 replicates) are indicated. Accession numbers for each sequence are shown in parentheses. The scale bar indicates 0.02 substitutions per nucleotide position. <span class="html-italic">Escherichia coli</span> NBRC(T) 102,203 was used as an outgroup.</p>
Full article ">
13 pages, 866 KiB  
Article
In Vivo Effectiveness of Pleurotus ostreatus in Degradation of Toxic Metabolites of Filamentous Fungi Such as Aflatoxin B1 and Zearalenone
by Agnieszka Zapaśnik, Marcin Bryła, Adrian Wojtczak and Barbara Sokołowska
Metabolites 2025, 15(1), 20; https://doi.org/10.3390/metabo15010020 (registering DOI) - 5 Jan 2025
Viewed by 49
Abstract
Background/Objectives: Mycotoxins, secondary metabolites synthesized by filamentous fungi, have been classified as dangerous substances and proven to be carcinogenic, as well as to have genotoxic, nephrotoxic, hepatotoxic, teratogenic, and mutagenic properties. Despite numerous trials to develop an effective and safe-for-human-health method of detoxification, [...] Read more.
Background/Objectives: Mycotoxins, secondary metabolites synthesized by filamentous fungi, have been classified as dangerous substances and proven to be carcinogenic, as well as to have genotoxic, nephrotoxic, hepatotoxic, teratogenic, and mutagenic properties. Despite numerous trials to develop an effective and safe-for-human-health method of detoxification, there is still a high risk associated with the occurrence of these toxins in food and feed. Biological methods of food preservation are an alternative option to conventional chemical and physical methods, characterized by their less negative impact on human health as well as their high efficiency against filamentous fungi and other foodborne pathogens. Mycoremediation is a new biotechnique based on the capability of fungi to detoxify matrices from various pullulans. Ligninolytic enzymes produced by white rot fungi (WRF) characterize a high efficiency in the degradation of various mycotoxins. Methods: In our study, Pleurotus ostreatus, as a representative of WRF, was cultivated on a medium contaminated by AFB1 and ZEN (mushroom substrate and maize) in a few variants of concentration. After the cultivation, medium and fruiting bodies were collected and analyzed with the usage of HPLC and LC/MS methods. Results: The reduction oscillated between 53 and 87% (AFB1) and 73 and 97% (ZEN) depending on the initial concentration of toxins in the medium. Grown fruiting bodies contained insignificant amounts of both toxins. Conclusions: These findings confirm the potential of P. ostreatus as an effective biological agent for reducing mycotoxins in contaminated medium, highlighting its applicability in developing sustainable and safe methods for detoxification. Full article
(This article belongs to the Special Issue Metabolic Properties of Microbial Cells or Enzymes)
Show Figures

Figure 1

Figure 1
<p>The reduction in toxins (AFB1 and ZEN) in spent mushroom medium after the cultivation. Medium 1 (100 μg/kg AFB1), Medium 2 (150 μg/kg AFB1), Medium 3 (300 μg/kg AFB1), Medium 4 (150 μg/kg ZEN), Medium 5 (300 μg/kg ZEN), and Medium 6 (1000 μg/kg ZEN). Groups labeled with different letters (a, b) indicate significant differences (<span class="html-italic">p</span> &lt; 0.05) between the control and the respective medium based on one-way ANOVA.</p>
Full article ">
15 pages, 801 KiB  
Review
Phosphoenolpyruvate and Related Metabolic Pathways Contribute to the Regulation of Plant Growth and Development
by Runzhou Hu, Haiyang Yu, Jing Deng, Shanjing Chen, Ronglan Yang, Hongjun Xie, Xiao Tang, Yaying Yu, Yonghong Duan, Meng Zhang, Mingdong Zhu and Yinghong Yu
Int. J. Mol. Sci. 2025, 26(1), 391; https://doi.org/10.3390/ijms26010391 (registering DOI) - 4 Jan 2025
Viewed by 457
Abstract
Phosphoenolpyruvate (PEP) plays a key role in the development of plants and exists in a wide variety of species. Research on the metabolic activities of PEP in plants has received increasing attention. PEP regulates multiple processes in plant growth and development. This article [...] Read more.
Phosphoenolpyruvate (PEP) plays a key role in the development of plants and exists in a wide variety of species. Research on the metabolic activities of PEP in plants has received increasing attention. PEP regulates multiple processes in plant growth and development. This article provides a comprehensive summary of these pathways, including embryo formation, root development, synthesis of secondary metabolites, and the formation of lignification. We also summarize new findings, including PEP’s role in nodule energy sensing and carbon allocation under the influence of ozone. This review displays the complex and differential regulatory pathways in plant growth and development and provides a reference for basic and applied research on PEP metabolism in plants. Full article
Show Figures

