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Search Results (340)

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36 pages, 66814 KiB  
Article
Characterization of Irrigated Rice Cultivation Cycles and Classification in Brazil Using Time Series Similarity and Machine Learning Models with Sentinel Imagery
by Andre Dalla Bernardina Garcia, Ieda Del’Arco Sanches, Victor Hugo Rohden Prudente and Kleber Trabaquini
AgriEngineering 2025, 7(3), 65; https://doi.org/10.3390/agriengineering7030065 - 4 Mar 2025
Viewed by 100
Abstract
The mapping and monitoring of rice fields on a large scale using medium and high spatial resolution data (<10 m) is essential for efficient agricultural management and food security. However, challenges such as managing large volumes of data, addressing data gaps, and optimizing [...] Read more.
The mapping and monitoring of rice fields on a large scale using medium and high spatial resolution data (<10 m) is essential for efficient agricultural management and food security. However, challenges such as managing large volumes of data, addressing data gaps, and optimizing available data are key focuses in remote sensing research using automated machine learning models. In this sense, the objective of this study was to propose a pipeline to characterize and classify three different irrigated rice-producing regions in the state of Santa Catarina, Brazil. To achieve this, we used Sentinel-1 Synthetic Aperture Radar (SAR) polarizations and Sentinel-2 optical multispectral spectral bands along with multiple time series indices. The processing of input data and exploratory analysis were performed using a clustering algorithm based on Dynamic Time Warping (DTW), with K-means applied to the time series. For the classification step in the proposed pipeline, we utilized five traditional machine learning models available on the Google Earth Engine platform to determine which had the best performance. We identified four distinct irrigated rice cropping patterns across Santa Catarina, where the northern region favors double cropping, the south predominantly adopts single cropping, and the central region shows both, a flattened single and double cropping. Among the tested classification models, the SVM with Sentinel-1 and Sentinel-2 data yielded the highest accuracy (IoU: 0.807; Dice: 0.885), while CART and GTBoost had the lowest performance. Omission errors were reduced below 10% in most models when using both sensors, but commission errors remained above 15%, especially for patches in which rice fields represent less than 10% of area. These findings highlight the effectiveness of our proposed feature selection and classification pipeline for improving the generalization of irrigated rice mapping in large and diverse regions. Full article
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<p>Map showing the study area’s location in the eastern part of the Santa Catarina state, Brazil, divided into N—north, C—central, and S—south regions. Inside these regions there are the train (green) and test (yellow) patches, based on the reference rice fields (red).</p>
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<p>Distribution and statistical summary of irrigated rice field sizes by region: number of fields, mean, median, maximum, and minimum sizes (ha).</p>
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<p>Flowchart detailing the processes for extracting the most prevalent time series and mapping the distribution of different crop types across regions. The last two green boxes represent outputs used to support decision-making in the classification process.</p>
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<p>Flowchart illustrating the process of generating binary images to differentiate between irrigated rice and non-irrigated areas. The first green box (<b>top-left</b>) is derived from the decisions made based on the outcomes of <a href="#agriengineering-07-00065-f003" class="html-fig">Figure 3</a>. The last three green boxes (<b>bottom-right</b>) are categorized according to the density of irrigated rice areas per sample patch.</p>
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<p>Spatial distribution of temporal patterns of the NDVI index for irrigated rice fields in the study area (N—north, C1 and C2—central, S—south regions). Clusters 0, 1, 2, and 3 are different types of irrigated rice time series. The undefined class corresponds to areas that were not possible to cluster into groups.</p>
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<p>Spatial distribution of temporal patterns of the NDWI index for irrigated rice fields in the study area (N—north, C1 and C2—central, S—south regions). Clusters 0, 1, 2, and 3 are different types of irrigated rice time series. The undefined class corresponds to areas that were not possible to cluster into groups.</p>
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<p>Spatial distribution of temporal pattern clusters of the Vertical emitter–Vertical receiver (VV) index for irrigated rice fields in the study area (N—north, C1 and C2—central, S—south regions). Clusters 0, 1, 2, and 3 are different types of irrigated rice time series. The undefined class corresponds to areas that were not possible to cluster into groups.</p>
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<p>Spatial distribution of temporal pattern clusters of the Cross-Ratio (CR) index for irrigated rice fields in the study area (N—north, C1 and C2—central, S—south regions). Clusters 0, 1, 2, and 3 are different types of irrigated rice time series. The undefined class corresponds to areas that were not possible to cluster into groups.</p>
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<p>Most representative growth pattern of irrigated rice by region for optical indices, considering the more frequent clusterings in both seasons (2017/2018 and 2018/2019).</p>
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<p>Most representative growth pattern of irrigated rice by region for SAR polarization and indices, considering the more frequent clusterings in both seasons (2017/2018 and 2018/2019).</p>
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<p>Growth behavior of irrigated rice according to different indices, sensors, and stages of the growth cycle. (<b>A</b>) Time series pattern for NDVI and NDWI for single-harvest rice fields. (<b>B</b>) Time series pattern for VH and VV polarizations for single-harvest rice fields. (<b>C</b>) Time series pattern for NDVI and NDWI for double-harvest rice fields. (<b>D</b>) Time series pattern for VH and VV polarizations for double-harvest rice fields. At the bottom, the photos illustrate the condition of the irrigated rice fields at various stages of crop development. Source of photos: Douglas George de Oliveira and EPAGRI.</p>
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<p>Overall comparison of instance segmentation evaluation metrics for different models, regions, and datasets.</p>
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<p>Performance metrics for rice field classifications considering the testing patches with less then 10% of rice, between 10 and 30%, and over 30%.</p>
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<p>Qualitative analysis for different rice field classification models, considering the testing patches with less then 10% of rice, between 10 and 30%, and over 30% for different image datasets. The initial three columns are images from the west-central region, characterized by higher elevation. Columns 4, 5, and 6 are images from the north region, notable for its higher occurrence of double-harvest. The final three columns are images from the south region, where single-harvest is prevalent and rice fields are typically more extensive. In the figure, black represents ‘non-rice fields’, while yellow areas represent ‘rice fields’.</p>
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19 pages, 2082 KiB  
Article
Impact of Different Water Supply Modes on the Hydraulic Reliability of Large-Scale Irrigation Pipeline Network
by Songmei Zai, Minmin Nie, Feng Wu, Jing Huang, Xingjie Gao and Weiye Liu
Appl. Sci. 2025, 15(5), 2716; https://doi.org/10.3390/app15052716 - 3 Mar 2025
Viewed by 178
Abstract
This study investigates the impact of various water supply modes on the hydraulic reliability of large-scale irrigation networks. An EPANET hydraulic model was developed to simulate the performance of the irrigation network under three supply modes: segmented, uniform, and random water supply. Three [...] Read more.
