Search Results (412)

Cadmium (Cd) and lead (Pb) are the primary hazardous heavy metals that accumulate in crops and pose substantial risks to public health via the food chain. Limiting the migration of these toxic metals from contaminated environments to rice is the most direct and crucial remediation approach. Bioremediation with microorganisms has been extensively utilized for managing heavy metal contamination in the natural environment, and the interplay between microbes and crops is important to alleviate heavy metal stress. Here, we express Lpp-OmpA fused with two metal-binding domains (PbBD and MTT5) in the outer membrane of Deinococcus radiodurans to enhance both Cd and Pb adsorption. Our results showed that the recombinant strain LOPM, which displayed an increased tolerance to both Cd and Pb stress, exhibited a 4.9-fold higher Cd adsorption and 3.2-fold higher Pb adsorption compared to wild-type strain R1. After LOPM cells colonized the rice root, Cd content reduced to 47.0% in root and 43.4% in shoot; Pb content reduced to 55.4% in root and 26.9% in shoot, as compared to the plant’s exposure to Cd and Pb. In addition, cells of LOPM strain colonized on rice roots alleviate Cd- and Pb-induced oxidative stress by reducing ROS levels and enhancing antioxidant enzyme activities in rice. This study supplies a promising application of genetic-engineering extremophile bacteria in reducing heavy metal accumulation and toxicity in rice. Full article

Organo-sedimentary deposits that result from fine-grained sediment trapping, binding, and likely precipitation (of carbonate) by microbes in flat-mat, branching, and dome-shaped constructions are termed microbialites. They were first identified as stromatolites by paleontologists well before the discovery of cyanobacteria that build the same kinds of structures in contemporary settings around the world. Earth’s earliest life forms were prokaryotes (bacteria and bacteria-like forms) that reproduced under anaerobic conditions and later produced increasingly aerobic conditions. Stromatolites persisted through later Archean and Proterozoic times through the subsequent Phanerozoic to the present. At the start of the Cambrian Period 538 million years ago, stromatolites continued alongside rapidly diversifying plant and animal phyla during the Cambrian explosion of eukaryotic life, which have complex cells with internal structures and tissue-grade organization in multicellular taxa. The type locality exhibiting clear examples of stromatolite structures is conserved at Lester Park near Saratoga Springs in northeastern New York State. Paleontologist James Hall (1811–1898) was the first in 1884 to assign a Latin binomen (Cryptozoon proliferum) to stromatolite fossils from Lester Park. Thereafter, reports on formally named stromatolites proliferated, as did examples from virtually all subsequent geological time intervals including the Pleistocene Epoch. However, recognition that living cyanobacteria formed stromatolites identified as Cryptozoon took place much later in 1961 with the announcement by geologist Brian W. Logan (1933–2008) who described modern constructions in Hamlin Pool, Shark Bay, Western Australia. Initially, Shark Bay was regarded as a one-of-a-kind sanctuary for stromatolites living under restricted conditions with elevated levels of salinity that prohibited competition or grazing by eukaryotes. Most notably, among other settings with living stromatolites discovered and described since then are the Bahamas, East African rift lakes, Mexico’s Baja California, and saline lakes in Argentina. This report reviews the history of discoveries of modern-day stromatolites, more commonly called microbialites by biologists. All are predicated on the ground-breaking efforts of geologists and paleontologists who first described fossil stromatolites but were unaware of their living counterparts. The Lester Park locality is highlighted together with a master list of other North American localities that feature purported Cryptozoons. Full article

Organisms occupy diverse ecological niches worldwide, each with characteristics finely evolved for their environments. Crustaceans residing in deep-sea hydrothermal vents, recognized as one of Earth’s extreme environments, may have adapted to withstand severe conditions, including elevated temperatures and pressure. This study compares the exoskeletons of two vent crustaceans (bythograeid crab Austinograea sp. and squat lobster Munidopsis lauensis) with four coastal species (Asian paddle crabs, blue crab, hermit crab, and mantis shrimp) to identify traits influenced by vent environments. The goal was to identify distinctive exoskeletal characteristics commonly observed in vent crustaceans, resulting from their exposure to severe abiotic factors, including elevated temperatures and pressures, found in vent environments. Results show that the exoskeletons of vent crustaceans demonstrated significantly enhanced thermal stability compared to coastal species. These vent crustaceans consistently featured exoskeletons characterized by a reduced proportion of volatile components, such as water, and an increased proportion of CaCO₃, compared with coastal crustaceans. Furthermore, vent crustaceans lacked carotenoid pigments that had low heat resistance. However, no apparent differences were observed in the mechanical properties. Our findings suggest that the similar composition of exoskeletons in vent crustaceans evolved convergently to withstand high temperatures. Full article