Figure 1

Figure 1
<p>PEP synthesis and metabolism pathways in plants [<a href="#B6-ijms-26-00391" class="html-bibr">6</a>]: ➀ ENO (EC 4.2.1.11), ➁ PEPCK (EC 4.1.1.49), ➂ PK (EC 2.7.1.40), ➃ PEP (EC 4.1.1.31), ➄ PPDK (EC 2.7.9.1), ➅ DAHPS (EC 2.5.1.54), ➆ 3-phosphoshikimate 1-carboxyviniltransferase (EC 2.5.1.19).</p>
Full article ">
23 pages, 2832 KiB  
Article
Anticancer Plant Secondary Metabolites Evicting Linker Histone H1.2 from Chromatin Activate Type I Interferon Signaling
by Olga Vlasova, Irina Antonova, Khamis Magomedova, Alena Osipova, Polina Shtompel, Anna Borunova, Tatiana Zabotina, Gennady Belitsky, Irina Budunova, Albert Jordan, Kirill Kirsanov and Marianna Yakubovskaya
Int. J. Mol. Sci. 2025, 26(1), 375; https://doi.org/10.3390/ijms26010375 (registering DOI) - 4 Jan 2025
Viewed by 208
Abstract
Previously we discovered that among 15 DNA-binding plant secondary metabolites (PSMs) possessing anticancer activity, 11 compounds cause depletion of the chromatin-bound linker histones H1.2 and/or H1.4. Chromatin remodeling or multiH1 knocking-down is known to promote the upregulation of repetitive elements, ultimately triggering an [...] Read more.
Previously we discovered that among 15 DNA-binding plant secondary metabolites (PSMs) possessing anticancer activity, 11 compounds cause depletion of the chromatin-bound linker histones H1.2 and/or H1.4. Chromatin remodeling or multiH1 knocking-down is known to promote the upregulation of repetitive elements, ultimately triggering an interferon (IFN) response. Herein, using HeLa cells and applying fluorescent reporter assay with flow cytometry, immunofluorescence staining and quantitative RT-PCR, we studied effects of PSMs both evicting linker histones from chromatin and not influencing their location in nucleus. We found that (1) 8 PSMs, evicting linker histone H1.2 from chromatin, activated significantly the type I IFN signaling pathway and out of these compounds resveratrol, berberine, genistein, delphinidin, naringenin and curcumin also caused LINE1 expression. Fisetin and quercetin, which also induced linker histone H1.2 eviction from chromatin, significantly activated only type I IFN signaling, but not LINE1 expression; (2) curcumin, sanguinarine and kaempferol, causing significant depletion of the chromatin-bound linker histone H1.4 but not significantly influencing H1.2 presence in chromatin, activate type I IFN signaling less intensively without any changes in LINE1 expression; (3) four PSMs, which did not cause linker histone eviction, displayed neither IFN signaling activation nor enhancement of LINE1 expression. Thus, we have shown for the first time that chromatin destabilization observed by depletion of chromatin-bound linker histone H1.2 caused by anticancer DNA-binding PSMs is accompanied by enhancement of type I IFN signaling, and that LINE1 expression often impacts this activation. Full article
(This article belongs to the Special Issue Plant Derived Anti-Cancer Bioactive Molecules)
34 pages, 3100 KiB  
Review
Plant Secondary Metabolites as Modulators of Mitochondrial Health: An Overview of Their Anti-Oxidant, Anti-Apoptotic, and Mitophagic Mechanisms
by Julia Anchimowicz, Piotr Zielonka and Slawomir Jakiela
Int. J. Mol. Sci. 2025, 26(1), 380; https://doi.org/10.3390/ijms26010380 (registering DOI) - 4 Jan 2025
Viewed by 245
Abstract
Plant secondary metabolites (PSMs) are a diverse group of bioactive compounds, including flavonoids, polyphenols, saponins, and terpenoids, which have been recognised for their critical role in modulating cellular functions. This review provides a comprehensive analysis of the effects of PSMs on mitochondrial health, [...] Read more.
Plant secondary metabolites (PSMs) are a diverse group of bioactive compounds, including flavonoids, polyphenols, saponins, and terpenoids, which have been recognised for their critical role in modulating cellular functions. This review provides a comprehensive analysis of the effects of PSMs on mitochondrial health, with particular emphasis on their therapeutic potential. Emerging evidence shows that these metabolites improve mitochondrial function by reducing oxidative stress, promoting mitochondrial biogenesis, and regulating key processes such as apoptosis and mitophagy. Mitochondrial dysfunction, a hallmark of many pathologies, including neurodegenerative disorders, cardiovascular diseases, and metabolic syndrome, has been shown to benefit from the protective effects of PSMs. Recent studies show that PSMs can improve mitochondrial dynamics, stabilise mitochondrial membranes, and enhance bioenergetics, offering significant promise for the prevention and treatment of mitochondrial-related diseases. The molecular mechanisms underlying these effects, including modulation of key signalling pathways and direct interactions with mitochondrial proteins, are discussed. The integration of PSMs into therapeutic strategies is highlighted as a promising avenue for improving treatment efficacy while minimising the side effects commonly associated with synthetic drugs. This review also highlights the need for future research to elucidate the specific roles of individual PSMs and their synergistic interactions within complex plant matrices, which may further optimise their therapeutic utility. Overall, this work provides valuable insights into the complex role of PSMs in mitochondrial health and their potential as natural therapeutic agents targeting mitochondrial dysfunction. Full article
(This article belongs to the Special Issue Advances in Plant Metabolite Research)
Show Figures

Figure 1

Figure 1
<p>Effects of plant secondary metabolites (PSMs) on disease mechanisms. These compounds: (i) enhance mitochondrial biogenesis, (ii) reduce oxidative stress, (iii) regulate apoptosis and mitophagy, and (iv) alter mitochondrial morphology. Abbreviations: CytC, cytochrome c; Drp1, dynamin-related protein 1; Fis1, mitochondrial fission 1 protein; IMM, inner mitochondrial membrane; IMS, intermembrane space; Mff, mitochondrial fission factor; Mfn1/2, mitofusins 1/2; mtDNA, mitochondrial DNA; NO, nitric oxide; OMM, outer mitochondrial membrane; Opa1, optic atrophy 1 protein; ROS, reactive oxygen species.</p>
Full article ">Figure 2
<p>Key processes and associated proteins involved in mitochondrial dynamics: (i) biogenesis, mediated by PGC-1α (peroxisome proliferator-activated receptor gamma coactivator 1α), Nrf2 (nuclear factor erythroid 2-related factor 2), TFAM (mitochondrial transcription factor A), AMPK (AMP-activated protein kinase), and Sirt1 (sirtuin 1); (ii) fusion, regulated by Mfn1 and Mfn2 (mitofusins 1 and 2) and Opa1 (optic atrophy protein 1); (iii) fission, controlled by Drp1 (dynamin-related protein 1), Fis1 (mitochondrial fission protein 1), and Mff (mitochondrial fission factor); and (iv) mitophagy, involving PINK1 (PTEN-induced putative kinase 1) and Parkin. Green arrows indicate increased/decreased expression of key proteins caused by PSMs.</p>
Full article ">Figure 3
<p>Overview of natural compounds. The primary groups of PSMs discussed in this review include alkaloids (heterocyclic alkaloids), terpenoids, saponins, polyphenols (flavonoids, non-flavonoids, extra virgin olive oil (EVOO) polyphenols, ellagitannins, catechins), glucosinolates, and phytocannabinoids.</p>
Full article ">Figure 4
<p>Chemical structures of berberine (BRB), caffeine (Cof), capsaicin (CS), betanin, liensinine (LIEN), matrine (MAT), huperzine A (Hup A), rhynchophylline (RP), and piperine (PIP).</p>
Full article ">Figure 5
<p>Chemical structures of perillaldehyde (PAE), asiatic acid (AA), α-bisabolol (BSB), astaxanthin (AST), forskolin (FSK), carvacrol (CARV), carnosic acid (CA), linalool (LIN), and genipin.</p>
Full article ">Figure 6
<p>Chemical structures of Ginsenoside Rb1 (Rb1), astragaloside IV (AS-IV), and cycloastragenol (CAG).</p>
Full article ">Figure 7
<p>Chemical structures of oleuropein aglycone (OleA) and hydroxytyrosol (HT).</p>
Full article ">Figure 8
<p>Chemical structures of quercetin, naringenin (NAR), gossypitrin (Gos), silibinin (Silybin, SIL), luteolin (LUT), hesperetin (Hst), hesperidin (Hsd), diosmin (DSM), and icariin (ICA).</p>
Full article ">Figure 9
<p>Chemical structures of magnolol (MGN), tannic acid (TA), resveratrol (RSV), pterostilbene (PTE), and mangiferin (MGF).</p>
Full article ">Figure 10
<p>Chemical structures of gallocatechin gallate (GCG), urolithin A (UA), and sulforaphane (SFN).</p>
Full article ">Figure 11
<p>Chemical structures of cannabinol (CBN), Δ9-tetrahydrocannabinol (THC), and cannabidiol (CBD).</p>
Full article ">
20 pages, 4904 KiB  
Article
Genome-Wide Identification and Expression Analysis of Amino Acid/Auxin Permease (AAAP) Genes in Grapes (Vitis vinifera L.) Under Abiotic Stress and During Development
by Xufeng Guo, Na He, Biying Huang, Chongyao Chen, Yanxia Zhang, Xiaoyu Yang, Jie Li and Zhigang Dong
Plants 2025, 14(1), 128; https://doi.org/10.3390/plants14010128 (registering DOI) - 4 Jan 2025
Viewed by 269
Abstract
Amino acids in wine grapes function as precursors for various secondary metabolites and play a vital role in plant growth, development, and stress resistance. The amino acid/auxin permease (AAAP) genes encode a large family of transporters; however, the identification and function [...] Read more.
Amino acids in wine grapes function as precursors for various secondary metabolites and play a vital role in plant growth, development, and stress resistance. The amino acid/auxin permease (AAAP) genes encode a large family of transporters; however, the identification and function of the AAAP gene family in grapes remain limited. Consequently, we conducted a comprehensive bioinformatics analysis of all AAAP genes in grapes, encompassing genome sequence analysis, conserved protein domain identification, chromosomal localization, phylogenetic relationship analysis, and gene expression profiling. This study identified 60 VvAAAP genes, distributed on 14 chromosomes and classified into eight subfamilies. Microarray and transcriptome data revealed that most VvAAAP genes decrease during development, but VvAAAP7 and VvAAAP33 gradually increase. VvAAAP23 and VvAAAP46 exhibited significantly higher expression levels, while VvAAAP30 demonstrated lower expression when subjected to salt and drought stress. VvAAAP genes exhibited diverse expression patterns, suggesting that the AAAP gene family possesses both diversity and specific functions in grapes. Furthermore, the expression patterns of VvAAAP genes analyzed by RT-qPCR facilitate further investigation into the biological functions of individual genes in different tissues. These findings provide valuable insights into the continued analysis of the AAAP gene family’s functions in grapes. Full article
(This article belongs to the Special Issue Plant Phylogeny, Taxonomy and Evolution)
Show Figures