This study investigates the impact of various water supply modes on the hydraulic reliability of large-scale irrigation networks. An EPANET hydraulic model was developed to simulate the performance of the irrigation network under three supply modes: segmented, uniform, and random water supply. Three key indicators were selected to evaluate the hydraulic reliability of the pipeline network under each mode: Water Supply Uniformity Cu, Pressure Reliability Hk, and Velocity Reliability v. These parameters were standardized using the min-max normalization method, and the resulting reliability scores were scaled to a unified range of 0–5, where higher values indicate greater system reliability. The results demonstrate that the EPANET model effectively simulates the hydraulic performance of large-scale irrigation networks. Specifically, under the segmented water supply mode, the reliability values for water supply uniformity, node pressure head, and flow velocity are 4.04, 0.84, and 0.64, respectively. Under this mode, significant flow deviations and pressure head fluctuations occur between the branches, with flow velocities typically exceeding the optimal range. Furthermore, the node pressure head at the branch inlets fails to meet the required minimum pressure head (Hmin), indicating potential operational inefficiencies. In the uniform water supply mode, the highest reliability values are observed for water supply uniformity (4.76) and flow rate (4.49), with node pressure head reliability (0.94) slightly surpassing that of the segmented mode. Pressure head fluctuations and flow deviations are significantly reduced, with flow velocities generally aligning with the economic flow rates of the pipeline. However, despite these improvements, many nodes still fail to meet the required minimum pressure head, indicating limitations in meeting demand under peak conditions. In the random water supply mode, node pressure head reliability reaches its highest value (1.54), while water supply uniformity and flow rate reliabilities are 3.99 and 2.50, respectively. Flow deviations and pressure head fluctuations are comparable to those observed in the uniform supply mode. Notably, a higher proportion of nodes meet the minimum pressure head requirement compared to the uniform mode. Overall, the hydraulic reliability of the pipeline network is highest under the uniform water supply mode (2.83), followed by the random water supply mode (2.49), with the segmented water supply mode exhibiting the lowest hydraulic reliability (1.79). These findings provide valuable insights for the selection of optimal water supply modes and the assessment of hydraulic reliability in large-scale irrigation systems. Full article
(This article belongs to the Special Issue State-of-the-Art Agricultural Science and Technology in China)
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<p>Schematic diagram of irrigation pipe network.</p>
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<p>Flow and pressure head at the inlet of each branch pipe in the second group under segmented water supply conditions. (<b>a</b>) the hydraulic performance of the main pipe I under conditions of malfunction. (<b>b</b>) the hydraulic performance of the main pipe II under conditions of malfunction. (<b>c</b>) the hydraulic performance of the main pipe III under conditions of malfunction. (<b>d</b>) the hydraulic performance of main pipe I under normal operating conditions. (<b>e</b>) the hydraulic performance of main pipe II under normal operating conditions. (<b>f</b>) the hydraulic performance of main pipe III under normal operating conditions. Note: In the figure, the blue segments of parameter Q indicate unmet water supply demand at branch valves (insufficient flow rates), while the black segments signify fulfilled demand (adequate flow supply). For H, green represents compliance with <span class="html-italic">H<sub>min</sub></span>, whereas red indicates non-compliance with <span class="html-italic">H</span><sub>min</sub>. These annotations apply to <a href="#applsci-15-02716-f002" class="html-fig">Figure 2</a>.</p>
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<p>Flow rate and pressure head at the inlet of each branch pipe under uniform water supply conditions. (<b>a</b>) the hydraulic performance of main pipe I. (<b>b</b>) the hydraulic performance of main pipe II. (<b>c</b>) the hydraulic performance of main pipe III. Note: In the figure, the blue segments of parameter Q indicate unmet water supply demand at branch valves (insufficient flow rates), while the black segments signify fulfilled demand (adequate flow supply). For H, green represents compliance with <span class="html-italic">H<sub>min</sub></span>, whereas red indicates non-compliance with <span class="html-italic">H<sub>min</sub></span>. These annotations apply to <a href="#applsci-15-02716-f003" class="html-fig">Figure 3</a>.</p>
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<p>Flow and pressure head at the inlet of each branch pipe under random water supply mode. (<b>a</b>) the hydraulic performance of main pipe I. (<b>b</b>) the hydraulic performance of main pipe II. (<b>c</b>) the hydraulic performance of main pipe III. Note: In the figure, the blue segments of parameter Q indicate unmet water supply demand at branch valves (insufficient flow rates), while the black segments signify fulfilled demand (adequate flow supply). For H, green represents compliance with <span class="html-italic">H<sub>min</sub></span>, whereas red indicates non-compliance with <span class="html-italic">H<sub>min</sub></span>. These annotations apply to <a href="#applsci-15-02716-f004" class="html-fig">Figure 4</a>.</p>
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23 pages, 4449 KiB  
Article
Estimation of Groundwater Recharge and Assessment of Groundwater Quality in the Weining Plain, China
by Mengyu Gong, Peiyue Li and Jiajia Kong
Water 2025, 17(5), 704; https://doi.org/10.3390/w17050704 - 28 Feb 2025
Viewed by 190
Abstract
The Weining Plain is in the semi-arid northwest region of China, with groundwater as its main source for various purposes. This research provided a detailed investigation into the groundwater exploitation status in the Weining Plain, analyzed the groundwater quality for different purposes, and [...] Read more.
The Weining Plain is in the semi-arid northwest region of China, with groundwater as its main source for various purposes. This research provided a detailed investigation into the groundwater exploitation status in the Weining Plain, analyzed the groundwater quality for different purposes, and estimated the groundwater recharges using water budget analysis with end member mixing analysis. The entropy water quality index was applied to assess the overall quality of drinking water, and the industrial water quality index and several agricultural water quality indicators were used for the assessment of groundwater quality for industrial and agricultural uses. The findings showed that the groundwater recharge in the research area primarily comes from irrigation infiltration and leakage of the irrigation canal system which account for approximately 50–60% of the total groundwater recharge. The overall drinking water quality is poor, with over 80% being of moderate to poor quality and requiring treatment. A large proportion of the groundwater in the research area is suitable for irrigation. However, groundwater has a corrosive effect on boilers, and there is a high risk of boiler scaling and foaming. Only 12.41% of the water samples have good water quality for industrial use, and the treatment of the water quality for industrial uses is needed. This study can help local decision-makers understand the availability of groundwater resources in the Weining Plain and manage groundwater resources reasonably. Full article
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<p>Location of the study area and groundwater sampling points.</p>
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<p>Hydrogeological map and cross-sections.</p>
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<p>Procedures of EWQI in water quality assessment.</p>
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<p>Proportion of groundwater usage in different sectors.</p>
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<p>End member mixing diagram of Cl<sup>−</sup> and δ<sup>18</sup>O: (<b>a</b>) Weining Plain, (<b>b</b>) Zhongwei Plain, and (<b>c</b>) Zhongning Plain.</p>
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<p>Spatial distribution of major groundwater quality parameters. (<b>a</b>) SO<sub>4</sub><sup>2−</sup>, (<b>b</b>) Mn, (<b>c</b>) TH, (<b>d</b>) NO<sub>3</sub>-N.</p>
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<p>Comprehensive assessment of groundwater quality for drinking purposes using the EWQI method.</p>
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<p>Diagrams showing irrigation water quality: (<b>a</b>) Wilcox diagrams and (<b>b</b>) USSL diagrams.</p>
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22 pages, 16320 KiB  
Article
Accurate Estimation of Plant Water Content in Cotton Using UAV Multi-Source and Multi-Stage Data
by Shuyuan Zhang, Haitao Jing, Jihua Dong, Yue Su, Zhengdong Hu, Longlong Bao, Shiyu Fan, Guldana Sarsen, Tao Lin and Xiuliang Jin
Drones 2025, 9(3), 163; https://doi.org/10.3390/drones9030163 - 22 Feb 2025
Viewed by 240
Abstract
Cotton (Gossypium hirsutum L.), as a significant economic crop, has undergone significant modernization in planting methods, and its smart irrigation management relies heavily on accurate cotton water content (CWC) estimation. Existing ground-based methods for measuring CWC are constrained by their limited scope [...] Read more.