Extremophiles, throughout evolutionary time, have evolved a plethora of unique strategies to overcome hardships associated with the environments they are found in. Modifying their genome, showing a bias towards certain amino acids, redesigning their proteins, and enhancing their membranes and other organelles with specialised chemical compounds are only some of those strategies. Scientists can utilise such attributes of theirs for a plethora of biotechnological and astrobiological applications. Moreover, the rigorous study of such microorganisms regarding their evolution and ecological niche can offer deep insight into science’s most paramount inquiries such as how life originated on Earth and whether we are alone in the universe. The intensification of studies involving extremophiles in the future can prove to be highly beneficial for humanity, even potentially ameliorating modern problems such as those related to climate change while also expanding our knowledge about the complex biochemical reactions that ultimately resulted in life as we know it today. Full article

Marine diatoms are essential members of both phytoplankton and phytobenthic communities, able to colonize submerged artificial and natural surfaces, contributing to benthic microbial biomass. Diatoms have developed different adaptative mechanisms to cope with various environmental stresses, including high concentrations of heavy metals. The aim of this study was to investigate the arsenic resistance of diatoms, isolated from microbial mats collected from an arsenic-rich brackish pond (Lake Mergolo della Tonnara, Italy), by evaluating (i) their ability to form biofilms in the presence of arsenite (As^III) or arsenate (As^V), and (ii) the variations in the photosynthetic pigments’ contents (i.e., chlorophyll a and c) in their biofilms. The mats were dominated by members of the genus Amphora, and isolates were affiliated with species of A. capitellata, A. coffeaeformis, and A. montana. The strains grew better in the presence of As^V than As^III, which is generally less toxic. After seven days of incubation, each strain exhibited a different ability to form biofilms on glass surfaces in the presence of arsenic (25 ppm), with A. montana strain 27 being the most effective (86%) in the presence of As^III, and A. coffeaeformis strain 26 (74%) with As^V. Photosynthetic pigment levels (chlorophyll a and c) differed in each biofilm, being poorly reduced by As^III in strain 27, and by As^V in strain 26, indicating a species-specific response to arsenic stress. Our results indicated that Amphora species thriving in this environment can form biofilms as an As-resistance mechanism, maintain their levels of photosynthetic pigments, and support the functioning of the pond ecosystem, with A. montana being favored in the presence of As^III, whereas A. coffeaeformis 26 in the presence of As^V. As producers of biofilms, these strains could be useful to develop new strategies to remediate arsenic pollution. Full article

Cold-active lipase from the psychrophilic bacterial strain Psychrobacter SC65A.3 isolated from Scarisoara Ice Cave (Romania) was cloned and characterized as an extremophilic biocatalyst for silybin acylation. Structural analyses highlighted conserved motifs confirming a functional lipase and the presence of primary structure elements for catalysis at low temperatures. The recombinant enzyme (PSL2) heterologously expressed in Escherichia coli was purified in one step by affinity chromatography with a yield of 12.08 ± 1.72 µg L⁻¹ of culture and a specific activity of 20.1 ± 3.2 U mg⁻¹ at 25 °C. Functional characterization of PSL2 showed a neutral (7.2) optimal pH and a high thermal stability up to 90 °C. Also, this lipase was stable in the presence of different organic solvents, with 60% residual activity when using 20% DMSO. Kinetic measurements indicated performant catalytic efficiency of PSL2 for different short and long chain fatty acids, with Km in the mM range. The catalytic activity of PSL2 was assessed for silybin acylation with various fatty acids and fatty acid methyl esters, demonstrating a 90% silybin conversion when methyl decanoate ester was used. This result clearly highlights the biocatalytic capability of this new cold-active lipase. Full article