Figure 1

Figure 1
<p>Phylogenetic analysis of the VvAAAP gene family. The neighbor-joining method was employed to align the amino acid sequences of <span class="html-italic">Arabidopsis thaliana</span> (blue circle), <span class="html-italic">Oryza sativa</span> (green triangle), and <span class="html-italic">Vitis vinifera</span>. L. (yellow pentagram) and to conduct a phylogenetic analysis of the AAAPs. The resulting tree displays eight distinct subfamily members, each represented by a different color.</p>
Full article ">Figure 2
<p>The structure and phylogenetic analysis of the <span class="html-italic">VvAAAP</span> gene. (<b>A</b>) The phylogenetic tree was constructed using the maximum likelihood method. (<b>B</b>) Distribution of motifs in VvAAAP protein, encompassing a total of 20 motifs. (<b>C</b>) VvAAAP gene domain, with the Aa_trans domain highlighted in green. (<b>D</b>) Gene structure of <span class="html-italic">VvAAAP</span>, depicting the untranslated region (UTR) in green and the coding sequence region (CDS) in yellow.</p>
Full article ">Figure 3
<p>Chromosomal distribution and collinearity analysis of the <span class="html-italic">VvAAAPs</span>. (<b>A</b>) <span class="html-italic">VvAAAPs</span> are depicted on chromosomes; the scale bar on the left indicates chromosome length in Mb. (<b>B</b>) Collinearity relationships of <span class="html-italic">AAAP</span> genes among <span class="html-italic">Vitis vinifera</span>, <span class="html-italic">Arabidopsis thaliana</span>, and <span class="html-italic">Oryza sativa</span>. Identified collinear genes are connected by blue lines.</p>
Full article ">Figure 4
<p>Duplication analysis of the <span class="html-italic">VvAAAP</span> genes within grapes. The gray lines in the background indicate all collinear blocks and the black lines indicate segmental duplication pairs of <span class="html-italic">VvAAAP</span> genes in grapes.</p>
Full article ">Figure 5
<p>Identification of <span class="html-italic">cis</span>-acting elements of <span class="html-italic">VvAAAP</span> genes. The <span class="html-italic">cis</span>-acting elements are categorized into three groups based on their functions: abiotic and biotic stresses, phytohormone responsiveness, and plant growth and development. The left side indicates the function of <span class="html-italic">cis</span>-acting elements and their corresponding numbers. The number of each type of <span class="html-italic">cis</span>-acting element in each promoter sequence is displayed on the right side using different colored bars. Each row represents a gene, which is identified on the leftmost side.</p>
Full article ">Figure 6
<p>Expression patterns of <span class="html-italic">VvAAAPs</span> genes across various wine grape cultivars and developmental stages. (<b>A</b>) The quantity of differentially expressed <span class="html-italic">VvAAAPs</span> genes at three developmental stages in distinct grape varieties. (<b>B</b>) Heat map illustrating the expression patterns of <span class="html-italic">VvAAAPs</span> genes during fruit development in different wine grape varieties. The color gradient in the figure represents expression levels, with blue indicating low expression and red denoting high expression. All data have undergone transformation to enhance contrast. CH: Chardonnay, CS: Cabernet Sauvignon, PN: Pinot Noir. EL-33: berries still hard and green, EL-36: berries with intermediate Brix values, EL-37: berries not quite ripe.</p>
Full article ">Figure 7
<p>Heat map depicting expression patterns of <span class="html-italic">VvAAAP</span> genes in response to water deficit irrigation and salt stress. The color gradient represents expression levels, with blue indicating low expression and red indicating high expression. All data has been transformed to enhance contrast. C: Control, WD: Water deficit irrigation, S: Salt stress.</p>
Full article ">Figure 8
<p>RT-qPCR analysis of <span class="html-italic">VvAAAP</span> genes in diverse tissues from multiple wine grape varieties. CS: Cabernet Sauvignon, ME: Merlot, MB: Muscat Blanc, CH: Chardonnay, PN: Pinot Noir. Three biological replicates were performed. Bars graphs and error bars represent average and SE, respectively. Significant differences were indicated by lowercase letters based on Fisher LSD-test between different grape varieties of the same sampling period (<span class="html-italic">p</span> ≤ 0.05).</p>
Full article ">Figure 9
<p>RT-qPCR analysis of <span class="html-italic">VvAAAP</span> genes across developmental stages from different wine grape varieties. CS: Cabernet Sauvignon, ME: Merlot, MB: Muscat Blanc, CH: Chardonnay, PN: Pinot Noir. EL-33: Berries still hard and green, EL-35: Berries begin to color and enlarge, EL-36: Berries with intermediate Brix values, EL-37: Berries not quite ripe, EL-38: Berries harvest-ripe. Three biological replicates were performed. Bars graphs and error bars represent average and SE, respectively. Significant differences were indicated by lowercase letters based on Fisher LSD-test between different grape varieties of the same sampling period (<span class="html-italic">p</span> ≤ 0.05).</p>
Full article ">
27 pages, 1240 KiB  
Review
Therapeutic Capabilities of Triterpenes and Triterpenoids in Immune and Inflammatory Processes: A Review
by Martha Mantiniotou, Vassilis Athanasiadis, Dimitrios Kalompatsios, Eleni Bozinou and Stavros I. Lalas
Compounds 2025, 5(1), 2; https://doi.org/10.3390/compounds5010002 - 3 Jan 2025
Viewed by 439
Abstract
Plant-derived secondary metabolites such as triterpenes and triterpenoids are present in a wide range of plant species. These compounds are particularly attractive due to their extensive range of biological properties and potential applications as intermediates in the synthesis of novel pharmacologically promising medications. [...] Read more.
Plant-derived secondary metabolites such as triterpenes and triterpenoids are present in a wide range of plant species. These compounds are particularly attractive due to their extensive range of biological properties and potential applications as intermediates in the synthesis of novel pharmacologically promising medications. Saponins, which are glycosylated triterpenoids found in nature, exhibit the same properties. At this point, the effectiveness of saponins as an anti-inflammatory medication has been verified. This review article examines the primary connections between immune responses and anti-inflammatory activity, focusing specifically on the correlation between triterpenes and triterpenoids. These connections have been investigated in various cell models, as well as in vitro and in vivo studies. The present research provides a comprehensive overview of the current understanding of the therapeutic capabilities of triterpenes and triterpenoids in immune and inflammatory processes. It also highlights emerging standards and their potential utilization in pharmaceutical and clinical settings. Full article
(This article belongs to the Special Issue Organic Compounds with Biological Activity)
Show Figures