Cotton (Gossypium hirsutum L.), as a significant economic crop, has undergone significant modernization in planting methods, and its smart irrigation management relies heavily on accurate cotton water content (CWC) estimation. Existing ground-based methods for measuring CWC are constrained by their limited scope and high monitoring costs. Although the development of unmanned aerial vehicle (UAV) technology has provided a new opportunity for large-scale CWC measurements, there remains a gap in the study of CWC estimation in cotton using multi-source and multi-stage data. In this study, we used UAV-based data, including texture features, vegetation indices, and a heat index, and applied four machine learning algorithms, i.e., partial least-squares regression (PLSR), support vector regression (SVR), random forest regression (RFR), and extreme gradient boosting (XGB), to estimate CWC. The findings demonstrate that in a single growth stage, the boll setting stage performs the best, and multi-source and multi-stage inputs can improve the accuracy of CWC estimation, with the best performance of XGB (R2 = 0.860). Overall, this study highlights that the synergistic use of multi-source and multi-stage data can effectively improve CWC estimation in cotton, suggesting UAV-based data will lead to a brighter future for precision agriculture. Full article
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<p>The general map of the study area: (<b>a</b>) a map of China; (<b>b</b>) a map of Xinjiang administrative region; (<b>c</b>) the experimental site of the study area.</p>
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<p>Temperature changes during the cotton growing season.</p>
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<p>UAV system and corresponding devices: (<b>a</b>) DJI M210 RTK V2; (<b>b</b>) Micasense RedEdge MX dual multispectral sensors; (<b>c</b>) ZENMUSE XT2 RGB and ZENMUSE XT2 thermal infrared sensors; (<b>d</b>) temperature calibration board; (<b>e</b>) multispectral image calibration board; (<b>f</b>) ground control point.</p>
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<p>Conversion of DN value to temperature.</p>
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<p>Technical route for estimating CWC.</p>
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<p>Distribution of CWC at different growth stages: 25% and 75% represent the upper and lower quartiles, respectively; IQR stands for interquartile range; the black line represents the upper and lower boundaries of the detected outliers. *** Represents a significant role at the level <span class="html-italic">p</span> &lt; 0.001.</p>
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<p>Performance of four machine learning models after multi-source and multi-stage data combination: (<b>a</b>) XGB; (<b>b</b>) RFR; (<b>c</b>) SVR; (<b>d</b>) PLSR. The histograms at the top and right of the figure represent the distribution of the test and training set data in measured and predicted values, where the training set is in yellow and the test set is in green.</p>
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<p>Spatial distribution of CWC on 9 August 2024.</p>
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<p>The model features’ importance ranking and SHAP analysis.</p>
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26 pages, 6164 KiB  
Article
Remote Sensing and Soil Moisture Sensors for Irrigation Management in Avocado Orchards: A Practical Approach for Water Stress Assessment in Remote Agricultural Areas
by Emmanuel Torres-Quezada, Fernando Fuentes-Peñailillo, Karen Gutter, Félix Rondón, Jorge Mancebo Marmolejos, Willy Maurer and Arturo Bisono
Remote Sens. 2025, 17(4), 708; https://doi.org/10.3390/rs17040708 - 19 Feb 2025
Viewed by 294
Abstract
Water scarcity significantly challenges agricultural systems worldwide, especially in tropical areas such as the Dominican Republic. This study explores integrating satellite-based remote sensing technologies and field-based soil moisture sensors to assess water stress and optimize irrigation management in avocado orchards in Puerto Escondido, [...] Read more.
Water scarcity significantly challenges agricultural systems worldwide, especially in tropical areas such as the Dominican Republic. This study explores integrating satellite-based remote sensing technologies and field-based soil moisture sensors to assess water stress and optimize irrigation management in avocado orchards in Puerto Escondido, Dominican Republic. Using multispectral imagery from the Landsat 8 and 9 satellites, key vegetation indices (NDVI and SAVI) and NDWI, a water-related index that specifically indicates changes in crop water contents, rather than vegetation vigor, were derived to monitor vegetation health, growth stages, and soil water contents. Crop coefficient (Kc) values were calculated from these vegetation indices and combined with reference evapotranspiration (ETo) estimates derived from three meteorological models (Hargreaves–Samani, Priestley–Taylor, and Blaney–Criddle) to assess crop water requirements. The results revealed that soil moisture data from sensors at 30 cm depth strongly correlated with satellite-derived estimates, reflecting avocado trees’ critical root zone dynamics. Additionally, seasonal patterns in the vegetation indices showed that NDVI and SAVI effectively tracked vegetative growth stages, while NDWI indicated changes in the canopy water content, particularly during periods of water stress. Integrating these satellite-derived indices with field measurements allowed a comprehensive assessment of crop water requirements and stress, providing valuable insights for improving irrigation practices. Finally, this study demonstrates the potential of remote sensing technologies for large-scale water stress assessment, offering a scalable and cost-effective solution for optimizing irrigation practices in water-limited regions. These findings advance precision agriculture, especially in tropical environments, and provide a foundation for future research aimed at enhancing data accuracy and optimizing water management practices. Full article
(This article belongs to the Special Issue Remote Sensing for Eco-Hydro-Environment)
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<p>(<b>a</b>) The geographical location of the study site; (<b>b</b>) a high-resolution satellite image of the orchard. Both maps include latitude and longitude references in degrees (WGS 84/EPSG:4326) to ensure spatial accuracy.</p>
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<p>Spectral reflectance curves of avocado orchards derived from Landsat 8 and 9 satellite data. The figure shows the distinct spectral bands (blue, green, red, near-infrared, and shortwave infrared) used to calculate the vegetation and water indices. The variation in reflectance values across these bands provides insights into plant health, water contents, and stress conditions. Seasonal changes in reflectance highlight the impact of varying water availability on vegetation indices, illustrating how water stress influences plant vitality throughout the growing season.</p>
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<p>Three-dimensional spatial distribution of sensors in the field. The horizontal plane (X and Y coordinates) represents the layout of the field, where the distances in meters are illustrative and do not reflect the actual distance between sensors. In contrast, the vertical axis (Z coordinate) corresponds to the sensor placement depth in centimeters.</p>
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<p>Daily variations in temperature, precipitation, and solar radiation for 2021 and 2022.</p>
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<p>Temperature, precipitation, and solar radiation variability for 2021 and 2022.</p>
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<p>Top- and bottom-performing sensors: correlation analysis with satellite data (2021–2022).</p>
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<p>Top- and bottom-performing sensors: correlation analysis with satellite data (2021–2022).</p>
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<p>Satellite-based soil moisture and precipitation by season (2021–2022).</p>
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<p>Seasonal evolution of vegetative expression using NDVI, NDWI, and SAVI (2021–2022).</p>
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<p>Kc values calculated using the Kc-NDVI relation for the three indices.</p>
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<p>Seasonal evolution of ETo using three models (2021–2022).</p>
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22 pages, 24106 KiB  
Article
An Automated Method to Assess the Suitability of Existing Boreholes for Solar-Based Pumping Systems: An Application to Southern Madagascar
by Fabio Fussi, Víctor Gómez-Escalonilla, Jean-Jacques Rahobisoa, Hariliva Omena Anahy Ramanantsoa and Pedro Martinez-Santos
Sustainability 2025, 17(3), 1255; https://doi.org/10.3390/su17031255 - 4 Feb 2025
Viewed by 569
Abstract
Groundwater provides a strategic resource in the face of uncertain climate conditions in arid and semi-arid regions. Solar-based groundwater pumping is quickly gaining ground across rural sub-Saharan Africa, promoted by national and international organizations as the new technology of choice for water supply [...] Read more.
Groundwater provides a strategic resource in the face of uncertain climate conditions in arid and semi-arid regions. Solar-based groundwater pumping is quickly gaining ground across rural sub-Saharan Africa, promoted by national and international organizations as the new technology of choice for water supply and irrigation. A crucial question in large-scale developments is whether pre-existing boreholes can be fitted with solar pumps. Based on data from southern Madagascar, this paper provides an automated method to deal with this. Our approach relies on a combination of hydrogeological criteria, including well screen depth, drawdown in relation to the static water column, and pumping efficiency. The results show that 60% of the existing boreholes in the study region are potentially suitable for the installation of solar pumps. Out of these, 54% would be able to supply water to large rural communities (>1000 people), whereas the remaining 46% present the potential to provide water to medium communities (500 to 1000 people). There are, however, concerns as to whether the information contained in the dataset is fully representative of current borehole conditions. Furthermore, the potential for installation of solar-based supplies must be placed in the context of the available resources and local capacities in order to ensure future sustainability. Full article
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<p>Location of the study area. (<b>a</b>) Madagascar in the context of African countries; (<b>b</b>) Bekily region in Madagascar; (<b>c</b>) boreholes with available pump test information in the Bekily region. Communes are administrative entities akin to municipalities.</p>
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<p>Conceptual model of the Authossère and screen position methods based on the estimation of expected drawdown.</p>
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<p>Calculating borehole efficiency for different flow rates based on Jacob’s approach.</p>
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<p>Schematic overview of the automated classification procedure.</p>
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<p>(<b>a</b>) Spatial distribution of maximum step test yield. (<b>b</b>) Spatial distribution of drawdown tests per number of steps.</p>
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<p>Pump test results of boreholes that can produce more than 4 m<sup>3</sup>/h but the maximum yield cannot be estimated. Village Beraketa Centre.</p>
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<p>Pump test results of boreholes that can potentially produce 4 m<sup>3</sup>/h or more, but the available pump test has maximum yield too low for the interpretation in that yield range. Village Antsohamamy.</p>
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<p>Pump test results of boreholes that can potentially be suitable for solar pumps, but the limited maximum yield used in the step drawdown test is not adequate for a reliable interpretation. Village Ankilimiary bas (commune Ankanarabo Nord).</p>
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<p>Spatial distribution of boreholes and their suitability for the installation of solar pumps. This information is overlaid with the distribution of geological materials and the drainage network.</p>
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<p>Maximum operating flow rate as per the Authossère method.</p>
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<p>Minimum distance between each borehole and the closest borehole.</p>
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19 pages, 19562 KiB  
Article
Inversion of Soil Moisture Content in Silage Corn Root Zones Based on UAV Remote Sensing
by Qihong Da, Jixuan Yan, Guang Li, Zichen Guo, Haolin Li, Wenning Wang, Jie Li, Weiwei Ma, Xuchun Li and Kejing Cheng
Agriculture 2025, 15(3), 331; https://doi.org/10.3390/agriculture15030331 - 2 Feb 2025
Viewed by 820
Abstract
Accurately monitoring soil moisture content (SMC) in the field is crucial for achieving precision irrigation management. Currently, the development of UAV platforms provides a cost-effective method for large-scale SMC monitoring. This study investigates silage corn by employing UAV remote sensing technology to obtain [...] Read more.
