Nothing Special   »   [go: up one dir, main page]

You seem to have javascript disabled. Please note that many of the page functionalities won't work as expected without javascript enabled.
 
 
Sign in to use this feature.

Years

Between: -

Subjects

remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline

Journals

remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline

Article Types

Countries / Regions

remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline

Search Results (19,988)

Search Parameters:
Keywords = efficient detection

Order results
Result details
Results per page
Select all
Export citation of selected articles as:
24 pages, 2020 KiB  
Article
Enhanced Long-Range Network Performance of an Oil Pipeline Monitoring System Using a Hybrid Deep Extreme Learning Machine Model
by Abbas Kubba, Hafedh Trabelsi and Faouzi Derbel
Future Internet 2024, 16(11), 425; https://doi.org/10.3390/fi16110425 (registering DOI) - 17 Nov 2024
Abstract
Leak detection in oil and gas pipeline networks is a climacteric and frequent issue in the oil and gas field. Many establishments have long depended on stationary hardware or traditional assessments to monitor and detect abnormalities. Rapid technological progress; innovation in engineering; and [...] Read more.
Leak detection in oil and gas pipeline networks is a climacteric and frequent issue in the oil and gas field. Many establishments have long depended on stationary hardware or traditional assessments to monitor and detect abnormalities. Rapid technological progress; innovation in engineering; and advanced technologies providing cost-effective, rapidly executed, and easy to implement solutions lead to building an efficient oil pipeline leak detection and real-time monitoring system. In this area, wireless sensor networks (WSNs) are increasingly required to enhance the reliability of checkups and improve the accuracy of real-time oil pipeline monitoring systems with limited hardware resources. The real-time transient model (RTTM) is a leak detection method integrated with LoRaWAN technology, which is proposed in this study to implement a wireless oil pipeline network for long distances. This study will focus on enhancing the LoRa network parameters, e.g., node power consumption, average packet loss, and delay, by applying several machine learning techniques in order to optimize the durability of individual nodes’ lifetimes and enhance total system performance. The proposed system is implemented in an OMNeT++ network simulator with several frameworks, such as Flora and Inet, to cover the LoRa network, which is used as the system’s network infrastructure. In order to implement artificial intelligence over the FLoRa network, the LoRa network was integrated with several programming tools and libraries, such as Python script and the TensorFlow libraries. Several machine learning algorithms have been applied, such as the random forest (RF) algorithm and the deep extreme learning machine (DELM) technique, to develop the proposed model and improve the LoRa network’s performance. They improved the LoRa network’s output performance, e.g., its power consumption, packet loss, and packet delay, with different enhancement ratios. Finally, a hybrid deep extreme learning machine model was built and selected as the proposed model due to its ability to improve the LoRa network’s performance, with perfect prediction accuracy, a mean square error of 0.75, and an exceptional enhancement ratio of 39% for LoRa node power consumption. Full article
(This article belongs to the Topic Advances in Wireless and Mobile Networking)
Show Figures

Figure 1

Figure 1
<p>Description of a LoRa network: (<b>a</b>) LoRa network architecture; (<b>b</b>) LoRa stack protocol.</p>
Full article ">Figure 2
<p>The network design of the proposed system. (a) RTTM-based LoRaWAN monitoring system; (<b>b</b>) LoRa network design based on OMNet++.</p>
Full article ">Figure 3
<p>Deep extreme learning machine architecture.</p>
Full article ">Figure 4
<p>Workflow of the LoRa-network-based hybrid DELM model.</p>
Full article ">Figure 5
<p>Comparative analysis of LoRa performance: (<b>a</b>) power consumption representation; (<b>b</b>) packet delay representation; (<b>c</b>) packet loss representation.</p>
Full article ">
14 pages, 7924 KiB  
Article
Estimation of Mango Fruit Production Using Image Analysis and Machine Learning Algorithms
by Liliana Arcila-Diaz, Heber I. Mejia-Cabrera and Juan Arcila-Diaz
Informatics 2024, 11(4), 87; https://doi.org/10.3390/informatics11040087 (registering DOI) - 16 Nov 2024
Viewed by 331
Abstract
Mango production is fundamental to the agricultural economy, generating income and employment in various communities. Accurate estimation of its production optimizes the planning and logistics of harvesting; traditionally, manual methods are inefficient and prone to errors. Currently, machine learning, by handling large volumes [...] Read more.
Mango production is fundamental to the agricultural economy, generating income and employment in various communities. Accurate estimation of its production optimizes the planning and logistics of harvesting; traditionally, manual methods are inefficient and prone to errors. Currently, machine learning, by handling large volumes of data, emerges as an innovative solution to enhance the precision of mango production estimation. This study presents an analysis of mango fruit detection using machine learning algorithms, specifically YOLO version 8 and Faster R-CNN. The present study employs a dataset consisting of 212 original images, annotated with a total of 9604 labels, which has been expanded to include 2449 additional images and 116,654 annotations. This significant increase in dataset size notably enhances the robustness and generalization capacity of the model. The YOLO-trained model achieves an accuracy of 96.72%, a recall of 77.4%, and an F1 Score of 86%, compared to the results of Faster R-CNN, which are 98.57%, 63.80%, and 77.46%, respectively. YOLO demonstrates greater efficiency, being faster in training, consuming less memory, and utilizing fewer CPU resources. Furthermore, this study has developed a web application with a user interface that facilitates the uploading of images from mango trees considered samples. The YOLO-trained model detects the fruits of each tree in the representative sample and uses extrapolation techniques to estimate the total number of fruits across the entire population of mango trees. Full article
(This article belongs to the Section Machine Learning)
Show Figures

Figure 1

Figure 1
<p>Method for estimating mango fruit production.</p>
Full article ">Figure 2
<p>Sample images from the fruit tree production stage dataset.</p>
Full article ">Figure 3
<p>Labeled sample images from the fruit tree production stage dataset.</p>
Full article ">Figure 4
<p>The performance of the model trained over 100 epochs: (<b>a</b>) YOLO version 8; (<b>b</b>) Faster R-CNN.</p>
Full article ">Figure 5
<p>The detection of mango fruits with the trained models.</p>
Full article ">Figure 6
<p>Software architecture of application.</p>
Full article ">Figure 7
<p>Application interface: (<b>a</b>) initial data entry; (<b>b</b>) image upload; (<b>c</b>) estimation results.</p>
Full article ">
22 pages, 7188 KiB  
Review
In Silico Genomic Analysis of Avian Influenza Viruses Isolated From Marine Seal Colonies
by Klaudia Chrzastek and Darrell R. Kapczynski
Pathogens 2024, 13(11), 1009; https://doi.org/10.3390/pathogens13111009 (registering DOI) - 16 Nov 2024
Viewed by 400
Abstract
Genetically diverse avian influenza viruses (AIVs) are maintained in wild aquatic birds with increasingly frequent spillover into mammals, yet these represent a small proportion of the overall detections. The isolation of AIVs in marine mammals, including seals, has been reported sporadically over the [...] Read more.
Genetically diverse avian influenza viruses (AIVs) are maintained in wild aquatic birds with increasingly frequent spillover into mammals, yet these represent a small proportion of the overall detections. The isolation of AIVs in marine mammals, including seals, has been reported sporadically over the last 45 years. Prior to 2016, all reports of AIVs detected in seals were of low-pathogenicity AIVs. In spite of this, the majority of reported AIV outbreaks caused fatal respiratory diseases, with harbor seals particularly susceptible to infection. The H5 clade 2.3.4.4b highly pathogenic AIV (HPAIV) was detected in seals for the first time in 2016. Recently, many cases of mass seal die-offs have occurred because of 2.3.4.4b HPAIV and are attributed to spillover from wild bird species. The potential for seal-to-seal transmission has been considered after the mass mortality of southern elephant seals off the coast of Argentina. Close contact between seals and wild birds, the rapid evolution of H5N1 AIVs, and the possibility of efficient mammal-to-mammal transmission are increasing concerns due to the potential for the establishment of a marine mammal reservoir and public health risks associated with the pandemic potential of the virus. This manuscript details the detection of AIVs in the seal population, comparing interesting features of various subtypes with an emphasis on avian-to-mammal-to-mammal transmission. Phylogenetic characterizations of the representative seal isolates were performed to demonstrate the relationships within the different virus isolates. Furthermore, we demonstrate that the reassortment events between different LPAIVs occurred before and after the viruses reached the seal population. The reassortment of viral segments plays an important role in the evolution of influenza viruses. Taken together, these data report on the 45 year history between seals and AIVs. Full article
(This article belongs to the Special Issue Pathogenesis, Epidemiology, and Control of Animal Influenza Viruses)
Show Figures