This study explores the encapsulation in alginate/bentonite beads of two metal(loid)-resistant bacterial consortia (consortium A: Pseudomonas sp. and Bacillus sp.; consortium B: Pseudomonas sp. and Bacillus sp.) from the Atacama Desert (northern Chile) and Antarctica, and their influence on physiological traits of Chenopodium quinoa growing in metal(loid)-contaminated soils. The metal(loid) sorption capacity of the consortia was determined. Bacteria were encapsulated using ionic gelation and were inoculated in soil of C. quinoa. The morphological variables, photosynthetic pigments, and lipid peroxidation in plants were evaluated. Consortium A showed a significantly higher biosorption capacity than consortium B, especially for As and Cu. The highest viability of consortia was achieved with matrices A1 (3% alginate and 2% bentonite) and A3 (3% alginate, 2% bentonite and 2.5% LB medium) at a drying temperature of 25 °C and storage at 4 °C. After 12 months, the highest viability was detected using matrix A1 with a concentration of 10⁶ CFU g⁻¹. Further, a greenhouse experiment using these consortia in C. quinoa plants showed that, 90 days after inoculation, the morphological traits of both consortia improved. Chemical analysis of metal(loid) contents in the leaves indicated that consortium B reduced the absorption of Cu to 32.1 mg kg⁻¹ and that of Mn to 171.9 mg kg⁻¹. Encapsulation resulted in a significant increase in bacterial survival. This highlights the benefits of using encapsulated microbial consortia from extreme environments, stimulating the growth of C. quinoa, especially in soils with metal(loid) levels that can be a serious constraint for plant growth. Full article

Although the Taklimakan Desert lacks the necessary nutrients and conditions to support an extensive ecosystem, it is a treasure trove of extremophile resources with special structures and functions. We analyzed the bacterial communities using oligotrophic medium and velvet cloth replicate combined with an extended culture duration. We isolated numerous uncultured microorganisms and rare microorganisms belonging to genera not often isolated or recently described, such as Aliihoeflea, Halodurantibacterium, and Indioceanicola. A total of 669 strains were isolated from the soil of the Taklimakan Desert, which were classified into 5 phyla, 7 classes, 25 orders, 42 families, 83 genera, and 379 species. Among them, 148 strains were potential new species. Our data show that even when working with samples from extreme environments, simple approaches are still useful for cultivating stubborn microbes. Through comparing the isolation effects of different nutrient levels on microbial diversity and abundance, the results show that reducing the nutrient level of the medium was more conducive to improving the culturability of microorganisms in low-nutrient environments, while the high-nutrient medium was more suitable for the isolation of dominant fast-growing strains. This study helps to better reflect the diversity of microbial resources and lays a foundation for the further research and utilization of soil microbial resources in the Taklimakan Desert. Full article

Anthropogenic activities have led to hydrocarbon spills, and while traditional bioremediation methods are costly and time-consuming, recent research has focused on engineered enzymes for managing pollutant. The potential of enzymes for resolving wax flow problems in the petroleum industry remains unexplored. This paper offers a comprehensive review of the current state of research activities related to the bioremediation of petroleum-polluted sites and the biodegradation of specific petroleum hydrocarbons. The assayed enzymes that took part in the degradation were discussed in detail. Lipase, laccase, alkane hydroxylase, alcohol dehydrogenase, esterase, AlkB homologs and cytochrome P450 monooxygenase are among the enzymes responsible for the degradation of more than 50% of the hydrocarbons in contaminated soil and wastewater and found to be active on carbon C8 to C40. The possible biodegradation mechanism of petroleum hydrocarbons was also elucidated. The enzymes’ primary metabolic pathways include terminal, subterminal, and ω-oxidation. Next, given the successful evidence of the hydrocarbon treatment efficiency, the authors analyzed the opportunity for the enzymatic degradation approach if it were to be applied to a different scenario: managing wax deposition in petroleum-production lines. With properties such as high transformation efficiency and high specificity, enzymes can be utilized for the treatment of viscous heavy oil for transportability, evidenced by the 20 to 99% removal of hydrocarbons. The challenges associated with the new approach are also discussed. The production cost of enzymes, the characteristics of hydrocarbons and the operating conditions of the production line may affect the biocatalysis reaction to some extent. However, the challenges can be overcome by the usage of extremophilic enzymes. The combination of technological advancement and deployment strategies such as the immobilization of a consortium of highly thermophilic and halotolerant enzymes is suggested. Recovering and reusing enzymes offers an excellent strategy to improve the economics of the technology. This paper provides insights into the opportunity for the enzymatic degradation approach to be expanded for wax deposition problems in pipelines. Full article