Accurately monitoring soil moisture content (SMC) in the field is crucial for achieving precision irrigation management. Currently, the development of UAV platforms provides a cost-effective method for large-scale SMC monitoring. This study investigates silage corn by employing UAV remote sensing technology to obtain multispectral imagery during the seedling, jointing, and tasseling stages. Field experimental data were integrated, and supervised classification was used to remove soil background and image shadows. Canopy reflectance was extracted using masking techniques, while Pearson correlation analysis was conducted to assess the linear relationship strength between spectral indices and SMC. Subsequently, convolutional neural networks (CNNs), back-propagation neural networks (BPNNs), and partial least squares regression (PLSR) models were constructed to evaluate the applicability of these models in monitoring SMC before and after removing the soil background and image shadows. The results indicated that: (1) After removing the soil background and image shadows, the inversion accuracy of SMC for CNN, BPNN, and PLSR models improved at all growth stages. (2) Among the different inversion models, the accuracy from high to low was CNN, PLSR, BPNN. (3) From the perspective of different growth stages, the inversion accuracy from high to low was seedling stage, tasseling stage, jointing stage. The findings provide theoretical and technical support for UAV multispectral remote sensing inversion of SMC in silage corn root zones and offer validation for large-scale soil moisture monitoring using remote sensing. Full article
(This article belongs to the Section Digital Agriculture)
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<p>Overview of the study area. Note: On the left side is the research location map of Minle County, Zhangye City, Gansu Province, China. On the right is the land cover type of Minle County and the DEM of Liuba Town.</p>
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<p>Field experiment layout. Note: The silage corn was planted with a spacing of 25 cm between plants and 50 cm between rows.</p>
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<p>Overall flow chart of this study.</p>
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<p>Sampling point layout. Note: Four ground control points (GCPs) were established within the study area, with sample points evenly distributed across the region. Precise coordinates were obtained using real-time kinematic (RTK) positioning. The UAV images were georeferenced and accurately corrected using Pix4D Mapper software by manually marking the control points.</p>
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<p>Statistics of SMC samples by fertility period. Note: (<b>a</b>–<b>c</b>) are the sample statistics of measured SMC at seedling stage, jointing stage, and tasseling stage, respectively, including the total sample set and the division of the modeling set and validation set.</p>
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<p>Extraction process of maize canopy reflectance. (<b>a</b>) Classification result. (<b>b</b>) Plant bands were extracted. (<b>c</b>) Canopy vector files were constructed. (<b>d</b>) Canopy reflectance was extracted.</p>
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<p>Spectral reflectance of maize canopy at different growth stages.</p>
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<p>Scatter matrix and Pearson correlation analysis. The lower triangular matrix represents the linear relationship between spectral indices and SMC after removing the soil background and image shadows. The upper triangular matrix shows the correlation coefficients between variables.</p>
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<p>Inversion effect of soil moisture content (SMC).</p>
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<p>Inversion result graph.</p>
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<p>Comparison of inverted SMC and observed SMC at sampling point.</p>
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23 pages, 1657 KiB  
Article
Impact of Digital Literacy on Farmers’ Adoption Behaviors of Green Production Technologies
by Haoyuan Liu, Zhe Chen, Suyue Wen, Jizhou Zhang and Xianli Xia
Agriculture 2025, 15(3), 303; https://doi.org/10.3390/agriculture15030303 - 30 Jan 2025
Viewed by 723
Abstract
The application of digital technology offers new opportunities to promote the green transformation and upgrading of agriculture. Farmers’ digital literacy, as a critical link between digital technology and agricultural green development, significantly influences their production decisions. Whether digital literacy serves as an enabling [...] Read more.
The application of digital technology offers new opportunities to promote the green transformation and upgrading of agriculture. Farmers’ digital literacy, as a critical link between digital technology and agricultural green development, significantly influences their production decisions. Whether digital literacy serves as an enabling factor driving farmers’ adoption of agricultural green production technologies warrants further exploration. This paper uses the entropy method to measure farmers’ digital literacy levels and employs a Probit model for empirical analysis of survey data from 643 farmers in Shandong and Shaanxi provinces, examining how farmers’ digital literacy influences their adoption of green production technologies. The baseline regression result indicates that digital literacy can significantly increase farmers’ adoption of green production technologies. A mechanism analysis reveals that enhanced farmers’ digital literacy promotes the adoption of green production technologies through three pathways: enhancing farmers’ risk perception, expanding farmers’ digital social capital, and strengthening the effectiveness of technology promotion. Heterogeneity analysis demonstrates that improved digital literacy significantly enhances the adoption of four technologies—water-saving irrigation, pest control, pollution-free pesticide, and straw return to fields—and exerts a stronger impact on large-scale and middle-generation farmers. Accordingly, this study suggests improving digital village infrastructure, enhancing farmers’ digital literacy comprehensively, and formulating differentiated extension policies. Full article
(This article belongs to the Section Agricultural Economics, Policies and Rural Management)
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<p>Theoretical model of the impact of digital literacy on farmers’ adoption behavior of green production technologies.</p>
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<p>Map of survey regions.</p>
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20 pages, 3500 KiB  
Article
A Validation of FruitLook Data Using Eddy Covariance in a Fully Mature and High-Density Japanese Plum Orchard in the Western Cape, South Africa
by Munashe Mashabatu, Nonofo Motsei, Nebojsa Jovanovic and Luxon Nhamo
Water 2025, 17(3), 324; https://doi.org/10.3390/w17030324 - 23 Jan 2025
Viewed by 544
Abstract
The cultivation of Japanese plums (Prunus salicina Lindl.) in South Africa has increased over the years, yet their water use is unknown. Their cultivation in the Western Cape Province of South Africa is highly dependent on supplementary irrigation, indicating their high water [...] Read more.