Figure 1

Figure 1
<p>The Horsey gray seals colony, United Kingdom, February 2024. Photography by KC.</p>
Full article ">Figure 2
<p>Phylogenetic tree of the HA segment of the H4N5 avian influenza virus isolate obtained from seals in 1982 (marked in red) and representative wild bird isolates available in the GISAID database. Full-length HA segments of H4Nx bird isolates available in the GISAID (n = 3023) were retrieved, and representative sequences (n = 189) were selected based on the sequence identity at the 97% level using the CD-HIT package. The isolates that clustered along with the H4N5 seal isolate (n = 70) were selected to construct the phylogenetic tree of the HA. The sequences were aligned using MUSCLE on MEGA 11.03.13. The GTR nucleotide substitution model, with an among-site rate variation model using a discrete gamma distribution, was used. Bootstrap support values were generated using 500 rapid bootstrap replicates.</p>
Full article ">Figure 3
<p>Phylogenetic tree of the PB2 segment of the avian influenza viruses found in seal populations over the last 45 years. The analysis includes the following 72 isolates available from GISAID (as of March 2024): 58 seal isolates of different subtypes isolated between 1980 and 2023 and recently isolated H5N1 clade 2.3.4.4b viruses from 8 sea lions, 3 dolphins, and 3 porpoises. The nucleotide sequences of the PB2 segment were aligned using MUSCLE software and GTR nucleotide substitution model, with an among-site rate variation model using a discrete gamma distribution. Bootstrap support values were generated using 500 rapid bootstrap replicates.</p>
Full article ">Figure 4
<p>Phylogenetic tree of the PB1 segment of the avian influenza viruses found in seal populations over the last 45 years. The analysis includes PB1 segments that are available from GISAID (as of March 2024) and which were isolated between 1980 and 2023 and recently isolated H5N1 clade 2.3.4.4b viruses from 8 sea lions, 3 dolphins, and 3 porpoises. The nucleotide sequences of the PB1 segment were aligned using MUSCLE software and the GTR nucleotide substitution model, with an among-site rate variation model using a discrete gamma distribution. Bootstrap support values were generated using 500 rapid bootstrap replicates.</p>
Full article ">Figure 5
<p>Phylogenetic tree of the MP segment of the avian influenza viruses found in seal populations over the last 45 years. The analysis includes MP segments that are available from GISAID (as of March 2024) and that were isolated between 1980 and 2023 and recently isolated H5N1 clade 2.3.4.4b viruses from 8 sea lions, 3 dolphins, and 3 porpoises. The nucleotide sequences of the MP segment were aligned using MUSCLE software and the GTR nucleotide substitution model, with an among-site rate variation model using a discrete gamma distribution. Bootstrap support values were generated using 500 rapid bootstrap replicates.</p>
Full article ">Figure 6
<p>Phylogenetic tree of the PA segment of the avian influenza viruses found in seal populations over the last 45 years. The analysis includes PA segments that are available from GISAID (as of March 2024) that were isolated between 1980 and 2023 and recently isolated H5N1 clade 2.3.4.4b viruses from 8 sea lions, 3 dolphins, and 3 porpoises. The nucleotide sequences of the PA segment were aligned using MUSCLE software and the GTR nucleotide substitution model, with an among-site rate variation model using a discrete gamma distribution. Bootstrap support values were generated using 500 rapid bootstrap replicates.</p>
Full article ">
12 pages, 8606 KiB  
Article
CO2 Interaction Mechanism of SnO2-Based Sensors with Respect to the Pt Interdigital Electrodes Gap
by Adelina Stanoiu, Alexandra Corina Iacoban, Catalina Gabriela Mihalcea, Ion Viorel Dinu, Ovidiu Gabriel Florea, Ioana Dorina Vlaicu and Cristian Eugen Simion
Chemosensors 2024, 12(11), 238; https://doi.org/10.3390/chemosensors12110238 (registering DOI) - 16 Nov 2024
Viewed by 263
Abstract
The tuning sensitivity towards CO2 detection under in-field-like conditions was investigated using SnO2-sensitive material deposited onto Al2O3 substrates provided with platinum electrodes with interdigital gaps of 100 µm and 30 µm. X-ray diffraction, low-magnification and high-resolution transmission [...] Read more.
The tuning sensitivity towards CO2 detection under in-field-like conditions was investigated using SnO2-sensitive material deposited onto Al2O3 substrates provided with platinum electrodes with interdigital gaps of 100 µm and 30 µm. X-ray diffraction, low-magnification and high-resolution transmission electron microscopy, and electrical and contact potential difference investigations were employed to understand the sensing mechanism involved in CO2 detection. The morpho-structural analysis revealed that the SnO2 nanoparticles exhibit well-defined facets along the (110) and (101) crystallographic planes. Complex phenomenological investigations showed that moisture significantly affects the gas sensing performance. The experimental results corroborated the literature evidence, highlighting the importance of Pt within the interdigital electrodes subsequently reflected in the increase in the CO2 sensing performance with the decrease in the interdigital gap. The catalytic efficiency is explained by the distribution of platinum at the gas-Pt-SnO2 three-phase boundary, which is critical for enhancing the sensor performance. Full article
(This article belongs to the Special Issue Advanced Chemical Sensors for Gas Detection)
Show Figures

Graphical abstract

Graphical abstract
Full article ">Figure 1
<p>Gas Mixing System provided with a Kelvin probe involved in DC and contact potential difference measurements (<b>a</b>), a sensor chamber (<b>b</b>), and a PC dedicated to evaluation and control (<b>c</b>).</p>
Full article ">Figure 2
<p>XRD pattern of SnO<sub>2</sub>.</p>
Full article ">Figure 3
<p>TEM image of SnO<sub>2</sub> (<b>a</b>) and the corresponding SAED pattern, revealing the tetragonal structure of SnO<sub>2</sub> (<b>b</b>).</p>
Full article ">Figure 4
<p>HRTEM images showing faceted nanoparticles having different dimensions.</p>
Full article ">Figure 5
<p>SnO<sub>2</sub> nanoparticles size distribution histogram fitted using a log-normal function.</p>
Full article ">Figure 6
<p>The dependence of the sensor signal on the operating temperature (<b>a</b>), the behaviour of the electrical resistance in the atmosphere with variable RH and CO<sub>2</sub> concentrations for an operating temperature of 350 °C (<b>b</b>), and the sensor signal to CO<sub>2</sub> for SnO<sub>2</sub> 100 µm versus SnO<sub>2</sub> 30 µm (<b>c</b>,<b>d</b>).</p>
Full article ">Figure 7
<p>CO<sub>2</sub> influence over the potential changes: SnO<sub>2</sub> 100 µm (<b>a</b>) and SnO<sub>2</sub> 30 µm (<b>b</b>) for T<sub>op</sub> = 350 °C and 50% RH.</p>
Full article ">Figure 8
<p>Schematic representation of the sensitive structure based on SnO<sub>2</sub> deposited on a substrate with Pt electrodes with different interdigital gaps L (<b>a</b>), energy band bending (<b>b</b>), and the equivalent electrical circuit (<b>c</b>).</p>
Full article ">Figure 9
<p>Planar substrate sensor overview. Side a represents the Pt heater meander (<b>a</b>) and sensor components parts (<b>b</b>); Side b1 represents the interdigital electrodes with a 100 μm gap (<b>c</b>); Side b2 represents the interdigital electrodes with a 30 μm gap (<b>d</b>) and a cross-section of the sensor (<b>e</b>).</p>
Full article ">
15 pages, 7465 KiB  
Article
Development of a Real-Time PCR Assay for the Detection of Francisella spp. and the Identification of F. tularensis subsp. mediasiatica
by Alexandr Shevtsov, Ayan Dauletov, Uinkul Izbanova, Alma Kairzhanova, Nailya Tursunbay, Vladimir Kiyan and Gilles Vergnaud
Microorganisms 2024, 12(11), 2345; https://doi.org/10.3390/microorganisms12112345 (registering DOI) - 16 Nov 2024
Viewed by 316
Abstract
Tularemia is an acute infectious disease classified as a natural focal infection, requiring continuous monitoring of both human and animal morbidity, as well as tracking of pathogen circulation in natural reservoirs and vectors. These efforts are essential for a comprehensive prevention and containment [...] Read more.
Tularemia is an acute infectious disease classified as a natural focal infection, requiring continuous monitoring of both human and animal morbidity, as well as tracking of pathogen circulation in natural reservoirs and vectors. These efforts are essential for a comprehensive prevention and containment strategy. The causative agent, Francisella tularensis, comprises three subspecies—tularensis, holarctica, and mediasiatica—which differ in their geographic distribution and virulence. The ability to directly detect the pathogen and differentiate between subspecies has enhanced diagnostics and allowed a more accurate identification of circulation areas. Real-time PCR protocols for identification of F. tularensis subspecies tularensis and holarctica have been developed, utilizing specific primers and probes that target unique genomic regions. In this study, we present the development of a new real-time PCR assay for the detection of Francisella spp. and differentiation of F. tularensis subsp. mediasiatica. The specificity of the assay was tested on DNA from 86 bacterial species across 31 families unrelated to Francisella spp., as well as on DNA collections of F. tularensis subsp. mediasiatica and F. tularensis subsp. holarctica. The limit of detection (LOD95%) for real-time PCR in detecting Francisella spp. was 0.297 fg (0.145 genomic equivalents, GE) for holarctica DNA and 0.733 fg (0.358 GE) for mediasiatica DNA. The LOD95% for subspecies differential identification of mediasiatica was 8.156 fg (3.979, GE). The high sensitivity and specificity of these developed protocols enable direct detection of pathogens in biological and environmental samples, thereby improving the efficiency of tularemia surveillance in Kazakhstan. Full article
(This article belongs to the Section Molecular Microbiology and Immunology)
Show Figures