Extremophiles, organisms thriving in extreme environments such as hot springs, deep-sea hydrothermal vents, and hypersaline ecosystems, have garnered significant attention due to their remarkable adaptability and biotechnological potential. This review presents recent advancements in isolating and characterizing extremophiles, highlighting their applications in enzyme production, bioplastics, environmental management, and space exploration. The unique biological mechanisms of extremophiles offer valuable insights into life’s resilience and potential uses in industry and astrobiology. Full article

Exploring extremotolerant and extremophilic microalgae opens new frontiers in sustainable biotechnological applications. These microorganisms thrive in extreme environments and exhibit specialized metabolic pathways, making them valuable for various industries. The study focuses on the ecological adaptation and biotechnological potential of these microalgae, highlighting their ability to produce bioactive compounds under stress conditions. The literature reveals that extremophilic microalgae can significantly enhance biomass production, reduce contamination risks in large-scale systems, and produce valuable biomolecules such as carotenoids, lipids, and proteins. These insights suggest that extremophilic microalgae have promising applications in food, pharmaceutical, cosmetic, and biofuel industries, offering sustainable and efficient alternatives to traditional resources. The review concludes that further exploration and utilization of these unique microorganisms can lead to innovative and environmentally friendly solutions in biotechnology. Full article

The continuous dumping of industrial solid wastes into the immediate environment is incommodious since these waste materials cause pollution and serious hazards to human health. In addition, these solid wastes are complex and consist of toxic chemical substances, heavy metals, and valuable metals, hence warranting treatment before disposal. Bioleaching is a green and sustainable technology for the solubilization and mobilization of metals from solid matrices. The leaching efficacy is contingent on the types and physiology of the organisms, the elemental content of the solid wastes, and the presence of appropriate bioprocess parameters at optimum conditions. Extremophilic microbes, including thermophiles, acidophiles, alkaliphiles, and halophiles, are recognized as excellent biological agents for the efficient bioextraction of metals from industrial solid wastes due to their aptitude for survival under harsh bioleaching conditions. Therefore, this review provides insights into the employability of extremophilic microorganisms as a biofactory for the recovery of valuable metals from various industrial solid wastes. More so, it discusses the sustainability of the bioleaching technique in terms of its life cycle assessment (LCA) and techno-economic analysis. Full article

Radiation protection is an important field of study, as it relates to human health and environmental safety. Radiation-resistance mechanisms in extremophiles are a research hotspot, as this knowledge has great application value in bioremediation and development of anti-radiation drugs. Mount Everest, an extreme environment of high radiation exposure, harbors many bacterial strains resistant to radiation. However, owing to the difficulties in studying them because of the extreme terrain, many remain unexplored. In this study, a novel species (herein, S7-12^T) was isolated from the moraine of Mount Everest, and its morphology and functional and genomic characteristics were analyzed. The strain S7-12^T is white in color, smooth and rounded, non-spore-forming, and non-motile and can survive at a UV intensity of 1000 J/m², showing that it is twice as resistant to radiation as Deinococcus radiodurans. Radiation-resistance genes, including IbpA and those from the rec and CspA gene families, were identified. The polyphasic taxonomic approach revealed that the strain S7-12^T (=KCTC 59114T =GDMCC 1.3458T) is a new species of the genus Knoellia and is thus proposed to be named glaciei. The in-depth study of the genome of strain S7-12^T will enable us to gain further insights into its potential use in radiation resistance. Understanding how microorganisms resist radiation damage could reveal potential biomarkers and therapeutic targets, leading to the discovery of potent anti-radiation compounds, thereby improving human resistance to the threat of radiation. Full article

Climate change and the scarcity of primary resources are driving the development of new, more renewable and environmentally friendly industrial processes. As part of this green chemistry approach, extremozymes (extreme microbial enzymes) can be used to replace all or part of the chemical synthesis stages of traditional industrial processes. At present, the production of these enzymes is limited by the cellular chassis available. The production of a large number of extremozymes requires extremophilic cellular chassis, which are not available. This is particularly true of halophilic extremozymes. The aim of this review is to present the current potential and challenges associated with the development of a haloarchaea-based cellular chassis. By overcoming the major obstacle of the limited number of genetic tools, it will be possible to propose a robust cellular chassis for the production of functional halophilic enzymes that can participate in the industrial transition of many sectors. Full article