The cultivation of Japanese plums (Prunus salicina Lindl.) in South Africa has increased over the years, yet their water use is unknown. Their cultivation in the Western Cape Province of South Africa is highly dependent on supplementary irrigation, indicating their high water use demand. This study used remote sensing techniques to estimate the actual evapotranspiration (ETc act) of the Japanese plums to assess their water use on a large scale. The accuracy of the procedure had to be validated before getting to tangible conclusions. The eddy covariance was used to measure ETc act in an African Delight plum orchard to validate the FruitLook remote sensing data for the 2023–2024 hydrological year and irrigation season. The seasonal and annual plum crop water requirements measured using the eddy covariance system were 751 and 996 mm, while those estimated by FruitLook were 744 and 948 mm, respectively. Although FruitLook slightly underestimated plum ETc act by a Pbias of −6.15%, it performed well with a Nash–Sutcliffe efficiency (NSE) of 0.91. FruitLook underestimated evapotranspiration mainly during the peak summer season with full vegetation cover when the model may inaccurately represent irrigation impacts, soil moisture availability, and localized advection effects, better captured by the eddy covariance system. Based on the results, FruitLook proved to be sufficiently accurate for large-scale applications to estimate evapotranspiration in Japanese plum orchards in the Western Cape. Full article
(This article belongs to the Special Issue Crop Evapotranspiration, Crop Irrigation and Water Savings)
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<p>Location of the African Delight Japanese plum orchards at Klipboschlaagte farm in Robertson, and nearby weather station.</p>
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<p>Location of EC tower in the African Delight orchard (Block K35) at the Smuts Brothers farm. (<b>a</b>) Sensors mounted above the ground surface and (<b>b</b>) sensors installed below the ground surface.</p>
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<p>Annual variation (August–July) of the maximum and minimum temperature, and the maximum and minimum relative humidity at Robertson weather station for the 2023–2024 season.</p>
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<p>Annual variation (1 August 2023–31 July 2024) of daily solar radiation, rainfall, reference evapotranspiration (ETo), and windspeed at Robertson weather station for the 2023–2024 season.</p>
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<p>Variations of daily energy fluxes measured with an eddy covariance micro-meteorological station during the May 2023–May 2024 hydrological period in Robertson. H, Rn, G, and LE are the sensible heat, net radiation, soil heat flux, and latent heat, respectively.</p>
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<p>(<b>a</b>–<b>d</b>) Ratios of the daily energy fluxes (both daytime and nighttime) in the African Delight orchard for the May 2023–May 2024 hydrological year in Robertson. H, Rn, G, and LE are the sensible heat, soil heat flux, net radiation, and the latent heat respectively.</p>
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<p>Annual variation of the daily actual evapotranspiration (ET<sub>c act</sub>) measured by the eddy covariance system in the 2023–2024 African Delight season in Robertson.</p>
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<p>Annual variation of the monthly crop coefficient (Kc) during the 2023–2024 hydrological year for cv. African Delight in Robertson.</p>
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<p>FAO segmented curve derived using the derived Kc act. The red dotted line represents the interpolation of the graph up to June.</p>
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<p>Comparison between the weekly FruitLook-based actual evapotranspiration and eddy covariance (EC) system-measured actual evapotranspiration (ET<sub>c act</sub>) in an African Delight orchard (Robertson) for the 2023–2024 hydrological year.</p>
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<p>A scatter plot showing the correlation between the actual evapotranspiration (ET<sub>c act</sub>) measured by the eddy covariance (EC) system and estimated by FruitLook for the African Delight orchard in Robertson. CI represents the Confidence Interval.</p>
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<p>Percentage bias of the performance of FruitLook when estimating the actual evapotranspiration in an African Delight orchard in Robertson. The dashed line is a linear trendline.</p>
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28 pages, 9770 KiB  
Article
Spatiotemporal Interpolation of Actual Evapotranspiration Across Turkey Using the Australian National University Spline Model: Insights into Its Relationship with Vegetation Cover
by İsmet Yener
Sustainability 2025, 17(2), 430; https://doi.org/10.3390/su17020430 - 8 Jan 2025
Viewed by 700
Abstract
Accurate and precise prediction of actual evapotranspiration (AET) on a large scale is a fundamental issue in natural sciences such as forestry (especially in species selection and planning), hydrology, and agriculture. With the estimation of AET, controlling dams, agriculture, and irrigation and providing [...] Read more.
Accurate and precise prediction of actual evapotranspiration (AET) on a large scale is a fundamental issue in natural sciences such as forestry (especially in species selection and planning), hydrology, and agriculture. With the estimation of AET, controlling dams, agriculture, and irrigation and providing potable and utility water supply for industry would be possible. Gathering reliable AET data is possible only with a sufficient weather station network, which is rarely established in many countries like Turkey. Therefore, climate models must be developed for reliable AET data, especially in countries with complex terrains. This study aimed to generate spatiotemporal AET surfaces using the Australian National University spline (ANUSPLIN) model and compare the results with the maps generated by the inverse distance weighting (IDW) and co-kriging (KRG) interpolation techniques. Findings from the interpolated surfaces were validated in three ways: (1) some diagnostics from the surface fitting model include measures such as signal, mean, root mean square predictive error, root mean square error estimate, root mean square residual of the spline, and the estimated standard deviation of noise in the spline; (2) a comparison of common error statistics between the interpolated surfaces and withheld climate data; and (3) evaluation by comparing model results with other interpolation methods using metrics such as mean absolute error, mean error, root mean square error, and adjusted R2 (R2adj). The correlation between AET and normalized difference vegetation index (NDVI) was also evaluated. ANUSPLIN outperformed the other techniques, accounting for 73 to 94% (RMSE: 3.7 to 26.1%) of the seasonal variation in AET with an annual value of 83% (RMSE: 10.0%). The correlation coefficient between observed and predicted AET based on NDVI ranged from 0.49 to 0.71 for point-based and 0.62 to 0.83 for polygon-based data. The generated maps at a spatial resolution of 0.005° × 0.005° could provide valuable insights to researchers and practitioners in the natural resources management domain. Full article
(This article belongs to the Section Sustainable Water Management)
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<p>LULC map of the study area and locations of test and training weather stations. AGRI: Agriculture, ARTSUR: Artificial surfaces, ARTVEG: Artificial vegetation, PASGRA: Pasture and grasslands.</p>
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<p>The flowchart showing the data collection, analysis, and methods used in the study (GCV: Generalized Cross Validation, RTVAR: Square Root of the Variance Estimate, RTGCV: Square Root of the Generalized Cross Validation, RTMSE: Square Root of the Mean Square Error, RTMSR: Square Root of the Mean Square Residual).</p>
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<p>The interpolated AET surfaces by season for Turkey ((<b>a</b>): spring, (<b>b</b>): summer, (<b>c</b>): autumn, (<b>d</b>): winter, (<b>e</b>): annual).</p>
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<p>The surfaces for standard error of interpolated AET by season ((<b>a</b>): spring, (<b>b</b>): summer, (<b>c</b>): autumn, (<b>d</b>): winter, (<b>e</b>): annual).</p>
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<p>The distribution of AET (<b>a</b>) and error covariance of AET (<b>b</b>) to the region by season. MAR: Marmara, AEG: Aegean, BS: Black Sea, CA: Central Anatolia, EA: Eastern Anatolia, MED: Mediterranean, SE: Southeastern Anatolia. Spr: spring, Sum: summer, Aut: autumn, Win: winter, Ann: annual.</p>
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<p>Average NDVI by season for Turkey ((<b>a</b>): spring, (<b>b</b>): summer, (<b>c</b>): autumn, (<b>d</b>): winter, (<b>e</b>): annual).</p>
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<p>Average seasonal and annual NDVI by geographical regions (Spr: spring, Sum: summer, autumn: Aut, Win: winter, Ann: annual.). Colors represent the seasons and annual values: orange for spring, blue for summer, yellow for autumn, gray for winter, and green for annual. Different lower-case letters attached to mean NDVI values indicate significant differences by region according to the Dunn–Bonferroni test following the Kruskal–Wallis test.</p>
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<p>Areal distribution of biome types (<b>a</b>) and average seasonal NDVI values by biome (<b>b</b>) across regions.</p>
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<p>Correlation between NDVI-based predicted and observed AET using point data ((<b>a</b>): spring, (<b>b</b>): summer, (<b>c</b>): autumn, (<b>d</b>): winter, (<b>e</b>): annual).</p>
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<p>Correlation between NDVI-based predicted and observed AET using polygon data ((<b>a</b>): summer, (<b>b</b>): spring, (<b>c</b>): autumn, (<b>d</b>): winter, (<b>e</b>): annual).</p>
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30 pages, 10463 KiB  
Article
Enhancing Soil Moisture Prediction in Drought-Prone Agricultural Regions Using Remote Sensing and Machine Learning Approaches
by Xizhuoma Zha, Shaofeng Jia, Yan Han, Wenbin Zhu and Aifeng Lv
Remote Sens. 2025, 17(2), 181; https://doi.org/10.3390/rs17020181 - 7 Jan 2025
Viewed by 748
Abstract
The North China Plain is a crucial agricultural region in China, but irregular precipitation patterns have led to significant water shortages. To address this, analyzing the high-resolution dynamics of root-zone soil moisture transport is essential for optimizing irrigation strategies and improving water resource [...] Read more.