Figure 1

Figure 1
<p>Primers design for identification of <span class="html-italic">F. tularensis</span> subsp. <span class="html-italic">mediasiatica.</span> (<b>A</b>) Aligned genomic fragments of <span class="html-italic">F. novicida</span> and of the three <span class="html-italic">F. tularensis</span> subspecies representatives used for primer selection for the subspecies identification of <span class="html-italic">mediasiatica</span>. (<b>B</b>) The alignment of target fragments from all circular genomes of the <span class="html-italic">F. tularensis</span> subsp. <span class="html-italic">mediasiatica</span> and two sequences from the genomes of the subspecies <span class="html-italic">holarctica</span>, <span class="html-italic">tularensis</span>, and <span class="html-italic">F. novicida</span>.</p>
Full article ">Figure 2
<p>Sensitivity testing of real-time PCR for <span class="html-italic">Francisella</span> spp. detection and subspecies differentiation of <span class="html-italic">F. tularensis</span> subsp. <span class="html-italic">mediasiatica</span>. qPCR assays were performed on <span class="html-italic">Francisella</span> spp. samples using 4-fold serial dilutions ranging from 1,000,000 to 0.015 copies. (<b>A</b>) Real-time PCR results for the detection of <span class="html-italic">Francisella</span> spp. using <span class="html-italic">F. tularensis</span> subsp. <span class="html-italic">holarctica</span> DNA (Primers/TaqMan: isftu-2_F_242, isftu-2_R_396 and isftu-2_Probes_331). (<b>B</b>) Real-time PCR results for the detection of <span class="html-italic">Francisella</span> spp. using <span class="html-italic">F. tularensis</span> subsp. <span class="html-italic">mediasiatica</span> DNA (Primers/TaqMan: isftu-2_F_242, isftu-2_R_396 and isftu-2_Probes_331). (<b>C</b>) Real-time PCR results for the subspecies differentiation of <span class="html-italic">F. tularensis</span> subsp. <span class="html-italic">mediasiatica</span> (Primers/TaqMan: FtM_452000_F, FtM_452000_R and FtM_452000_probe). Each sample was tested in triplicate. The horizontal red line indicates the fluorescence threshold.</p>
Full article ">Figure 3
<p>Standard curves were generated for three independent real-time PCR reactions: (<b>A</b>) species identification using <span class="html-italic">Francisella tularensis</span> subsp. <span class="html-italic">holarctica</span> samples, (<b>B</b>) species identification using <span class="html-italic">F. tularensis</span> subsp. <span class="html-italic">mediasiatica</span> samples, and (<b>C</b>) subspecies identification of <span class="html-italic">F. tularensis</span> subsp. <span class="html-italic">mediasiatica</span>. For each reaction, 16-fold serial dilutions of the samples were performed, starting with concentrations of 2.05 ng (1,000,000 genome equivalents, GE), 0.12 ng (62,500 GE), 8 pg (3906 GE), 0.5 pg (244 GE), 31.2 fg (15.2 GE), and 1.95 fg (0.95 GE).</p>
Full article ">
21 pages, 10985 KiB  
Article
A Novel Multi-Scale Feature Enhancement U-Shaped Network for Pixel-Level Road Crack Segmentation
by Jing Wang, Benlan Shen, Guodong Li, Jiao Gao and Chao Chen
Electronics 2024, 13(22), 4503; https://doi.org/10.3390/electronics13224503 (registering DOI) - 16 Nov 2024
Viewed by 240
Abstract
Timely and accurate detection of pavement cracks, the most common type of road damage, is essential for ensuring road safety. Automatic image segmentation of cracks can accurately locate their pixel positions. This paper proposes a Multi-Scale Feature Enhanced U-shaped Network (MFE-UNet) for pavement [...] Read more.
Timely and accurate detection of pavement cracks, the most common type of road damage, is essential for ensuring road safety. Automatic image segmentation of cracks can accurately locate their pixel positions. This paper proposes a Multi-Scale Feature Enhanced U-shaped Network (MFE-UNet) for pavement crack detection. This network model uses a Residual Detail-Enhanced Block (RDEB) instead of a conventional convolution in the encoder–decoder process. The block combines Efficient Multi-Scale Attention to enhance its feature extraction performance. The Multi-Scale Gating Feature Fusion (MGFF) is incorporated into the skip connections, enhancing the fusion of multi-scale features to capture finer crack details while maintaining rich semantic information. Furthermore, we created a pavement crack image dataset named China_MCrack, consisting of 1500 images collected from road surfaces using smartphone-mounted motorbikes. The proposed network was trained and tested on the China_MCrack, DeepCrack, and Crack-Forest datasets, with additional generalization experiments on the BochumCrackDataset. The results were compared with those of the U-Net model, ResUNet, and Attention U-Net. The experimental results show that the proposed MFE-UNet model achieves accuracies of 82.95%, 91.71%, and 69.02% on three datasets, namely, China_MCrack, DeepCrack, and Crack-Forest datasets, respectively, and the F1_score is improved by 1–4% compared with other networks. Experimental results demonstrate that the proposed method is effective in detecting cracks at the pixel level. Full article
(This article belongs to the Special Issue Emerging Technologies in Computational Intelligence)
Show Figures