Figure 1

Figure 1
<p>Structures of different triterpenes and triterpenoids derived from the same biosynthetic pathway. A typical triterpenoid structure is depicted in the center.</p>
Full article ">Figure 2
<p>Biosynthesis of triterpenes and triterpenoids through the mevalonate pathway.</p>
Full article ">Figure 3
<p>PRISMA methodology flowchart for literature search.</p>
Full article ">
37 pages, 1017 KiB  
Review
Gut Microbiota Secondary Metabolites: Key Roles in GI Tract Cancers and Infectious Diseases
by Eman K. E. Anwer, Muhammad Ajagbe, Moustafa Sherif, Abobaker S. Musaibah, Shuaib Mahmoud, Ali ElBanbi and Anwar Abdelnaser
Biomedicines 2025, 13(1), 100; https://doi.org/10.3390/biomedicines13010100 - 3 Jan 2025
Viewed by 278
Abstract
The gut microbiota, a dynamic ecosystem of trillions of microorganisms, produces secondary metabolites that profoundly influence host health. Recent research has highlighted the significant role of these metabolites, particularly short-chain fatty acids, indoles, and bile acids, in modulating immune responses, impacting epigenetic mechanisms, [...] Read more.
The gut microbiota, a dynamic ecosystem of trillions of microorganisms, produces secondary metabolites that profoundly influence host health. Recent research has highlighted the significant role of these metabolites, particularly short-chain fatty acids, indoles, and bile acids, in modulating immune responses, impacting epigenetic mechanisms, and contributing to disease processes. In gastrointestinal (GI) cancers such as colorectal, liver, and gastric cancer, microbial metabolites can drive tumorigenesis by promoting inflammation, DNA damage, and immune evasion. Conversely, these same metabolites hold therapeutic promise, potentially enhancing responses to chemotherapy and immunotherapy and even directly suppressing tumor growth. In addition, gut microbial metabolites play crucial roles in infectious disease susceptibility and resilience, mediating immune pathways that impact pathogen resistance. By consolidating recent insights into the gut microbiota’s role in shaping disease and health, this review underscores the therapeutic potential of targeting microbiome-derived metabolites for treating GI cancers and infectious diseases and calls for further research into microbiome-based interventions. Full article
(This article belongs to the Section Microbiology in Human Health and Disease)
19 pages, 3239 KiB  
Article
Reynoutria japonica Houtt. Transformed Hairy Root Cultures as an Effective Platform for Producing Phenolic Compounds with Strong Bactericidal Properties
by Wojciech Makowski, Aleksandra Królicka, Krzysztof Hinc, Agnieszka Szopa, Paweł Kubica, Julia Sroka, Barbara Tokarz and Krzysztof Michał Tokarz
Int. J. Mol. Sci. 2025, 26(1), 362; https://doi.org/10.3390/ijms26010362 - 3 Jan 2025
Viewed by 333
Abstract
Reynoutria japonica Houtt. is the source of various phenolic compounds: phenolic acids, flawan-3-ols, and stilbenes, with a broad range of biological activity. The rhizome (underground organ of these plants) is abundant in secondary metabolites but, in natural conditions, may accumulate various toxic substances [...] Read more.
Reynoutria japonica Houtt. is the source of various phenolic compounds: phenolic acids, flawan-3-ols, and stilbenes, with a broad range of biological activity. The rhizome (underground organ of these plants) is abundant in secondary metabolites but, in natural conditions, may accumulate various toxic substances (such as heavy metals) from the soil. The principal objective of this research was to produce transformed cultures of R. japonica hairy roots that would serve as a valuable source of phenolic compounds, independent of environmental resources. The transformation was performed using a variety of wild strains of Rhizobium rhizogenes bacteria, of which only strain A4 (ATCC 31798) proved effective. The molecular characterization of transformed clones was performed using PCR. The biometric parameters (growth index and dry weight content), phenolic compounds accumulation (DAD-HPLC), antioxidant capacity (DPPH, CUPRAC), and bactericidal properties against Staphylococcus aureus with various sensitivity to antibiotics were evaluated. Two obtained transformed clones (RJ 9 and 30) exhibited the incorporation of the entire bacterial T-DNA into genomic DNA, while clones RJ 10 and 11 demonstrated only the presence of the LT-DNA sequence. The results demonstrated an increase in flawan-3-ols (catechins) accumulation in hairy root tissue relative to non-transformed (NT) plants. Moreover, hairy roots exhibited enhanced antioxidant activity and bactericidal properties compared with NT roots and NT shoots, respectively. Full article
(This article belongs to the Special Issue Developing Methods and Molecular Basis in Plant Biotechnology)
Show Figures