The North China Plain is a crucial agricultural region in China, but irregular precipitation patterns have led to significant water shortages. To address this, analyzing the high-resolution dynamics of root-zone soil moisture transport is essential for optimizing irrigation strategies and improving water resource efficiency. The Richards equation is a robust model for describing soil moisture transport dynamics across multiple soil layers, yet its application at large spatial scales is hindered by its sensitivity to boundary conditions and model parameters. This study introduces a novel approach that, for the first time, employs a continuous time series of near-surface soil moisture as the upper boundary condition in the Richards equation to estimate high-resolution root-zone soil moisture in the North China Plain, thus enabling its large-scale application. Singular spectrum analysis (SSA) was first applied to reconstruct site-specific time series, filling in missing and singular values. Leveraging observational data from 617 monitoring sites across the North China Plain and multiple spatial covariates, we developed a machine learning model to estimate near-surface soil moisture at a 1 km resolution. This high-resolution, continuous near-surface soil moisture series then served as the upper boundary condition for the Richards equation, facilitating the estimation of root-zone soil moisture across the region. The results indicated that the machine learning model achieved a correlation coefficient (R) of 0.92 for estimating spatial near-surface soil moisture. Analysis of spatial covariates showed that atmospheric forcing factors, particularly temperature and evaporation, had the most substantial impact on model performance, followed by static factors such as latitude, longitude, and soil texture. With a continuous time series of near-surface soil moisture, the Richards equation method accurately predicted multi-layer soil moisture and demonstrated its applicability for large-scale spatial use. The model yielded R values of 0.97, 0.78, 0.618, and 0.43, with RMSEs of 0.024, 0.06, 0.08, and 0.11, respectively, for soil layers at depths of 10 cm, 20 cm, 40 cm, and 100 cm across the North China Plain. Full article
(This article belongs to the Special Issue Mapping Essential Elements of Agricultural Land Using Remote Sensing)
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<p>Distribution of vegetation types and administrative divisions in the NPC.</p>
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<p>Flowchart for estimating soil moisture at different spatial layers in the North China Plain based on the Richards equation.</p>
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<p>Definition sketch of <math display="inline"><semantics> <mrow> <mi mathvariant="normal">α</mi> <mo>(</mo> <mi mathvariant="normal">ψ</mi> <mo>)</mo> </mrow> </semantics></math>.</p>
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<p>(<b>a</b>) Comparison between SSA-predicted time series and observed trends; (<b>b</b>) time series comparison for data imputation at the start and end of the year; (<b>c</b>) scatter plot of SSA results.</p>
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<p>(<b>a</b>) Comparison between SSA-predicted time series and observed trends; (<b>b</b>) time series comparison for data imputation at the start and end of the year; (<b>c</b>) scatter plot of SSA results.</p>
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<p>(<b>a</b>) Scatter plot for RF validation; (<b>b</b>) SHAP value interpretation of RF model outputs. Note: In the figure, Tair represents the air temperature 2 m above the surface of land, ocean, or inland water bodies; LST_diff denotes the daily difference in land surface temperature.</p>
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<p>(<b>a</b>) Scatter plot for RF validation; (<b>b</b>) SHAP value interpretation of RF model outputs. Note: In the figure, Tair represents the air temperature 2 m above the surface of land, ocean, or inland water bodies; LST_diff denotes the daily difference in land surface temperature.</p>
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<p>Comparison between RF model calculations and site observations.</p>
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<p>(<b>a</b>) Histogram of R value over time series; (<b>b</b>) Histogram of RMSE value over time series.</p>
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<p>Spatial distribution of R values and RMSE values.</p>
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<p>(<b>a</b>) Spatial distribution of SSM; (<b>b</b>) Spatial distribution of RZSM.</p>
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<p>(<b>a</b>) Spatial distribution of SSM; (<b>b</b>) Spatial distribution of RZSM.</p>
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<p>Comparison of soil moisture in each layer between SSMRE model simulation and site measured values.</p>
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<p>(<b>a</b>) SSM RMSE value; (<b>b</b>) Root layer soil moisture RMSE value changing trend.</p>
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<p>(<b>a</b>) R value of each layer verified at different sites; (<b>b</b>) RMSE value in each layer verified at different sites.</p>
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<p>(<b>a</b>) The R values for the multi-layer soil profile were calculated using the Richards equation, with high-resolution SSM as the upper boundary condition; (<b>b</b>) The RMSE values for the multi-layer soil profile.</p>
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<p>Box plots of parameter sensitivity analyses of soil moisture model outputs by layer.</p>
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<p>Histogram of the sensitivity analysis of different parameters.</p>
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22 pages, 5970 KiB  
Article
Search of Reflectance Indices for Estimating Photosynthetic Activity of Wheat Plants Under Drought Stress
by Firuz Abdullaev, Daria Churikova, Polina Pirogova, Maxim Lysov, Vladimir Vodeneev and Oksana Sherstneva
Plants 2025, 14(1), 91; https://doi.org/10.3390/plants14010091 - 31 Dec 2024
Viewed by 595
Abstract
Global climate change and the associated increasing impact of droughts on crops challenges researchers to rapidly assess plant health on a large scale. Photosynthetic activity is one of the key physiological parameters related to future crop yield. The present study focuses on the [...] Read more.
Global climate change and the associated increasing impact of droughts on crops challenges researchers to rapidly assess plant health on a large scale. Photosynthetic activity is one of the key physiological parameters related to future crop yield. The present study focuses on the search for reflectance parameters for rapid screening of wheat genotypes with respect to photosynthetic activity under drought conditions. The development of drought stress modelled in laboratory conditions by stopping irrigation caused changes in chlorophyll fluorescence parameters that corresponded to a decrease in photosynthetic activity. In particular, a decrease in the photochemical quantum yield of photosystem II (ΦPSII), which characterizes the rate of linear electron transport in the photosynthetic electron transport chain and is one of the most sensitive parameters responding at the early stages of drought stress, was observed. Along with the measurement of the photosynthetic activity, spectral characteristics of wheat plants were recorded using hyperspectral imaging. Normalized difference indices (NDIs) were calculated using the reflectance intensity of wheat shoots in the range from 400 to 1000 nm. Four NDIs that showed a strong correlation with the level of photosynthetic activity estimated by ΦPSII were selected from different wavelength ranges (NDI610/450, NDI572/545, NDI740/700, and NDI820/630). The indices NDI572/545 and NDI820/630 showed the best combination of sensitivity to soil moisture deficit and strong relationship with photosynthetic activity under drought stress. Possible molecular and physiological causes of this relationship are discussed. The use of the proposed indices will allow to monitor in detail the specific features of wheat plant response and can serve as one of the criteria for selection of the most promising genotypes in breeding of drought-tolerant cultivars. Full article
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<p>Dry weight of 28-day-old wheat seedlings of the CC (shaded bars) and DS (solid bars) groups. Data are presented as mean ± SEM. *, **, *** indicate significant differences between experimental and control groups (<span class="html-italic">t</span>-test, * <span class="html-italic">p</span> &lt; 0.05; ** <span class="html-italic">p</span> &lt; 0.01; *** <span class="html-italic">p</span> &lt; 0.001).</p>
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<p>WC in 28-day-old wheat seedlings of the CC (shaded bars) and DS (solid bars) groups. Data are presented as mean ± SEM. *** indicates significant differences between experimental and control groups (<span class="html-italic">t</span>-test, <span class="html-italic">p</span> &lt; 0.001).</p>
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<p>Dynamics of residual levels of ChlF parameters during drought development. Data are presented as mean ± SEM.</p>