Figure 1

Figure 1
<p>Network architecture of MFE-UNet.</p>
Full article ">Figure 2
<p>The architecture of RDEB.</p>
Full article ">Figure 3
<p>The derivation of HDC.</p>
Full article ">Figure 4
<p>The architecture of EMA.</p>
Full article ">Figure 5
<p>The architecture of MGFF.</p>
Full article ">Figure 6
<p>Example of manually labeled pixels using the Labelme Image Annotation tool.</p>
Full article ">Figure 7
<p>Labelme labels the image and result: (<b>a</b>) original image; (<b>b</b>) true label.</p>
Full article ">Figure 8
<p>Comparison of the F1_score of the China_MCrack training set on four networks.</p>
Full article ">Figure 9
<p>Comparison of the F1_score of the DeepCrack training set on four networks.</p>
Full article ">Figure 10
<p>Comparison of the F1_score of the CFD training set on four networks.</p>
Full article ">Figure 11
<p>Comparison of prediction results of four networks in China_MCrack. The crack images in different cases: (<b>a</b>) contains branches, (<b>b</b>,<b>c</b>) contain tiny cracks, (<b>d</b>) includes the entire road background, (<b>e</b>) has a thin boundary, and (<b>f</b>) has unclear edges.</p>
Full article ">Figure 11 Cont.
<p>Comparison of prediction results of four networks in China_MCrack. The crack images in different cases: (<b>a</b>) contains branches, (<b>b</b>,<b>c</b>) contain tiny cracks, (<b>d</b>) includes the entire road background, (<b>e</b>) has a thin boundary, and (<b>f</b>) has unclear edges.</p>
Full article ">Figure 12
<p>Comparison of prediction results of four networks in DeepCrack. The crack images in different cases: (<b>a</b>) contain leaves, (<b>b</b>) contain tiny cracks, (<b>c</b>) coarse cracks, (<b>d</b>) have blurred edges, (<b>e</b>) contain other edge interference, and (<b>f</b>–<b>h</b>) contain a lot of texture information.</p>
Full article ">Figure 12 Cont.
<p>Comparison of prediction results of four networks in DeepCrack. The crack images in different cases: (<b>a</b>) contain leaves, (<b>b</b>) contain tiny cracks, (<b>c</b>) coarse cracks, (<b>d</b>) have blurred edges, (<b>e</b>) contain other edge interference, and (<b>f</b>–<b>h</b>) contain a lot of texture information.</p>
Full article ">Figure 13
<p>Comparison of prediction results of four networks in CFD. The crack images in different cases: (<b>a</b>) contains cross cracks, (<b>b</b>) contains tiny cracks, (<b>c</b>) contains a lot of noise, (<b>d</b>) has blurred edges, (<b>e</b>) contains complex texture information, and (<b>f</b>) has low contrast.</p>
Full article ">Figure 13 Cont.
<p>Comparison of prediction results of four networks in CFD. The crack images in different cases: (<b>a</b>) contains cross cracks, (<b>b</b>) contains tiny cracks, (<b>c</b>) contains a lot of noise, (<b>d</b>) has blurred edges, (<b>e</b>) contains complex texture information, and (<b>f</b>) has low contrast.</p>
Full article ">Figure 14
<p>Comparison of prediction results on the BochumCrackDataset for models trained by four networks on China_MCrack. The crack images in different cases: (<b>a</b>) contain small cracks, (<b>b</b>,<b>c</b>) have complex backgrounds, (<b>d</b>) contain a lot of noise, and (<b>e</b>,<b>f</b>) have different image background colors.</p>
Full article ">Figure 14 Cont.
<p>Comparison of prediction results on the BochumCrackDataset for models trained by four networks on China_MCrack. The crack images in different cases: (<b>a</b>) contain small cracks, (<b>b</b>,<b>c</b>) have complex backgrounds, (<b>d</b>) contain a lot of noise, and (<b>e</b>,<b>f</b>) have different image background colors.</p>
Full article ">Figure 15
<p>MFE-UNet model training results on different datasets in the detection results of the BochumCrackDataset. The crack images in different cases: (<b>a</b>,<b>b</b>) coarse cracks, (<b>c</b>,<b>d</b>) fine cracks.</p>
Full article ">
17 pages, 3450 KiB  
Article
Coal and Gangue Detection Networks with Compact and High-Performance Design
by Xiangyu Cao, Huajie Liu, Yang Liu, Junheng Li and Ke Xu
Sensors 2024, 24(22), 7318; https://doi.org/10.3390/s24227318 (registering DOI) - 16 Nov 2024
Viewed by 226
Abstract
The efficient separation of coal and gangue remains a critical challenge in modern coal mining, directly impacting energy efficiency, environmental protection, and sustainable development. Current machine vision-based sorting methods face significant challenges in dense scenes, where label rewriting problems severely affect model performance, [...] Read more.
The efficient separation of coal and gangue remains a critical challenge in modern coal mining, directly impacting energy efficiency, environmental protection, and sustainable development. Current machine vision-based sorting methods face significant challenges in dense scenes, where label rewriting problems severely affect model performance, particularly when coal and gangue are closely distributed in conveyor belt images. This paper introduces CGDet (Coal and Gangue Detection), a novel compact convolutional neural network that addresses these challenges through two key innovations. First, we proposed an Object Distribution Density Measurement (ODDM) method to quantitatively analyze the distribution density of coal and gangue, enabling optimal selection of input and feature map resolutions to mitigate label rewriting issues. Second, we developed a Relative Resolution Object Scale Measurement (RROSM) method to assess object scales, guiding the design of a streamlined feature fusion structure that eliminates redundant components while maintaining detection accuracy. Experimental results demonstrate the effectiveness of our approach; CGDet achieved superior performance with AP50 and AR50 scores of 96.7% and 99.2% respectively, while reducing model parameters by 46.76%, computational cost by 47.94%, and inference time by 31.50% compared to traditional models. These improvements make CGDet particularly suitable for real-time coal and gangue sorting in underground mining environments, where computational resources are limited but high accuracy is essential. Our work provides a new perspective on designing compact yet high-performance object detection networks for dense scene applications. Full article
(This article belongs to the Special Issue Deep Learning for Perception and Recognition: Method and Applications)
Show Figures

Figure 1

Figure 1
<p>Structure of the YOLOX-s model.</p>
Full article ">Figure 2
<p>Illustration of CGDet model meshing and label rewriting.</p>
Full article ">Figure 3
<p>Structure of the CGDet model.</p>
Full article ">Figure 4
<p>Images of coal and gangue in the dataset.</p>
Full article ">Figure 5
<p>Distribution density of objects in different input resolution images in different resolution feature maps.</p>
Full article ">Figure 6
<p>The Scale of objects in the training set.</p>
Full article ">Figure 7
<p>mAP<sub>50</sub>, mAR<sub>50</sub>, and GFLOPs were obtained for images with different input resolutions.</p>
Full article ">Figure 8
<p>Visualization of CGDet’s detection results on the test set. (<b>a</b>) Predicted Bounding Boxes for Gangue (Blue) and Coal (Yellow); (<b>b</b>) Redundant Predictions with the Same Class Label (Coal); (<b>c</b>) Redundant Predictions with Different Class Labels (Coal and Gangue).</p>
Full article ">
18 pages, 2208 KiB  
Article
Ppn2 Polyphosphatase Improves the Ability of S. cerevisiae to Grow in Mild Alkaline Medium
by Irina A. Eliseeva, Lubov Ryazanova, Larisa Ledova, Anton Zvonarev, Airat Valiakhmetov, Maria Suntsova, Aleksander Modestov, Anton Buzdin, Dmitry N. Lyabin, Ivan V. Kulakovskiy and Tatiana Kulakovskaya
J. Fungi 2024, 10(11), 797; https://doi.org/10.3390/jof10110797 (registering DOI) - 16 Nov 2024
Viewed by 324
Abstract
Inorganic polyphosphates and respective metabolic pathways and enzymes are important factors for yeast active growth in unfavorable conditions. However, particular proteins of polyphosphate metabolism remain poorly explored in this context. Here we report biochemical and transcriptomic characterization of the CRN/PPN2 yeast strain (derived [...] Read more.
Inorganic polyphosphates and respective metabolic pathways and enzymes are important factors for yeast active growth in unfavorable conditions. However, particular proteins of polyphosphate metabolism remain poorly explored in this context. Here we report biochemical and transcriptomic characterization of the CRN/PPN2 yeast strain (derived from Ppn1-lacking CRN strain) overexpressing poorly studied Ppn2 polyphosphatase. We showed that Ppn2 overexpression significantly reduced lag phase in the alkaline medium presumably due to the ability of Ppn2 to efficiently hydrolyze inorganic polyphosphates and thus neutralize hydroxide ions in the cell. With RNA-Seq, we compared the molecular phenotypes of CRN/PPN2 and its parent CRN strain grown in YPD or alkaline medium and detected transcriptomic changes induced by Ppn2 overexpression and reflecting the adaptation to alkaline conditions. The core set of upregulated genes included several genes with a previously unknown function. Respective knockout strains (∆ecm8, ∆yol160w, ∆cpp3, ∆ycr099c) exhibited defects of growth or cell morphology in the alkaline medium, proving the functional involvement of the respective proteins in sustaining growth in alkaline conditions. Full article
(This article belongs to the Special Issue Stress Research in Filamentous Fungi and Yeasts)
Show Figures