Figure 1

Figure 1
<p>Non-transformed (NT) plants and transformed hairy root cultures (clones: RJ 9, RJ 10, RJ 11, and RJ 30) of <span class="html-italic">Reynoutria japonica</span> after 5 weeks of cultivation.</p>
Full article ">Figure 2
<p>DNA plasmide of <span class="html-italic">R. rhizogenes</span> bacteria.</p>
Full article ">Figure 3
<p>PCR analysis of the DNA from transformed hairy root cultures of <span class="html-italic">Reynoutria japonica</span>: (<b>A</b>). Clone RJ 30, (<b>B</b>). Clone RJ 9, (<b>C</b>). Clone RJ 10, (<b>D</b>). Clone RJ 11, and (<b>E</b>). from <span class="html-italic">Rhizobium rhizogenes</span> A4 (lanes 2–12). GeneRuler TM 100 pb Plus DNA ladder (lane 1). Amplified fragments of <span class="html-italic">rol</span>A (263 bp, lane 2); <span class="html-italic">rol</span>B (337 bp, lane 3); <span class="html-italic">rol</span>C (382 bp, lane 4); <span class="html-italic">rol</span>D (401 bp, lane 5); <span class="html-italic">aux</span>2 (363 bp, lane 6); <span class="html-italic">aux</span>1 (379 bp, lane 7); <span class="html-italic">rol</span>B<sup>TR</sup> (358 bp, lane 8); <span class="html-italic">mas</span>2 (381 bp, lane 9); <span class="html-italic">mas</span>1 (373 bp, lane 10); <span class="html-italic">ags</span>1 (343 bp, lane 11); and <span class="html-italic">vir</span>G (371 bp; lane 12) genes.</p>
Full article ">Figure 4
<p>(<b>A</b>). Growth index [%] of non-transformed (NT plants) and hairy root cultures of <span class="html-italic">Reynoutria japonica</span> (clones: RJ 9, RJ 10, RJ 11, and RJ 30). (<b>B</b>). Dry weight content [%] of non-transformed (NT plants) and hairy root cultures of <span class="html-italic">R. japonica</span> (clones RJ 9, RJ 10, RJ 11, and RJ 30). Different letters indicate statistical significance of means acc. one-way ANOVA, post hoc Tuckey test at <span class="html-italic">p</span> &lt; 0.05.</p>
Full article ">Figure 5
<p>Productivity of (<b>A</b>). total phenolics, (<b>B</b>). phenolic acids, (<b>C</b>). flawan-3-ols, and (<b>D</b>). flavonoids [mg × 100 mL<sup>−1</sup> medium] in non-transformed shoots (NT shoot), roots (NT root), and transformed hairy root cultures (clones: RJ 9, RJ 10, RJ 11, and RJ 30) of <span class="html-italic">Reynoutria japonica</span>. Different letters indicate statistical significance of means acc. one-way ANOVA, post hoc Tuckey test at <span class="html-italic">p</span> &lt; 0.05, DW—dry weight.</p>
Full article ">Figure 6
<p>(<b>A</b>). DPPH radical scavenging activity [mM Trolox × g<sup>−1</sup> DW] of non-transformed shoots (NT shoot) and roots (NT root) and hairy root cultures of <span class="html-italic">Reynoutria japonica</span> (clones: RJ 9, RJ 10, RJ 11, and RJ 30). (<b>B</b>). Antioxidant capacity [mM Trolox × g<sup>−1</sup> DW] of non-transformed shoots (NT shoot) and roots (NT root) and hairy root cultures of <span class="html-italic">R. japonica</span> (clones: RJ 9, RJ 10, RJ 11, and RJ 30). Different letters indicate statistical significance of means acc. one-way ANOVA, post hoc Tuckey test at <span class="html-italic">p</span> &lt; 0.05, DW—dry weight.</p>
Full article ">
15 pages, 6024 KiB  
Article
Identification of Filovirus Entry Inhibitors from Marine Fungus-Derived Indole Alkaloids
by Leah Liu Wang, Javier Seravalli, Brett Eaton, Yi Liu, Michael R. Holbrook, Wen-Jian Lan and Shi-Hua Xiang
Mar. Drugs 2025, 23(1), 23; https://doi.org/10.3390/md23010023 - 3 Jan 2025
Viewed by 448
Abstract
Filoviruses, mainly consisting of the two genera of Ebolavirus and Marburgvirus, are enveloped negative-strand RNA viruses that can infect humans to cause severe hemorrhagic fevers and outbreaks with high mortality rates. However, we still do not have effective medicines for treating these [...] Read more.
Filoviruses, mainly consisting of the two genera of Ebolavirus and Marburgvirus, are enveloped negative-strand RNA viruses that can infect humans to cause severe hemorrhagic fevers and outbreaks with high mortality rates. However, we still do not have effective medicines for treating these diseases. To search for effective drugs, we have identified three marine indole alkaloids that exhibit potent activities against filovirus infection. Thus, it is suggested that marine indole alkaloids can be a valuable compound source for filovirus drug screening and development. Since marine indole alkaloids comprise a large diverse group of secondary metabolites, their biological properties would be helpful for pharmaceutical drug development to treat various filovirus infections. Full article
(This article belongs to the Special Issue Pharmacological Potential of Marine Natural Products, 2nd Edition)
Show Figures