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<p>Drought-induced dynamics of residual Φ<sub>PSII</sub> level of four groups of cultivars classified according to the patterns of changes in photosynthetic activity during drought development. Data are presented as mean ± SEM. NT—group with low photosynthetic tolerance, MT—group with high photosynthetic tolerance to the short-term moderate DS but not tolerant to long-term intensive DS, HT—group showing reduced photosynthetic activity under short-term moderate DS and high photosynthetic tolerance to the long-term intensive DS, HHT—group with high photosynthetic tolerance to both short-term and longer-term DS. Significant differences between the groups are indicated by different letters (ANOVA followed by Tukey’s test, <span class="html-italic">p</span> &lt; 0.05).</p>
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<p>Reflectance spectra of CC (<b>A</b>) and DS (<b>B</b>) plants, and the difference spectra between CC and DS plants (<b>C</b>) at different days of drought. Data are presented as mean spectra for each cultivar.</p>
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<p>Heat maps of NDI differences between CC and DS plants (∆NDIs) at different days of drought. Data are presented as mean ∆NDIs (<b>top right</b>) and <span class="html-italic">p</span>-values (<b>bottom left</b>).</p>
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<p>Heat maps of Pearson correlation coefficients between NDIs (in % of control) and the residual values of ChlF parameters in wheat plants after 5 days of DS. Data are presented as correlation coefficients (<b>top right</b>) and <span class="html-italic">p</span>-values (<b>bottom left</b>).</p>
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<p>Heat maps of Pearson correlation coefficients between NDIs (in % of control) and the residual values of ChlF parameters in wheat plants after 10 days of DS. Data are presented as correlation coefficients (<b>top right</b>) and <span class="html-italic">p</span>-values (<b>bottom left</b>).</p>
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<p>Drought-induced dynamics of NDIs (in % of control) of four groups of cultivars classified according to the patterns of changes in photosynthetic activity during drought development. Data are presented as mean ± SEM. NT—group with low photosynthetic tolerance, MT—group with high photosynthetic tolerance to the short-term moderate DS but not tolerant to long-term intensive DS, HT—group showing reduced photosynthetic activity under short-term moderate DS and high photosynthetic tolerance to the long-term intensive DS, HHT—group with high photosynthetic tolerance to both short-term and longer-term DS. Significant differences between the groups are indicated by different letters (ANOVA followed by Tukey’s test, <span class="html-italic">p</span> &lt; 0.05).</p>
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<p>Correlation analysis of the relationship between NDIs (in % of control) and the residual value of Φ<sub>PSII</sub> in four groups of cultivars classified according to the patterns of changes in photosynthetic activity during drought development (after 5 and 10 days of DS). The charts show Pearson linear coefficients and the <span class="html-italic">p</span>-values (two-tailed).</p>
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<p>Correlation analysis of the relationship between the absolute values of NDIs and Φ<sub>PSII</sub> in four groups of cultivars classified according to the patterns of changes in photosynthetic activity during drought development (after 5 and 10 days of DS). The charts show Pearson linear coefficients and the <span class="html-italic">p</span>-values (two-tailed).</p>
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<p>Experiment design. CC—control group, DS—drought stress treatment, HSI—hyperspectral imaging, ChlF—chlorophyll fluorescence imaging.</p>
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19 pages, 7445 KiB  
Article
An Interpretable Model for Salinity Inversion Assessment of the South Bank of the Yellow River Based on Optuna Hyperparameter Optimization and XGBoost
by Xia Liu, Yu Hu, Xiang Li, Ruiqi Du, Youzhen Xiang and Fucang Zhang
Agronomy 2025, 15(1), 18; https://doi.org/10.3390/agronomy15010018 - 26 Dec 2024
Cited by 1 | Viewed by 516
Abstract
Soil salinization is a serious land degradation phenomenon, posing a severe threat to regional agricultural resource utilization and sustainable development. It has been a mainstream trend to use machine-learning methods to achieve monitoring of large-scale salinized soil quickly. However, machine learning model training [...] Read more.
Soil salinization is a serious land degradation phenomenon, posing a severe threat to regional agricultural resource utilization and sustainable development. It has been a mainstream trend to use machine-learning methods to achieve monitoring of large-scale salinized soil quickly. However, machine learning model training requires many samples and hyper-parameter optimization and lacks solvability. To compare the performance of different machine-learning models, this study conducted a soil sampling experiment on saline soils along the south bank of the Yellow River in Dalate Banner. The experiment lasted two years (2022 and 2023) during the spring bare soil period, collecting 304 soil samples. The soil salinity was estimated with the multi-source remote sensing satellite data by combining the extreme gradient boosting model (XGBoost), Optuna hyper-parameter optimization, and Shapley addition (SHAP) interpretable model. Correlation analysis and continuous variable projection were employed to identify key inversion factors. The regression effects of partial least squares regression (PLSR), geographically weighted regression (GWR), long short-term memory networks (LSTM), and extreme gradient boosting (XGBoost) were compared. The optimal model was selected to estimate soil salinity in the study area from 2019 to 2023. The results showed that the XGBoost model fitted optimally, the test set had high R2 (0.76) and the ratio of performance to deviation (2.05), and the estimation results were consistent with the measured salinity values. SHAP analysis revealed that the salinity index and topographic factors were the primary inversion factors. Notably, the same inversion factor influenced varying soil salinity estimates at different locations. The saline soils of the study area in 2019 and 2023 were 65% and 44%, respectively, and the overall trend of soil salinization decreased. From the viewpoint of spatial distribution, the degree of soil salinization showed a gradually increasing trend from south to north, and it was most serious on the side near the Yellow River. This study is of great significance for the quantitative estimation of salinized soil in the irrigated area on the south bank of the Yellow River, the prevention and control of soil salinization, and the sustainable development of agriculture. Full article
(This article belongs to the Section Precision and Digital Agriculture)
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<p>Overview of the study area and distribution of sampling sites ((<b>a</b>) geographic location map; (<b>b</b>,<b>c</b>) elevation map, distribution of sampling sites).</p>
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<p>(<b>a</b>) Descriptive statistics box plot of measured SSC (CV: coefficient of variation); (<b>b</b>) SSC distribution map of different types of saline–alkali soils.</p>
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<p>Correlation analysis between soil salinity and inversion factors.</p>
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<p>Performance comparison of different model training sets.</p>
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<p>Performance comparison of different model test sets.</p>
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<p>Soil content grading chart 2019–2023.</p>
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<p>Area of different classes of saline land from 2019 to 2023 ((<b>a</b>) change in area; (<b>b</b>) rate of change).</p>
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<p>Transfer matrix between areas of different types of saline soils.</p>
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<p>(<b>a</b>) SHAP global interpretation map: feature summary map for SHAP; (<b>b</b>) heat map of SHAP-based features.</p>
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<p>SSC inversion data-processing procedure. Table (<b>a</b>) in the figure shows the 8th data point, and table (<b>b</b>) shows the 15th.</p>
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34 pages, 2586 KiB  
Review
Advancements and Perspective in the Quantitative Assessment of Soil Salinity Utilizing Remote Sensing and Machine Learning Algorithms: A Review
by Fei Wang, Lili Han, Lulu Liu, Chengjie Bai, Jinxi Ao, Hongjiang Hu, Rongrong Li, Xiaojing Li, Xian Guo and Yang Wei
Remote Sens. 2024, 16(24), 4812; https://doi.org/10.3390/rs16244812 - 23 Dec 2024
Cited by 1 | Viewed by 1279
Abstract
Soil salinization is a significant global ecological issue that leads to soil degradation and is recognized as one of the primary factors hindering the sustainable development of irrigated farmlands and deserts. The integration of remote sensing (RS) and machine learning algorithms is increasingly [...] Read more.