Figure 1

Figure 1
<p>Ppn2 expression affects yeast adaptation to the alkaline medium. (<b>a</b>) The effect of alkali concentration on yeast culture density, cultivation for 24 h in immuno-plate in YPD supplemented with varying concentrations of KOH. The relative culture density in 96-well plates was measured at 594 nm. <span class="html-italic">Y</span>-axis shows the values normalized to those at 0 mM KOH. Whiskers denote s.d. * <span class="html-italic">p</span> &lt; 0.05, two-tailed <span class="html-italic">t</span>-test, CRN/PPN2 vs. CRN. (<b>b</b>) The growth curves of CRN and CRN/PPN2 strains in the control YPD medium and the YPD medium supplemented with 20 mM KOH. The culture density was measured at 594 nm in a 0.3 cm cuvette. The arrows indicate the growth curve timepoints, at which the biomass was harvested for polyP assay and transcriptome analysis. The ranges of optical densities of the respective cell cultures are labeled directly at the plot. (<b>c</b>) Pi, acid-soluble polyP, and acid-insoluble polyP cellular content at the late logarithmic growth stage. The cells were cultivated in 200 mL of control YPD and of YPD supplemented with 20 mM KOH. In control YPD, the cells of both strains were cultivated for 17 h, in YPD supplemented with 20 mM KOH the cells of CRN strain and the cells of CRN/PPN2 strain were cultivated for 42 h and 27 h, respectively. Whiskers: s.d. * <span class="html-italic">p</span> &lt; 0.05 two-tailed <span class="html-italic">t</span>-test. (<b>d</b>) Distribution of the absolute cell area and the relative vacuole area (normalized to the cell area) of CRN and CRN/PPN2 cells. In control YPD, the cells of both strains were cultivated for 17 h; in YPD supplemented with 20 mM KOH, the cells of CRN and CRN/PPN2 strains were cultivated for 42 h and 27 h, respectively. * <span class="html-italic">p</span> &lt; 0.01, unpaired two-samples Wilcoxon test. (<b>e</b>) The phase contrast microphotographs of CRN and CRN/PPN2 cells. Red circles pinpoint the cells of CRN/PPN2 strain having a round shape and enlarged vacuoles in the control YPD medium.</p>
Full article ">Figure 2
<p>Comparative transcriptomic characterization of CRN/PPN2 strain. (<b>a</b>) Principal component analysis (PCA) of normalized and batch-corrected RNA-Seq data. The percentage of variation explained by a particular principal component (PC) is indicated in the axis label. Point shape and coloring are consistent with the strain and cultivation condition. (<b>b</b>) Volcano plot of transcriptomic changes in CRN/PPN2 versus CRN, both cultivated in normal conditions (YDP); genes with adjusted <span class="html-italic">p</span>-value (FDR) &lt; 0.05 are colored, genes with FDR ≥ 0.05 are shown in grey. (<b>c</b>) Gene set enrichment analysis (GSEA) of changes in CRN/PPN2 versus CRN, cultivated in normal conditions (YDP). Genes were sorted by signed adjusted <span class="html-italic">p</span>-value. The selected significantly enriched gene ontology terms are shown; NES—Normalized Enrichment Score.</p>
Full article ">Figure 3
<p>Yeast transcriptome changes in adaptation to alkaline conditions. (<b>a</b>) Volcano plots of transcriptomic differences between cultivation conditions (YPD supplemented with 20 mM KOH versus normal conditions, YPD) in CRN (upper panel) and CRN/PPN2 (the lower panel) cells. Genes with adjusted <span class="html-italic">p</span>-value (FDR) &lt; 0.05 are colored, genes with FDR ≥ 0.05 are shown in grey. (<b>b</b>) Number of shared and unique significantly up- and down-regulated genes in KOH versus normal conditions in CRN (left) and CRN/PPN2 (right). The thresholds are shown. (<b>c</b>) Scatter plot shows the correlation of changes in gene expression between different cultivation conditions (YPD supplemented with 20 mM KOH versus normal conditions, YDP) in CRN (<span class="html-italic">x</span>-axis) and CRN/PPN2 (<span class="html-italic">y</span>-axis). Pearson’s CC and <span class="html-italic">p</span>-value are shown. The genes selected for the consequent analysis of mutant strains are labeled in red. (<b>d</b>) Gene set enrichment analysis (GSEA) of gene expression changes between cultivation conditions (YPD supplemented with 20 mM KOH versus normal conditions, YDP). Genes were sorted by signed adjusted <span class="html-italic">p</span>-value. The selected significantly enriched KEGG pathways are shown; NES—Normalized Enrichment Score.</p>
Full article ">Figure 4
<p>Expression changes of selected gene groups: genes directly involved in maintaining the proton gradient on the plasma membrane, phosphate ion transport (GO:0006817), polyphosphate metabolic process (GO:0006797), and encoding CYSTM proteins. (<b>Left panel</b>) changes in expression in 20 mM KOH versus YDP. (<b>Right panel</b>) changes in CRN/PPN2 versus CRN. * FDR &lt; 0.05.</p>
Full article ">Figure 5
<p>Cell morphology changes of yeast knockout strains grown in the alkaline medium. (<b>a</b>) Upregulated expression of selected poorly annotated genes in CRN and CRN/PPN2 cells grown in the alkaline medium (YPD supplemented with 20 mM KOH). * FDR &lt; 0.05. (<b>b</b>) Phase contrast microphotographs of various strains of <span class="html-italic">S. cerevisiae</span> cultivated in YPD supplemented with 40 mM KOH. The orange circles pinpoint important morphological changes. The orange arrows indicate cell lysis.</p>
Full article ">Figure 6
<p>Model of Ppn2 involvement in adaptation of CRN/PPN2 cells to mild alkaline medium. Vacuole alkalinization increases Ppn2 efficacy in producing short-chain from long-chain polyPs yielding excess Pi as counter-ion for both CRN and CRN/PPN2. The same process in the cytoplasm is specific for CRN/PPN2. The details are given in the text.</p>
Full article ">
19 pages, 1822 KiB  
Review
Uses of Molecular Docking Simulations in Elucidating Synergistic, Additive, and/or Multi-Target (SAM) Effects of Herbal Medicines
by Sean P. Rigby
Molecules 2024, 29(22), 5406; https://doi.org/10.3390/molecules29225406 (registering DOI) - 16 Nov 2024
Viewed by 360
Abstract
The philosophy of herbal medicines is that they contain multiple active components that target many aspects of a given disease. This is in line with the recent multiple-target strategy adopted due to shortcomings with the previous “magic bullet”, single-target strategy. The complexity of [...] Read more.
The philosophy of herbal medicines is that they contain multiple active components that target many aspects of a given disease. This is in line with the recent multiple-target strategy adopted due to shortcomings with the previous “magic bullet”, single-target strategy. The complexity of biological systems means it is often difficult to elucidate the mechanisms of synergistic, additive, and/or multi-target (SAM) effects. However, the use of methodologies employing molecular docking offers some insight into these. The aim of this work was to review the uses of molecular-docking simulations in the detection and/or elucidation of SAM effects with herbal medicines. Molecular docking has revealed the potential for SAM effects with many different, individual herbal medicines. Docking can also improve the fundamental understanding of SAM effects as part of systems biology approaches, such as providing quantitative weightings for the connections within static networks or supplying estimates of kinetic parameters for dynamic metabolic networks. Molecular docking can also be combined with pharmacophore modeling in a hybrid method that greatly improves the efficiency of screening. Overall, molecular docking has been shown to be a highly useful tool to provide evidence for the efficacy of herbal medicines, previously only supported by traditional usage. Full article
(This article belongs to the Special Issue Recent Advances in Computer-Aided Drug Design and Drug Discovery)
Show Figures

Figure 1

Figure 1
<p>Isoboles for zero interaction (additive), synergism, and antagonism. Reprinted with permission from Ref. [<a href="#B14-molecules-29-05406" class="html-bibr">14</a>]. Elsevier, 2009.</p>
Full article ">Figure 2
<p>Pathway network of platelet aggregation. Blue diamonds and red ellipses represent proteins and small molecules, respectively. Reprinted with permission from Ref. [<a href="#B60-molecules-29-05406" class="html-bibr">60</a>]. Wiley, 2013.</p>
Full article ">Figure 3
<p>Metabolic network of AA in human PMNs, ECs, and PLTs. Reprinted with permission from Ref. [<a href="#B66-molecules-29-05406" class="html-bibr">66</a>]. American Chemical Society, 2015.</p>
Full article ">Figure 4
<p>Strategy of multi-target inhibitor discovery. Reprinted with permission from Ref. [<a href="#B70-molecules-29-05406" class="html-bibr">70</a>]. ACS, 2008.</p>
Full article ">
11 pages, 3326 KiB  
Article
One-Step Multiplex RT-PCR Method for Detection of Melon Viruses
by Sheng Han, Tingting Zhou, Fengqin Zhang, Jing Feng, Chenggui Han and Yushanjiang Maimaiti
Microorganisms 2024, 12(11), 2337; https://doi.org/10.3390/microorganisms12112337 (registering DOI) - 15 Nov 2024
Viewed by 317
Abstract
This study presents a one-step multiplex reverse transcription polymerase chain reaction (RT-PCR) method for the simultaneous detection of multiple viruses affecting melon crops. Viruses such as Watermelon mosaic virus (WMV), Cucumber mosaic virus (CMV), Zucchini yellow mosaic virus (ZYMV), Squash mosaic virus (SqMV), [...] Read more.
This study presents a one-step multiplex reverse transcription polymerase chain reaction (RT-PCR) method for the simultaneous detection of multiple viruses affecting melon crops. Viruses such as Watermelon mosaic virus (WMV), Cucumber mosaic virus (CMV), Zucchini yellow mosaic virus (ZYMV), Squash mosaic virus (SqMV), Tobacco mosaic virus (TMV), Papaya ring spot virus (PRSV), and Melon yellow spot virus (MYSV) pose a great threat to melons. The mixed infection of these viruses is the most common observation in the melon-growing fields. In this study, we surveyed northern Xingjiang (Altay, Changji, Wujiaqu, Urumqi, Turpan, and Hami) and southern Xingjiang (Aksu, Bayingolin, Kashgar, and Hotan) locations in Xinjiang province and developed a one-step multiplex RT-PCR to detect these melon viruses. The detection limits of this multiplex PCR were 103 copies/μL for ZYMV and MYSV and 102 copies/μL for WMV, SqMV, PRSV, CMV, and TMV. The detection results in the field showed 242 samples were infected by one or more viruses. The multiplex RT-PCR protocol demonstrated rapid, simultaneous, and relatively effective detection of viruses such as WMV, CMV, ZYMV, SqMV, TMV, PRSV, and MYSV. The technique is designed to identify these melon viruses in a single reaction, enhancing diagnostic efficiency and reducing costs, thus serving as a reference for muskmelon anti-virus breeding in Xinjiang. Full article
(This article belongs to the Section Virology)
Show Figures