Figure 1

Figure 1
<p>Screening of thirty-one W compounds at 10 µM concentration against pseudotyped filoviruses. EBOV: (<b>A</b>,<b>B</b>): MARV: (<b>C</b>,<b>D</b>). Cells only, TZM-bl cells without compounds as the negative control; Virus only, only viruses without compounds as the positive control.</p>
Full article ">Figure 2
<p>Evaluation of compound cytotoxicity in TZM-bl cells using MTT assay. All thirty-one W compounds were applied for the test at 10 µM concentration for the test Cells only, without compounds.</p>
Full article ">Figure 3
<p>CC<sub>50</sub> analysis (50% cytotoxicity concentration) of W12, W26 and W27 in TZM-bl cells using MTT assay. The toxicity was evaluated from 2 µM to 32 µM of compound concentrations.</p>
Full article ">Figure 4
<p>IC<sub>50</sub> analysis (50% maximal inhibitory concentration) of compound W12, W26 and W27 against pseudotyped virus EBOV. Serial 2-fold dilutions of compound from 0.5 µM to 32 µM were evaluated.</p>
Full article ">Figure 5
<p>IC<sub>50</sub> analysis of compound W12, W26 and W27 against pseudotyped MARV. Serial 2-fold dilutions of compound from 0.5 µM to 32 µM were evaluated.</p>
Full article ">Figure 6
<p>IC<sub>50</sub> analysis of compound W12, W26 and W27 against infectious virus EBOV and MARV in human Huh7 cells. Compound concentrations from 0.1 µM to 100 µM were evaluated. The toxicity was also evaluated from 0.1 µM to 100 µM of compound concentrations. Remdesivir was used as positive controls.</p>
Full article ">Figure 7
<p>Specificity testing of compound W12 and W26 against different pseudotyped viruses (EBOV, MARV, HIV, VSV and A-MLV). HIV strain, HXBc2 (HX); vesicular stomatitis virus (VSV); amphitropic murine leukemia virus (A-MLV).</p>
Full article ">Figure 8
<p>Structural comparisons of compounds W12 (<span class="html-italic">Fumiquinazoline J</span>), W26 (<span class="html-italic">Emindole SB</span>) and W27 (<span class="html-italic">Fusaindoterpene B</span>) with the amino acid <span class="html-italic">Tryptophan</span> (Trp)-derived <span class="html-italic">N-Acetyl-L-Tryptophan</span> (Ac-L-Trp) and <span class="html-italic">N-Acetyl-D-Tryptophan</span> (Ac-D-Trp) forms. The common indole ring is in a red circle and the differences in their side groups are shown. All molecule weights (MWs) of these compounds are also shown below their structures.</p>
Full article ">Figure 9
<p>(<b>A</b>). Molecular docking of compounds W12, W26, W27and the amino acid Tryptophan (Trp)-derived <span class="html-italic">N-Acetyl-L-Tryptophan</span> (Ac-L-Trp) and <span class="html-italic">N-Acetyl-D-Tryptophan</span> (Ac-D-Trp) forms in the NPC1 receptor binding site of EBOV using AutoDock and illustrations using the Chimera (Surface models). (<b>B</b>). Compound W12 ribbon model (<b>left</b>) and the interactions model ((<b>right</b>), made using PyMol). All the docking scores (kcal/mol) are labeled in the models. Indole ring is in the yellow circle. Surface colors: red, hydrophobic; blue, hydrophilic.</p>
Full article ">Figure 10
<p>Compound binding to EBOV GP-RBD. Compound W12 binding affinity at pH 6.1 was evaluated using biolayer interferometry (BLI) assay method. (<b>A</b>). W12 direct binding to RBD of EBOV-GP. (<b>B</b>). W12 binding competition with receptor NPC1 to RBD of EBOV-GP.</p>
Full article ">
25 pages, 2386 KiB  
Article
Phytochemical Characterisation of Sorbus Species: Unveiling Flavonoid Profiles Related to Ploidy and Hybrid Origin
by Emina Korić, Violeta Milutinović, Alma Hajrudinović-Bogunić, Faruk Bogunić, Tatjana Kundaković-Vasović, Irma Gušić, Jelena Radović Selgrad, Kemal Durić and Haris Nikšić
Plants 2025, 14(1), 119; https://doi.org/10.3390/plants14010119 - 3 Jan 2025
Viewed by 291
Abstract
The genetic, morphological and taxonomic diversity of the genus Sorbus is due to homoploid and polyploid hybridisation, autopolyploidy and apomixis, which also influence the production and diversity of secondary metabolites, especially flavonoids. The aim of this study was to investigate the relationships and [...] Read more.
The genetic, morphological and taxonomic diversity of the genus Sorbus is due to homoploid and polyploid hybridisation, autopolyploidy and apomixis, which also influence the production and diversity of secondary metabolites, especially flavonoids. The aim of this study was to investigate the relationships and variations of flavonoids in terms of hybrid origin and ploidy level between the parental species and their hybrid derivatives. The sampling design included leaf material of the following Sorbus accessions from ten natural localities: parental taxa (di-, tri- and tetraploids of S. aria; diploid S. torminalis and S. aucuparia) and their di-, tri- and tetraploid hybrid derivatives from crosses of S. aria × S. torminalis (subg. Tormaria) as well as the tetraploid S. austriaca and S. bosniaca, which originate from crosses of S. aria × S. aucuparia (subg. Soraria). We analysed the flavonoid profiles from the leaf fractions by LC-MS. A total of 23 flavonoids were identified, including apigenin and luteolin derivatives, which distinguish the hybrid groups from each other. This profiling highlights the distinctiveness of the Tormaria and Soraria accessions and emphasises the potential of the subg. Tormaria for further research on bioactive compounds in biological studies. Full article
(This article belongs to the Special Issue Phytochemistry and Pharmacological Properties of Medicinal Plants)
Show Figures