Soil salinization is a significant global ecological issue that leads to soil degradation and is recognized as one of the primary factors hindering the sustainable development of irrigated farmlands and deserts. The integration of remote sensing (RS) and machine learning algorithms is increasingly employed to deliver cost-effective, time-efficient, spatially resolved, accurately mapped, and uncertainty-quantified soil salinity information. We reviewed articles published between January 2016 and December 2023 on remote sensing-based soil salinity prediction and synthesized the latest research advancements in terms of innovation points, data, methodologies, variable importance, global soil salinity trends, current challenges, and potential future research directions. Our observations indicate that the innovations in this field focus on detection depth, iterations of data conversion methods, and the application of newly developed sensors. Statistical analysis reveals that Landsat is the most frequently utilized sensor in these studies. Furthermore, the application of deep learning algorithms remains underexplored. The ranking of soil salinity prediction accuracy across the various study areas is as follows: lake wetland (R2 = 0.81) > oasis (R2 = 0.76) > coastal zone (R2 = 0.74) > farmland (R2 = 0.71). We also examined the relationship between metadata and prediction accuracy: (1) Validation accuracy, sample size, number of variables, and mean sample salinity exhibited some correlation with modeling accuracy, while sampling depth, variable type, sampling time, and maximum salinity did not influence modeling accuracy. (2) Across a broad range of scales, large sample sizes may lead to error accumulation, which is associated with the geographic diversity of the study area. (3) The inclusion of additional environmental variables does not necessarily enhance modeling accuracy. (4) Modeling accuracy improves when the mean salinity of the study area exceeds 30 dS/m. Topography, vegetation, and temperature are relatively significant environmental covariates. Over the past 30 years, the global area affected by soil salinity has been increasing. To further enhance prediction accuracy, we provide several suggestions for the challenges and directions for future research. While remote sensing is not the sole solution, it provides unique advantages for soil salinity-related studies at both regional and global scales. Full article
(This article belongs to the Section Biogeosciences Remote Sensing)
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Graphical abstract

Graphical abstract
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<p>Soil salinity modeling and prediction process based on digital soil mapping.</p>
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<p>The study analyzes the types of remote sensing data and machine learning techniques employed in these 104 articles. The graphs on the left and right utilize pie charts to illustrate the percentage of each sensor type (used individually or in combination) and the various machine learning algorithms applied, respectively.</p>
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<p>Statistical characteristics of the metadata include modeling accuracy, validation accuracy, mean and maximum values of ECe, prediction accuracy across different regions, sample size, number of variables, and types of variables: (<b>a</b>) Range of accuracy of calibration model and validation model; (<b>b</b>) Range of R<sup>2</sup> values for modeling soil salinity in different regions; (<b>c</b>) Mean and maximum values of observed values; (<b>d</b>) Number of samples used to construct calibration model and validation model; (<b>e</b>) Number of variables and types involved in model construction. Rhombus are statistics for particular cases.</p>
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<p>Impact of metadata on prediction accuracy: (<b>a</b>) Relationship between calibration model and validation model; (<b>b</b>) Effect of number of observation samples on accuracy of calibration model; (<b>c</b>) Effect of sample observation depth on accuracy of calibration model; (<b>d</b>) Effect of number of variable types on accuracy of calibration model; (<b>e</b>) Relationship between number of variables and calibration model; (<b>f</b>) Effect of measurement time within year on calibration model; (<b>g</b>) Relationship between mean value of measurement values and accuracy of calibration model; (<b>h</b>) Relationship between maximum value of measurement values and accuracy of calibration model. Orange dots indicate significant relationships (<span class="html-italic">p</span> &lt; 0.05), black boxes indicate no significant relationships.</p>
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21 pages, 12597 KiB  
Article
Genome-Wide Identification and Expression Analysis of NAC Gene Family Members in Seashore Paspalum Under Salt Stress
by Xuanyang Wu, Xiaochen Hu, Qinyan Bao, Qi Sun, Pan Yu, Junxiang Qi, Zixuan Zhang, Chunrong Luo, Yuzhu Wang, Wenjie Lu and Xueli Wu
Plants 2024, 13(24), 3595; https://doi.org/10.3390/plants13243595 - 23 Dec 2024
Viewed by 721
Abstract
The NAC gene family plays a crucial role in plant growth, development, and responses to biotic and abiotic stresses. Paspalum Vaginatum, a warm-season turfgrass with exceptional salt tolerance, can be irrigated with seawater. However, the NAC gene family in seashore paspalum remains [...] Read more.
The NAC gene family plays a crucial role in plant growth, development, and responses to biotic and abiotic stresses. Paspalum Vaginatum, a warm-season turfgrass with exceptional salt tolerance, can be irrigated with seawater. However, the NAC gene family in seashore paspalum remains poorly understood. In this study, genome-wide screening and identification were conducted based on the NAC (NAM) domain hidden Markov model in seashore paspalum, resulting in the identification of 168 PvNAC genes. A phylogenetic tree was constructed, and the genes were classified into 18 groups according to their topological structure. The physicochemical properties of the PvNAC gene family proteins, their conserved motifs and structural domains, cis-acting elements, intraspecific collinearity analysis, GO annotation analysis, and protein–protein interaction networks were analyzed. The results indicated that the majority of PvNAC proteins are hydrophilic and predominantly localized in the nucleus. The promoter regions of PvNACs are primarily enriched with light-responsive elements, ABRE motifs, MYB motifs, and others. Intraspecific collinearity analysis suggests that PvNACs may have experienced a large-scale gene duplication event. GO annotation indicated that PvNAC genes were essential for transcriptional regulation, organ development, and responses to environmental stimuli. Furthermore, the protein interaction network predicted that PvNAC73 interacts with proteins such as BZIP8 and DREB2A to form a major regulatory hub. The transcriptomic analysis investigates the expression patterns of NAC genes in both leaves and roots under varying durations of salt stress. The expression levels of 8 PvNACs in roots and leaves under salt stress were examined and increased to varying degrees under salt stress. The qRT-PCR results demonstrated that the expression levels of the selected genes were consistent with the FPKM value trends observed in the RNA-seq data. This study established a theoretical basis for understanding the molecular functions and regulatory mechanisms of the NAC gene family in seashore paspalum under salt stress. Full article
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<p>Phylogenetic tree of the <span class="html-italic">PvNAC</span> gene family in seashore paspalum. Different colors represent distinct subgroups, with clustering indicating potential functional similarities among closely related genes within each clade.</p>
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<p>Chromosomal localization and syntenic relationships of <span class="html-italic">PvNAC</span> genes. The chromosomal distribution of the 168 <span class="html-italic">PvNAC</span> genes within the seashore paspalum genome is depicted. Each <span class="html-italic">PvNAC</span> gene is labeled according to its chromosomal location (<b>A</b>). The syntenic relationships are illustrated, with large-scale duplications indicated by orange lines connecting duplicated <span class="html-italic">NAC</span> gene pairs. The gray regions represent syntenic blocks, while the orange lines highlight the duplicated gene pairs, suggesting potential evolutionary events within the <span class="html-italic">NAC</span> gene family (<b>B</b>).</p>
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<p>Gene ontology (GO) enrichment analysis of differentially expressed genes (DGEs) in seashore paspalum. Comparative DEGs from L6 vs. R6 (<b>A</b>), L48 vs. R48 (<b>B</b>), and L120 vs. R120 (<b>C</b>) were analyzed via GO, with enriched terms in biological process, cellular component, and molecular function displayed as a histogram. The X-axis displayed the −log<sub>10</sub>(<span class="html-italic">p</span>-value), reflecting the statistical significance of the enriched GO terms of PvNAC, with higher values indicating greater significance of enrichment (<b>D</b>).</p>
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<p>Comprehensive Analysis of <span class="html-italic">PvNAC</span> Gene Expression Under 0.2 M NaCl Treatment. (<b>A</b>) This heatmap depicts the Pearson correlation coefficients (R<sup>2</sup>) between all experimental samples. Both the X and Y axes list the sample identifiers, while the color intensity represents the strength of the correlation, with a gradient from blue (low correlation) to dark red (high correlation). Darker shades indicate stronger positive correlations (R<sup>2</sup> approaching 1), facilitating the assessment of sample similarity and reproducibility. (<b>B</b>) The box plot illustrates the distribution of normalized <span class="html-italic">PvNAC</span> gene expression levels (log<sub>2</sub>(FPKM + 1)) across all samples. The X-axis categorizes the samples by their respective names, and the Y-axis quantifies the expression levels. Each box represents the interquartile range (IQR) with the median indicated by the horizontal line, while whiskers extend to the minimum and maximum values, excluding outliers. (<b>C</b>) This heatmap showcases the differential expression of <span class="html-italic">PvNAC</span> genes in leaf (L) and root (R) tissues at three distinct time points (6, 48, and 120 h) under 0.2 M NaCl treatment. Sample identifiers are denoted as L-6, L-48, and L-120 for leaves and R-6, R-48, and R-120 for roots. Expression levels are color-coded using a red-to-blue gradient, where red signifies upregulation and blue indicates downregulation relative to the 0 h control.</p>
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<p>Expression levels of <span class="html-italic">PvNAC</span> genes in roots and leaves under salt stress. (<b>A</b>–<b>H</b>) illustrate the trends of transcriptome and gene expression levels of NAC genes under salt stress<b>.</b> Transcriptome data were presented as Log2 fold changes of FPKM values, comparing treatments L-6, L-48, L-120, R-6, R-48, and R-120 against the control groups L-0 and R-0, respectively. The relative gene expression levels, as determined by qRT-PCR, were quantified using the Log<sub>2</sub>(2<sup>−ΔΔCt</sup>) method, further validating the trends in gene expression changes. Different letters above the bars indicated statistically significant differences determined by ANOVA <span class="html-italic">(p</span> &lt; 0.05). The presented data represent the means of three independent experiments, with error bars denoting the standard error.</p>
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<p>Protein–protein interaction network of PvNAC proteins. The network was constructed with a medium confidence threshold of 0.4. Node color intensity corresponds to the degree value, with darker shades indicating higher connectivity (more interactions). Triangles represent PvNAC proteins (the target proteins in this study), while circles denote their interacting partners. Solid gray lines between nodes indicate protein–protein interactions, with uniform line density and connection strength across the network.</p>
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