Figure 1

Figure 1
<p>The map shows the locations of sampling sites across various prefectures in Xinjiang, marked by red pins. Prefectures include Aksu, Altay, Kashi, Hotan, Hami, Turpan, and Bayingolin Mongolian Autonomous Prefecture, with notable cities such as Urumqi and Changji Hui Autonomous Prefecture also highlighted. The boundaries of Xinjiang, China’s international borders, and various administrative regions are outlined, with a smaller inset map showing the location of Xinjiang within China.</p>
Full article ">Figure 2
<p>The images show different degrees of chlorosis, mosaic patterns, and leaf deformation in melon plants across treatments. Panels (<b>A1</b>–<b>J3</b>) depict variations in disease symptoms such as yellowing, curling, and blistering. Each row represents a different set of treatments, with individual images (<b>A1</b>–<b>J3</b>) highlighting specific responses of the leaves to potential stressors. These visible symptoms suggest the presence of viral or environmental stress, with severity and patterns differing across the treatments.</p>
Full article ">Figure 3
<p>(<b>A</b>). The specificity analysis results of the multiplex RT-PCR detection method. The detection samples corresponding to lanes 1 to 7 only contain WMV, CMV, ZYMV, SqMV, TMV, PRSV, and MYSV, respectively. (<b>B</b>). The sensitivity tests of the multiplex RT-PCR detection method. The drop-out experiments were carried out to test the specificity of this multiplex RT-PCR, in which one pair was removed at a time to see whether the rest of the primers had cross-reacted.; lane 1: healthy plant (negative control); lane 2: detection of MYSV; lane 3: detection of PRSV; lane 4: detection of TMV; lane 5: detection of SqMV; lane 6: detection of ZYMV; lane 7: detection of CMV. (<b>C1</b>). Detection results of using different Mg<sup>2+</sup> concentrations in multiplex RT-PCR amplification system. lane 1: at 1.0 mol/L; lane 2: at 1.5 mmol/L; lane 3: at 2.0 mmol/L; lane 4: at 2.5 mmol/L; lane 5: at 3.0 mmol/L; lane 6: at 3.5 mmol/L; lane 7: at 4.0 mmol/L. (<b>C2</b>). Detection results of using different template cDNA volumes in multiplex RT-PCR amplification system. lane 1: at 0.5 μL; lane 2: at 0.75 μL; lane 3: at 1 μL; lane 4: at 1.25 μL; lane 5: at 1.5 μL; lane 6: at 1.75 μL; lane 7: at 2 μL. (<b>C3</b>). Detection results of using different primer amounts in a multiplex RT-PCR amplification system; lane 1: at 2 × 10<sup>−5</sup> μmol, and molar ratios of primers for WMV, CMV, ZYMV, SqMV, TMV, PRSV, and MYSV is 1:1:1:1:1:1:1; lane 2: at 2 × 10<sup>−5</sup> μmol, and molar ratios of primers for WMV, CMV, ZYMV, SqMV, TMV, PRSV, and MYSV is 2:2:2:1:1:1:1; lane 3: at 2 × 10<sup>−5</sup> μmol, and molar ratios of primers for WMV, CMV, ZYMV, SqMV, TMV, PRSV, and MYSV is 10:9:8:8:5:5:3:3; lane 4: at 5 × 10<sup>−5</sup> μmol, and molar ratios of primers for WMV, CMV, ZYMV, SqMV, TMV, PRSV, and MYSV is 1:1:1:1:1:1:1; lane 5: at 5 × 10<sup>−5</sup> μmol, and molar ratios of primers for WMV, CMV, ZYMV, SqMV, TMV, PRSV, and MYSV is 2:2:2:1:1:1:1; lane 6: at 5 × 10<sup>−5</sup> μmol, and molar ratios of primers for WMV, CMV, ZYMV, SqMV, TMV, PRSV, and MYSV is 10:9:8:8:5:5:3:3; lane 7: at 7 × 10<sup>−5</sup> μmol, and molar ratios of primers for WMV, CMV, ZYMV, SqMV, TMV, PRSV, and MYSV is 1:1:1:1:1:1:1. (<b>C4</b>). Detection results of using different dNTP concentrations in multiplex RT-PCR amplification system; lane 1: at 0.2 mmol/L; lane 2: at 0.4 mmol/L; lane 3: at 0.6 mmol/L; lane 4: at 0.8 mmol/L; lane 5: at 1.0 mmol/L; lane 6: at 1.2 mmol/L; lane 7: at 1.4 mmol/L; (<b>C5</b>). Detection results of different amounts of Taq DNA polymerase in multiplex RT-PCR amplification system; lane 1: at 0.25 U; lane 2: at 0.5 U; lane 3: at 0.75 U; lane 4: at 1.0 U; lane 5: at 1.25 U; lane 6: at 1.5 U; lane 7: at 1.75 U. (<b>C6</b>). Detection results of using different annealing temperatures in multiplex RT-PCR method; lane 1: at 50 °C; lane 2: at 51 °C; lane 3: at 52 °C; lane 4: at 53 °C; lane 5: at 54 °C; lane 6: at 55 °C; lane 7: at 56 °C. (<b>D</b>). The detection limits of the multiplex RT-PCR assays. The detection limits of this multiplex PCR were conducted by a series of sensitivity tests. The positive clone vector was adjusted to the same initial concentration and diluted serially ten-fold (10<sup>5</sup> to 10<sup>10</sup> copies/μL) to serve as a template in the optimized multiplex PCR. (<b>D1</b>). The detection limits of WMV; 1–6 stand for 10<sup>5</sup> to 10<sup>0</sup> copies/μL. (<b>D2</b>). The detection limits of CMV;1–6 stand for 10<sup>5</sup> to 10<sup>0</sup> copies/μL. (<b>D3</b>). The detection limits of ZYMV; 1–6 stand for 10<sup>5</sup> to 10<sup>0</sup> copies/μL (<b>D4</b>). The detection limits of SqMV; 1–6 stand for 10<sup>5</sup> to 10<sup>0</sup> copies/μL. (<b>D5</b>). The detection limits of TMV; 1–6 stand for 10<sup>5</sup> to 10<sup>0</sup> copies/μL. (<b>D6</b>). The detection limits of PRSV; 1–6 stand for 10<sup>5</sup> to 10<sup>0</sup> copies/μL. (<b>D7</b>). The detection limits of MYSV; 1–6 stand for 10<sup>5</sup> to 10<sup>0</sup> copies/μL. ”–“represents deionized water as control. M: DNA marker (100 bp–2000 bp).</p>
Full article ">Figure 4
<p>(<b>A</b>). The heatmap displays the distribution and frequency of various viral diseases affecting melon crops across different regions in northern and southern Xinjiang. The regions include Altay, Changji, Wujiaqu, Urumqi, Turpan, Hami, Aksu, Bayingolin, Kashgar, and Hotan. Viral diseases represented are <span class="html-italic">Watermelon Mosaic Virus</span> (WMV), <span class="html-italic">Cucumber Mosaic Virus</span> (CMV), <span class="html-italic">Zucchini Yellow Mosaic Virus</span> (ZYMV), <span class="html-italic">Squash Mosaic Virus</span> (SqMV), <span class="html-italic">Tobacco Mosaic Virus</span> (TMV), <span class="html-italic">Papaya Ringspot Virus</span> (PRSV), and <span class="html-italic">Melon Yellow Spot Virus</span> (MYSV). The color intensity corresponds to the number of cases, with red indicating higher incidence. The total number of cases (N = 242) per virus and per region is shown, with regions in southern Xinjiang showing a generally higher disease incidence compared to northern Xinjiang. (<b>B</b>). This figure shows the results of differential analysis of detection rates among different viruses in the Xinjiang region. The data of each virus detection rate on the horizontal axis is the average of the virus detection rates in 10 locations in Xinjiang. This figure shows the analysis results of the differences in virus detection rates between different regions. The horizontal axis represents different virus types, and the vertical axis represents virus detection rates. (<b>C</b>). Detection rate of <span class="html-italic">Watermelon Mosaic Virus</span> (WMV), <span class="html-italic">Cucumber Mosaic Virus</span> (CMV), <span class="html-italic">Zucchini Yellow Mosaic Virus</span> (ZYMV), <span class="html-italic">Squash Mosaic Virus</span> (SqMV), <span class="html-italic">Tobacco Mosaic Virus</span> (TMV), <span class="html-italic">Papaya Ringspot Virus</span> (PRSV), and <span class="html-italic">Melon Yellow Spot Virus</span> (MYSV) at different locations of Xinjiang. The reaction experimental results of lowercase letters reach the 0.05 significance level. Different letters represent significant differences between groups, and the same letters or shared letters represent insignificant differences between groups.</p>
Full article ">Figure 5
<p>Results of multiplex RT-PCR detection method for virus disease samples from different regions; M: Marker; 1–24: Samples of melon plants infected by virus diseases in different regions of Xinjiang.</p>
Full article ">
19 pages, 6931 KiB  
Article
A Hybrid Deep Learning Framework for OFDM with Index Modulation Under Uncertain Channel Conditions
by Md Abdul Aziz, Md Habibur Rahman, Rana Tabassum, Mohammad Abrar Shakil Sejan, Myung-Sun Baek and Hyoung-Kyu Song
Mathematics 2024, 12(22), 3583; https://doi.org/10.3390/math12223583 (registering DOI) - 15 Nov 2024
Viewed by 297
Abstract
Index modulation (IM) is considered a promising approach for fifth-generation wireless systems due to its spectral efficiency and reduced complexity compared to conventional modulation techniques. However, IM faces difficulties in environments with unpredictable channel conditions, particularly in accurately detecting index values and dynamically [...] Read more.
Index modulation (IM) is considered a promising approach for fifth-generation wireless systems due to its spectral efficiency and reduced complexity compared to conventional modulation techniques. However, IM faces difficulties in environments with unpredictable channel conditions, particularly in accurately detecting index values and dynamically adjusting index assignments. Deep learning (DL) offers a potential solution by improving detection performance and resilience through the learning of intricate patterns in varying channel conditions. In this paper, we introduce a robust detection method based on a hybrid DL (HDL) model designed specifically for orthogonal frequency-division multiplexing with IM (OFDM-IM) in challenging channel environments. Our proposed HDL detector leverages a one-dimensional convolutional neural network (1D-CNN) for feature extraction, followed by a bidirectional long short-term memory (Bi-LSTM) network to capture temporal dependencies. Before feeding data into the network, the channel matrix and received signals are preprocessed using domain-specific knowledge. We evaluate the bit error rate (BER) performance of the proposed model using different optimizers and equalizers, then compare it with other models. Moreover, we evaluate the throughput and spectral efficiency across varying SNR levels. Simulation results demonstrate that the proposed hybrid detector surpasses traditional and other DL-based detectors in terms of performance, underscoring its effectiveness for OFDM-IM under uncertain channel conditions. Full article
Show Figures