Figure 1

Figure 1
<p>Liquid chromatography–mass spectrometry chromatograms (wavelength, 350 nm) of 17 analysed ethyl acetate fractions (<b>A</b>). The chromatograms are supplemented with localities for each analysed accession. and liquid chromatography–mass spectrometry chromatograms (a—diode array detector, b—mass selective detector) of the ethyl acetate fraction of <span class="html-italic">Sorbus bosniaca</span> leaves (<b>B</b>). Compound numbers are in circles and correspond to those in <a href="#plants-14-00119-t001" class="html-table">Table 1</a>. The chromatograms are supplemented with localities for each analysed accession.</p>
Full article ">Figure 2
<p>PCA and PCoA ordination ((<b>A</b>)—PC1 vs. PC2; (<b>B</b>)—PCo1 vs. PCo2) of the flavonoid compounds of the investigated <span class="html-italic">Sorbus</span> accessions. The ordination diagrams are supplemented with the localities for each studied accession. Compound numbers in circles (<b>A</b>) correspond to those in <a href="#plants-14-00119-t001" class="html-table">Table 1</a>.</p>
Full article ">Figure 3
<p>PCoA ordination (PCo1 <span class="html-italic">vs.</span> PCo2) of the flavonoid compounds of the investigated <span class="html-italic">Sorbus</span> accessions given for the subgenera <span class="html-italic">Tormaria</span> (<b>A</b>), <span class="html-italic">Soraria</span> (<b>B</b>), and <span class="html-italic">Aria</span> (<b>C</b>). The ordination diagrams are supplemented with the localities for each studied accession.</p>
Full article ">Figure 4
<p>Results of multivariate analyses for 17 analysed <span class="html-italic">Sorbus</span> accessions. (<b>A</b>)—dendrogram showing the flavonoid relationships between the flavonoids of the accessions using the UPGMA method; (<b>B</b>)—non-metric dimensional scaling analysis of the studied accessions. Each figure is supplemented with localities for studied accessions.</p>
Full article ">
19 pages, 3218 KiB  
Article
Circadian- and Light-Driven Rhythmicity of Interconnected Gene Networks in Olive Tree
by Ivano Forgione, Tiziana Maria Sirangelo, Gianluca Godino, Elisa Vendramin, Amelia Salimonti, Francesco Sunseri and Fabrizio Carbone
Int. J. Mol. Sci. 2025, 26(1), 361; https://doi.org/10.3390/ijms26010361 - 3 Jan 2025
Viewed by 345
Abstract
A circadian clock (CC) has evolved in plants that synchronizes their growth and development with daily and seasonal cycles. A properly functioning circadian clock contributes to increasing plant growth, reproduction, and competitiveness. In plants, continuous light treatment has been a successful approach for [...] Read more.
A circadian clock (CC) has evolved in plants that synchronizes their growth and development with daily and seasonal cycles. A properly functioning circadian clock contributes to increasing plant growth, reproduction, and competitiveness. In plants, continuous light treatment has been a successful approach for obtaining novel knowledge about the circadian clock. The olive tree (Olea europaea L.) is one of the most important crops in the Mediterranean area, and, so far, limited information is available on its CC gene network. Here, we studied the behavior of circadian rhythm genes under LD (light/darkness) and LL (light/light) conditions, the relationships in this network, and the ability of the treatments to modulate gene expression in the photoprotective pigment and lipid biosynthesis pathways. One month of LL conditions increased olive growth performance, but LL exposure also caused reductions in vegetative growth and chlorophyll accumulation. A panel was designed for a study of the transcription expression levels of the genes involved in light perception, the CC, and secondary metabolite and fatty acid biosynthesis. Our results revealed that the levels of 78% of the transcripts exhibited intraday differences under LD conditions, and most of them retained this rhythmicity after exposure to one and two months of LL conditions. Furthermore, co-regulation within a complex network among genes of photoreceptors, anthocyanidins, and fatty acids biosynthesis was orchestrated by the transcription factor HY5. This research enriches our knowledge on olive trees grown under prolonged irradiation, which may be attractive for the scientific community involved in breeding programs for the improvement of this species. Full article
(This article belongs to the Special Issue Latest Research on Plant Genomics and Genome Editing)
Show Figures

Figure 1

Figure 1
<p>Graphical representation of the experimental design, where stressed leaves are shown after 2 months of LL (light/light) treatment. Start point (SP), 30 days from SP—first midpoint (FM), 60 days from SP—second midpoint (SM), and 90 days from SP—final point (FP). Sampling for the RNA-seq was performed every 6 h for 24 h considering the Zeitgeber time (ZT0, ZT6, ZT12, and ZT18), where ZT0 represents the presumed dawn.</p>
Full article ">Figure 2
<p>Vegetative growth in terms of length of new sprouts (cm) and number of internodes (<b>A</b>) and chlorophyll content in adult, intermediate, and young leaves (<b>B</b>) were measured at one (FM), two (SM), and three (FP) months from the experimental start (SP) in plants grown under LD (light/darkness) and LL (light/light) conditions. The results are presented as the mean value ± standard error. Asterisks indicate significant pairwise differences according to Student’s <span class="html-italic">t</span>-test (* <span class="html-italic">p</span> ≤ 0.05, ** <span class="html-italic">p</span> ≤ 0.01, *** <span class="html-italic">p</span> ≤ 0.001).</p>
Full article ">Figure 3
<p>Venn diagram of significantly different loci detected by Cosinor and ANOVA under LD (<b>A</b>), LL-FM (<b>B</b>), and LL-SM (<b>C</b>) conditions.</p>
Full article ">Figure 4
<p>The heatmap includes 147 loci that exhibit significant oscillation intraday under LD conditions according to Cosinor and/or ANOVA. The color intensity represents the mean value of three replicates of the gene expression at Zeitgeber time (ZT) 0, ZT6, ZT12, and ZT18. The dendrogram indicates the relatedness of genes and helps to identify different clusters. The curves represent the six main different expression patterns formed by the genes belonging to the clusters indicated within each frame.</p>
Full article ">Figure 5
<p>Gene expression pattern comparison between LD (light/darkness) and LL-FM (light/light) conditions at various Zeitgeber times (ZT0, ZT6, ZT12 and ZT18), where ZT0 represents the presumptive dawn. (<b>A</b>) Peak Expression (PE) at ZT0 and ZT18 in both LD and LL-FM; (<b>B</b>) PE at ZT0 and ZT6 in LD and at ZT0 and ZT18 in LL-FM; (<b>C</b>) PE at ZT6 in LD and at ZT0 and ZT18 in LL-FM; (<b>D</b>) PE at ZT0 and ZT6 in LD and at ZT12 in LL-FM; (<b>E</b>) PE at ZT12 in both LD and LL-FM; (<b>F</b>) PE at ZT12 and ZT18 in LD and at ZT12 in LL-FM. Green, black, and red blocks represent high, medium, and low expression, respectively.</p>
Full article ">
27 pages, 5743 KiB  
Review
Antimicrobial Activity of Bacillus Cyclic Lipopeptides and Their Role in the Host Adaptive Response to Changes in Environmental Conditions
by Natalia Markelova and Anastasia Chumak
Int. J. Mol. Sci. 2025, 26(1), 336; https://doi.org/10.3390/ijms26010336 - 2 Jan 2025
Viewed by 287
Abstract
Bacillus cyclic lipopeptides (CLP), part of the three main families—surfactins, iturins, and fengycins—are secondary metabolites with a unique chemical structure that includes both peptide and lipid components. Being amphiphilic compounds, CLPs exhibit antimicrobial activity in vitro, damaging the membranes of microorganisms. However, the [...] Read more.
Bacillus cyclic lipopeptides (CLP), part of the three main families—surfactins, iturins, and fengycins—are secondary metabolites with a unique chemical structure that includes both peptide and lipid components. Being amphiphilic compounds, CLPs exhibit antimicrobial activity in vitro, damaging the membranes of microorganisms. However, the concentrations of CLPs used in vitro are difficult to achieve in natural conditions. Therefore, in a natural environment, alternative mechanisms of antimicrobial action by CLPs are more likely, such as inducing apoptosis in fungal cells, preventing microbial adhesion to the substrate, and promoting the death of phytopathogens by stimulating plant immune responses. In addition, CLPs in low concentrations act as signaling molecules of Bacillus’s own metabolism, and when environmental conditions change, they form an adaptive response of the host bacterium. Namely, they trigger the differentiation of the bacterial population into various specialized cell types: competent cells, flagellated cells, matrix producers, and spores. In this review, we have summarized the current understanding of the antimicrobial action of Bacillus CLPs under both experimental and natural conditions. We have also shown the relationship between some regulatory pathways involved in CLP biosynthesis and bacterial cell differentiation, as well as the role of CLPs as signaling molecules that determine changes in the physiological state of Bacillus subpopulations in response to shifts in environmental conditions. Full article
(This article belongs to the Special Issue Current Research on Bioactives from Natural Products)
Show Figures