Figure 1

Figure 1
<p>Generalized data transmission process for an OFDM-IM system.</p>
Full article ">Figure 2
<p>Structure of the proposed HDL detector for OFDM-IM systems.</p>
Full article ">Figure 3
<p>The internal configuration of an LSTM cell.</p>
Full article ">Figure 4
<p>Training loss of the proposed HDL model for different equalizers with data setup <math display="inline"><semantics> <mrow> <mo>(</mo> <mi>N</mi> <mo>,</mo> <mi>A</mi> <mo>,</mo> <mi>M</mi> <mo>)</mo> <mo>=</mo> <mo>(</mo> <mn>4</mn> <mo>,</mo> <mn>1</mn> <mo>,</mo> <mn>4</mn> <mo>)</mo> </mrow> </semantics></math>: (<b>a</b>) training loss for the ZF equalizer, (<b>b</b>) training loss for the MMSE equalizer, and (<b>c</b>) training loss for the DFE equalizer.</p>
Full article ">Figure 5
<p>Training loss of the proposed HDL model for different modulation orders and data combinations with the ZF equalizer: (<b>a</b>) training loss for the <math display="inline"><semantics> <mrow> <mo>(</mo> <mi>N</mi> <mo>,</mo> <mi>A</mi> <mo>,</mo> <mi>M</mi> <mo>)</mo> <mo>=</mo> <mo>(</mo> <mn>4</mn> <mo>,</mo> <mn>1</mn> <mo>,</mo> <mn>4</mn> <mo>)</mo> </mrow> </semantics></math> setup, (<b>b</b>) training loss for the <math display="inline"><semantics> <mrow> <mo>(</mo> <mi>N</mi> <mo>,</mo> <mi>A</mi> <mo>,</mo> <mi>M</mi> <mo>)</mo> <mo>=</mo> <mo>(</mo> <mn>8</mn> <mo>,</mo> <mn>2</mn> <mo>,</mo> <mn>8</mn> <mo>)</mo> </mrow> </semantics></math> setup, and (<b>c</b>) training loss for the <math display="inline"><semantics> <mrow> <mo>(</mo> <mi>N</mi> <mo>,</mo> <mi>A</mi> <mo>,</mo> <mi>M</mi> <mo>)</mo> <mo>=</mo> <mo>(</mo> <mn>8</mn> <mo>,</mo> <mn>4</mn> <mo>,</mo> <mn>16</mn> <mo>)</mo> </mrow> </semantics></math> setup.</p>
Full article ">Figure 6
<p>The confusion matrix of the proposed HDL-based model.</p>
Full article ">Figure 7
<p>Performance of the HDL-based detector with (<b>a</b>) different learning rates and (<b>b</b>) different batch sizes in for the <math display="inline"><semantics> <mrow> <mo>(</mo> <mn>4</mn> <mo>,</mo> <mn>1</mn> <mo>,</mo> <mn>4</mn> <mo>)</mo> </mrow> </semantics></math> data combination.</p>
Full article ">Figure 8
<p>Performance of the HDL-based detector at various training SNRs for the <math display="inline"><semantics> <mrow> <mo>(</mo> <mn>4</mn> <mo>,</mo> <mn>1</mn> <mo>,</mo> <mn>4</mn> <mo>)</mo> </mrow> </semantics></math> data configuration.</p>
Full article ">Figure 9
<p>Performance of the proposed HDL-based detector with various equalizers for the <math display="inline"><semantics> <mrow> <mo>(</mo> <mn>4</mn> <mo>,</mo> <mn>1</mn> <mo>,</mo> <mn>4</mn> <mo>)</mo> </mrow> </semantics></math> data configuration.</p>
Full article ">Figure 10
<p>BER performance of the proposed HDL-based detector utilizing different optimizers for the <math display="inline"><semantics> <mrow> <mo>(</mo> <mn>4</mn> <mo>,</mo> <mn>1</mn> <mo>,</mo> <mn>4</mn> <mo>)</mo> </mrow> </semantics></math> data configuration.</p>
Full article ">Figure 11
<p>BER performance of the proposed HDL-based detector for various modulation orders and data setup.</p>
Full article ">Figure 12
<p>BER performance comparison of the proposed HDL-based detector with other detectors under imperfect CSI conditions for the <math display="inline"><semantics> <mrow> <mo>(</mo> <mn>4</mn> <mo>,</mo> <mn>1</mn> <mo>,</mo> <mn>4</mn> <mo>)</mo> </mrow> </semantics></math> data combinations.</p>
Full article ">Figure 13
<p>Throughput and SE of the proposed HDL-based OFDM-IM system: (<b>a</b>) throughput performance and (<b>b</b>) SE performance.</p>
Full article ">
21 pages, 1665 KiB  
Article
Exosomal mRNA Signatures as Predictive Biomarkers for Risk and Age of Onset in Alzheimer’s Disease
by Daniel A. Bolívar, María I. Mosquera-Heredia, Oscar M. Vidal, Ernesto Barceló, Ricardo Allegri, Luis C. Morales, Carlos Silvera-Redondo, Mauricio Arcos-Burgos, Pilar Garavito-Galofre and Jorge I. Vélez
Int. J. Mol. Sci. 2024, 25(22), 12293; https://doi.org/10.3390/ijms252212293 (registering DOI) - 15 Nov 2024
Viewed by 425
Abstract
Alzheimer’s disease (AD) is a neurodegenerative disorder characterized by progressive cognitive decline and memory loss. While the precise causes of AD remain unclear, emerging evidence suggests that messenger RNA (mRNA) dysregulation contributes to AD pathology and risk. This study examined exosomal mRNA expression [...] Read more.
Alzheimer’s disease (AD) is a neurodegenerative disorder characterized by progressive cognitive decline and memory loss. While the precise causes of AD remain unclear, emerging evidence suggests that messenger RNA (mRNA) dysregulation contributes to AD pathology and risk. This study examined exosomal mRNA expression profiles of 15 individuals diagnosed with AD and 15 healthy controls from Barranquilla, Colombia. Utilizing advanced bioinformatics and machine learning (ML) techniques, we identified differentially expressed mRNAs and assessed their predictive power for AD diagnosis and AD age of onset (ADAOO). Our results showed that ENST00000331581 (CADM1) and ENST00000382258 (TNFRSF19) were significantly upregulated in AD patients. Key predictors for AD diagnosis included ENST00000311550 (GABRB3), ENST00000278765 (GGTLC1), ENST00000331581 (CADM1), ENST00000372572 (FOXJ3), and ENST00000636358 (ACY1), achieving > 90% accuracy in both training and testing datasets. For ADAOO, ENST00000340552 (LIMK2) expression correlated with a delay of ~12.6 years, while ENST00000304677 (RNASE6), ENST00000640218 (HNRNPU), ENST00000602017 (PPP5D1), ENST00000224950 (STN1), and ENST00000322088 (PPP2R1A) emerged as the most important predictors. ENST00000304677 (RNASE6) and ENST00000602017 (PPP5D1) showed promising predictive accuracy in unseen data. These findings suggest that mRNA expression profiles may serve as effective biomarkers for AD diagnosis and ADAOO, providing a cost-efficient and minimally invasive tool for early detection and monitoring. Further research is needed to validate these results in larger, diverse cohorts and explore the biological roles of the identified mRNAs in AD pathogenesis. Full article
(This article belongs to the Special Issue Molecular Advances in Alzheimer’s Disease 3.0)
Show Figures

Figure 1

Figure 1
<p>Volcano plots for mRNAs (<b>a</b>) conferring AD susceptibility, (<b>b</b>) differentially expressed mRNAs between the comparison groups, and (<b>c</b>) associated with ADAOO. Red lines show statistically significant mRNAs at 5%.</p>
Full article ">Figure 2
<p>Manhattan plots showing mRNA signatures (<b>a</b>) conferring susceptibility to AD (<span class="html-italic">p</span> &lt; 0.01 threshold, red line), (<b>b</b>) differentially expressed between study groups (<span class="html-italic">p</span> &lt; 2.5 × 10<sup>−6</sup> threshold, red line), and (<b>c</b>) associated with ADAOO (<span class="html-italic">p</span> &lt; 2.5 × 10<sup>−6</sup> threshold, red line) in a sample of 15 individuals with AD from Barranquilla, Colombia.</p>
Full article ">Figure 3
<p>(<b>a</b>) Accuracy and 95% confidence intervals for predicting AD diagnosis using different ML algorithms based on the top 30 mRNAs identified with OneR. (<b>b</b>) ROC curves for the xgbTree algorithm in the training (blue) and testing (green) datasets. (<b>c</b>) Variable importance analysis for the xgbTree algorithm. ROC: receiver operating characteristic; AUC: area under the ROC curve.</p>
Full article ">Figure 4
<p>Variable importance for the (<b>a</b>) rf, (<b>b</b>) xgbLinear, and (<b>c</b>) xgbTree ML algorithms for predicting ADAOO. Here, higher values are better.</p>
Full article ">
28 pages, 3675 KiB  
Review
Machine Learning in Active Power Filters: Advantages, Limitations, and Future Directions
by Khaled Chahine
AI 2024, 5(4), 2433-2460; https://doi.org/10.3390/ai5040119 (registering DOI) - 15 Nov 2024
Viewed by 497
Abstract
Machine learning (ML) techniques have permeated various domains, offering intelligent solutions to complex problems. ML has been increasingly explored for applications in active power filters (APFs) due to its potential to enhance harmonic compensation, reference signal generation, filter control optimization, and fault detection [...] Read more.
Machine learning (ML) techniques have permeated various domains, offering intelligent solutions to complex problems. ML has been increasingly explored for applications in active power filters (APFs) due to its potential to enhance harmonic compensation, reference signal generation, filter control optimization, and fault detection and diagnosis. This paper reviews the most recent applications of ML in APFs, highlighting their abilities to adapt to nonlinear load conditions, improve fault detection and classification accuracy, and optimize system performance in real time. However, this paper also highlights several limitations of these methods, such as the high computational complexity, the need for extensive training data, and challenges with real-time deployment in distributed power systems. For example, the marginal improvements in total harmonic distortion (THD) achieved by ML-based methods often do not justify the increased computational overhead compared to traditional control methods. This review then suggests future research directions to overcome these limitations, including lightweight ML models for faster and more efficient control, federated learning for decentralized optimization, and digital twins for real-time system monitoring. While traditional methods remain effective, ML-based solutions have the potential to significantly enhance APF performance in future power systems. Full article
Show Figures

Figure 1

Figure 1
<p>The block diagram of a shunt APF [<a href="#B3-ai-05-00119" class="html-bibr">3</a>].</p>
Full article ">Figure 2
<p>Common active power filter faults.</p>
Full article ">Figure 3
<p>The steady increase in machine-learning publications related to active power filters from 2019 to 2024.</p>
Full article ">Figure 4
<p>Machine learning methods and applications in active power filters.</p>
Full article ">Figure 5
<p>Advantages and disadvantages of machine learning in active power filters.</p>
Full article ">Figure 6
<p>Future research on machine learning in active power filters and the expected outcomes.</p>
Full article ">Figure 7
<p>Advantages of lightweight machine learning in active power filters.</p>
Full article ">Figure 8
<p>Advantages of federated learning in active power filters.</p>
Full article ">Figure 9
<p>Advantages of digital twins in active power filters.</p>
Full article ">
26 pages, 1159 KiB  
Article
FEBE-Net: Feature Exploration Attention and Boundary Enhancement Refinement Transformer Network for Bladder Tumor Segmentation
by Chao Nie, Chao Xu and Zhengping Li
Mathematics 2024, 12(22), 3580; https://doi.org/10.3390/math12223580 (registering DOI) - 15 Nov 2024
Viewed by 277
Abstract
The automatic and accurate segmentation of bladder tumors is a key step in assisting urologists in diagnosis and analysis. At present, existing Transformer-based methods have limited ability to restore local detail features and insufficient boundary segmentation capabilities. We propose FEBE-Net, which aims to [...] Read more.
The automatic and accurate segmentation of bladder tumors is a key step in assisting urologists in diagnosis and analysis. At present, existing Transformer-based methods have limited ability to restore local detail features and insufficient boundary segmentation capabilities. We propose FEBE-Net, which aims to effectively capture global and remote semantic features, preserve more local detail information, and provide clearer and more precise boundaries. Specifically, first, we use PVT v2 backbone to learn multi-scale global feature representations to adapt to changes in bladder tumor size and shape. Secondly, we propose a new feature exploration attention module (FEA) to fully explore the potential local detail information in the shallow features extracted by the PVT v2 backbone, eliminate noise, and supplement the missing fine-grained details for subsequent decoding stages. At the same time, we propose a new boundary enhancement and refinement module (BER), which generates high-quality boundary clues through boundary detection operators to help the decoder more effectively preserve the boundary features of bladder tumors and refine and adjust the final predicted feature map. Then, we propose a new efficient self-attention calibration decoder module (ESCD), which, with the help of boundary clues provided by the BER module, gradually and effectively recovers global contextual information and local detail information from high-level features after calibration enhancement and low-level features after exploration attention. Extensive experiments on the cystoscopy dataset BtAMU and five colonoscopy datasets have shown that FEBE-Net outperforms 11 state-of-the-art (SOTA) networks in segmentation performance, with higher accuracy, stronger robust stability, and generalization ability. Full article
(This article belongs to the Special Issue Medical Imaging Analysis with Artificial Intelligence)
16 pages, 3431 KiB  
Article
Sample Inflation Interpolation for Consistency Regularization in Remote Sensing Change Detection
by Zuo Jiang, Haobo Chen and Yi Tang
Mathematics 2024, 12(22), 3577; https://doi.org/10.3390/math12223577 (registering DOI) - 15 Nov 2024
Viewed by 250
Abstract
Semi-supervised learning has gained significant attention in the field of remote sensing due to its ability to effectively leverage both a limited number of labeled samples and a large quantity of unlabeled data. An effective semi-supervised learning approach utilizes unlabeled samples to enforce [...] Read more.
Semi-supervised learning has gained significant attention in the field of remote sensing due to its ability to effectively leverage both a limited number of labeled samples and a large quantity of unlabeled data. An effective semi-supervised learning approach utilizes unlabeled samples to enforce prediction consistency under minor perturbations, thus reducing the model’s sensitivity to noise and suppressing false positives in change-detection tasks. This principle underlies consistency regularization-based methods. However, while these methods enhance noise robustness, they also risk overlooking subtle but meaningful changes, leading to information loss and missed detections. To address this issue, we introduce a simple yet efficient method called Sample Inflation Interpolation (SII). This method leverages labeled sample pairs to mitigate the information loss caused by consistency regularization. Specifically, we propose a novel data augmentation strategy that generates additional change samples by combining existing supervised change samples with calculated proportions of change areas. This approach increases both the quantity and diversity of change samples in the training set, effectively compensating for potential information loss and reducing missed detections. Furthermore, to prevent overfitting, small perturbations are applied to the generated sample pairs and their labels. Experiments conducted on two public change detection (CD) datasets validate the effectiveness of our proposed method. Remarkably, even with only 5% of labeled training data, our method achieves performance levels that closely approach those of fully supervised learning models. Full article
Show Figures

Figure 1

Figure 1
<p>The overall network framework.</p>
Full article ">Figure 2
<p>The overall framework of the proposed interpolation method applied to semi-supervised change detection.</p>
Full article ">Figure 3
<p>(<b>a</b>) image before the change, (<b>b</b>) image after the change, (<b>c</b>) RCR, (<b>d</b>) ECPS, (<b>e</b>) ours, (<b>f</b>) ground truth.</p>
Full article ">Figure 4
<p>(<b>a</b>) image before the change, (<b>b</b>) image after the change, (<b>c</b>) RCR, (<b>d</b>) ECPS, (<b>e</b>) ours, (<b>f</b>) ground truth.</p>
Full article ">
Back to TopTop