Figure 1

Figure 1
<p>Diagram illustrating the structure and function of the nonribosomal peptide synthetase responsible for synthesizing CLPs in <span class="html-italic">Bacillus</span>. A, B, C, D—main biosynthesis genes. (<a href="#ijms-26-00336-f001" class="html-fig">Figure 1</a> was created using the images from Servier Medical Art <a href="https://smart.servier.com/" target="_blank">https://smart.servier.com/</a>, 8 December 2024.)</p>
Full article ">Figure 2
<p>Chemical structure diagram of the <span class="html-italic">Bacillus</span> CLPs: surfactins, fengycins, and iturins. Amino acids in the peptide chain that differ from those in the peptide chain of the main representative of the CLP family are highlighted in a different color. (<a href="#ijms-26-00336-f002" class="html-fig">Figure 2</a> was created using the images from Servier Medical Art <a href="https://smart.servier.com/" target="_blank">https://smart.servier.com/</a>, 8 December 2024.)</p>
Full article ">Figure 3
<p>Antimicrobial activity of surfactins, fengycins, and iturins. ISR: CLP induces phytohormone signaling pathways by activating the NPR1 protein. Pathogen infection removes the priming effect and activates the transcription of defense response genes. Apoptosis: CLP causes apoptotic changes in fungal cells: phosphatidylserine externalization, ROS accumulation, decreased mitochondrial membrane potential decrease, and DNA fragmentation. There are different ways of implementing this process in fungi: mitochondrial metacaspase (MCA) facilitates the release of cytochrome C into the cytoplasm, triggering the caspase-dependent apoptosis pathway; apoptosis-inducing factor (AIF) activates the caspase-independent apoptosis pathway. (<a href="#ijms-26-00336-f003" class="html-fig">Figure 3</a> was created using the images from Servier Medical Art <a href="https://smart.servier.com/" target="_blank">https://smart.servier.com/</a>, 8 December 2024).</p>
Full article ">Figure 4
<p>Differentiation of <span class="html-italic">Bacillus</span> cell subpopulations associated with the impact of CLPs and the key regulators of this process: ComA∼P, DegU∼P, and Spo0A∼P.</p>
Full article ">
12 pages, 2136 KiB  
Article
Heterologous Expression and Adaptive Evolution of ε-Poly-lysine Synthase Gene in Corynebacterium glutamicum
by Long Pan, Yihang Chen, Aimei Liao, Yinchen Hou and Jihong Huang
Fermentation 2025, 11(1), 11; https://doi.org/10.3390/fermentation11010011 - 2 Jan 2025
Viewed by 266
Abstract
ε-Poly-L-lysine (ε-PL) is a natural preservative that has excellent properties such as high safety, good antibacterial effect, wide antibacterial spectrum, and high temperature resistance compared to other food preservatives. At present, the main production strain of ε-PL is Streptomyces albulus (S. albulus). [...] Read more.
ε-Poly-L-lysine (ε-PL) is a natural preservative that has excellent properties such as high safety, good antibacterial effect, wide antibacterial spectrum, and high temperature resistance compared to other food preservatives. At present, the main production strain of ε-PL is Streptomyces albulus (S. albulus). Due to the large amount of mycelium and by-products during fermentation, its production cost is much higher than other food preservatives, which seriously hinders the application of ε-PL in the food industry. Corynebacterium glutamicum (C. glutamicum) is a food safety strain that is widely used in the fermentation industry to produce various amino acids. Its ability to produce high amounts of L-lysine can provide sufficient precursor substances for the synthesis of ε-PL, making it an ideal strain for the heterologous expression of ε-PL synthase genes (pls). In this experiment, a recombinant C. glutamicum capable of synthesizing ε-PL and exhibiting certain physiological resistance to ε-PL was obtained by amplifying pls and heterologous expression in C. glutamicum for the first time. Further optimization of the fermentation temperature, initial pH, and inoculation amount of the recombinant strain resulted in an increase in the ε-PL fermentation yield from 0.12 g/L to 0.22 g/L. Finally, through adaptive evolution of the recombinant strain, the ε-PL tolerance of the recombinant strain was increased to 1.3 g/L, and the yield of ε-PL ultimately reached 0.34 g/L, which increased by 54.55% compared to the initial strain. The recombinant C. glutamicum constructed in this study can significantly shorten the fermentation cycle, reduce bacterial volume and the synthesis of secondary metabolites, which is beneficial for the separation and purification of products, thereby further reducing the production cost of ε-PL and accelerating the process of replacing chemical food preservatives with natural food preservatives. Full article
(This article belongs to the Section Industrial Fermentation)
Show Figures

Figure 1

Figure 1
<p>Construction of recombinant plasmids and the screening and identification of recombinant strain <span class="html-italic">C. glutamicum-pls:</span> (<b>a</b>) <span class="html-italic">pls</span> gene; (<b>b</b>) pXMJ19 plasmids; (<b>c</b>) double enzyme digestion of recombinant plasmids; (<b>d</b>) identification of recombinant <span class="html-italic">C. glutamicum-pXMJ19-pls</span>.</p>
Full article ">Figure 2
<p>The result of the mass spectra of the 1 g/L ε-PL standard (<b>a</b>) and in fermentation broth (<b>b</b>).</p>
Full article ">Figure 3
<p>Optimization of the fermentation conditions of <span class="html-italic">C. glutamicum-pXMJ19-pls</span> to produce ε-PL at the flask cultivation level: (<b>a</b>) inoculation volume; (<b>b</b>) fermentation temperature; (<b>c</b>) initial pH; (<b>d</b>) shaker speed.</p>
Full article ">Figure 4
<p>The ε-PL production of different strains after adaptation and evolution (A: strain with empty plasmids; B: <span class="html-italic">C. glutamicum</span>-pXMJ19-<span class="html-italic">pls</span>; B1: strain that can tolerate a concentration of 0.3 g/L ε-PL; B2: strain that can tolerate a concentration of 0.6 g/L ε-PL; B3: strain that can tolerate a concentration of 0.9 g/L ε-PL; B4: strain that can tolerate a concentration of 1.2 g/L ε-PL; B5: strain that can tolerate a concentration of 1.3 g/L ε-PL).</p>
Full article ">
Back to TopTop