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19 pages, 5921 KiB  
Article
Geochemical Dynamics and Evolutionary Implications of Sediments at the Xingu–Amazon Rivers’ Confluence: Proxies for Mixing, Mobility and Weathering
by Lucio Cardoso Medeiros Filho, Nils Edvin Asp, Jean Michel Lafon, Thiago Pereira Souza, José Francisco Berredo and Gabriel Negreiros Salomão
Minerals 2024, 14(11), 1101; https://doi.org/10.3390/min14111101 - 29 Oct 2024
Viewed by 513
Abstract
This study investigates the geochemical characteristics and evolutionary implications of sediments at the confluence of the Xingu and Amazon Rivers. The main objective is to understand sediment mixing, mobility, and weathering processes through geochemical proxies. Samples were collected from various sections of the [...] Read more.
This study investigates the geochemical characteristics and evolutionary implications of sediments at the confluence of the Xingu and Amazon Rivers. The main objective is to understand sediment mixing, mobility, and weathering processes through geochemical proxies. Samples were collected from various sections of the lower Xingu River, focusing on its interaction with the Amazon River. Analytical techniques such as X-ray diffraction (XRD), X-ray fluorescence (XRF), and inductively coupled plasma mass spectrometry (ICP-MS) were employed to analyze major and trace elements. The results reveal significant spatial variations in mineralogical and textural patterns, with sediments forming distinct groupings based on their location. The data suggest that the lower Xingu River is strongly influenced by sediment inputs from the Amazon River, particularly affecting sediment composition and chemical weathering processes. This research highlights the critical interactions between river systems and their implications for the evolution of the Amazon basin, especially regarding sediment contributions from various geological sources. Even though the Xingu River drains cratonic regions at higher elevations, the geochemistry of the bottom sediments confirms that the bedload is derived from heterogeneous sources with primarily intermediate igneous compositions and has undergone substantial recycling during river transport. Full article
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Figure 1
<p>Location of the study area. The Xingu ria indicates the lower course of the basin and the region where it confluences with the Amazon River; the sampled points are divided into low, medium, and high sectors based on the local geology (<b>A</b>). The region the Xingu River basin occupies becomes the Amazon River before being emptied into the Atlantic Ocean (<b>B</b>).</p>
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<p>Categorization of recognized mineral assemblages and arrangement of granulometric samples in a triangular diagram based on the Sheppard classification (1959). One can undertake an interpolation of the granulometric classification based on the phi scale by using a larger sample size. An estimation of the granulometric classification based on the phi scale can be conducted in the research region by taking into account a larger sample size.</p>
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<p>The main major oxides (wt%) in relation to silica (SiO<sub>2</sub>) concentration are divided into sectors within the study area.</p>
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<p>Major oxide and trace element normalization to the Upper Continental Crust (UCC) and color-coded sectorization.</p>
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<p>PCA analysis for major elements (<b>A</b>) trace elements (<b>B</b>). The analysis included the implementation of mineralogical groups (MG) and the phi scale. The correlation matrix is found in the <a href="#app1-minerals-14-01101" class="html-app">Supplementary Material (Table S2)</a>.</p>
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<p>K<sub>2</sub>O and SiO<sub>2</sub> normalized to Al<sub>2</sub>O<sub>3</sub> (<b>A</b>), and CIA compared to SiO<sub>2</sub>/Al<sub>2</sub>O<sub>3</sub> indicate field separation (<b>B</b>). Fe<sub>2</sub>O<sub>3</sub> and Al<sub>2</sub>O<sub>3</sub> normalized to SiO<sub>2</sub> linearly separate the fields (<b>C</b>) as well as DF2 vs. DF1 diagrams, indicate source provenance (<b>D</b>). Roser and Korsch (1985) [<a href="#B40-minerals-14-01101" class="html-bibr">40</a>] proposed the use of discriminant functions (DF1 = 30.68 × TiO<sub>2</sub>/Al<sub>2</sub>O<sub>3</sub> − 12.54 × Fe<sub>2</sub>O<sub>3</sub>/Al<sub>2</sub>O<sub>3</sub> + 7.33 × MgO/Al<sub>2</sub>O<sub>3</sub> + 12.03 × Na<sub>2</sub>O/Al<sub>2</sub>O<sub>3</sub> + 35.40 × K<sub>2</sub>O/Al<sub>2</sub>O<sub>3</sub> − 6.38 e DF2 = 56.5 × TiO<sub>2</sub>/Al<sub>2</sub>O<sub>3</sub> − 10.88 × FeO<sub>3</sub> + 30.87 × MgO/Al<sub>2</sub>O<sub>3</sub> − 5.40 × Na<sub>2</sub>O/Al<sub>2</sub>O<sub>3</sub> + 11.11 × K<sub>2</sub>O/Al<sub>2</sub>O<sub>3</sub> − 3.89) to divide the fields related to the different provenances of sedimentary rocks (source rocks: quartzose, intermediate, felsic, and mafic sedimentary).</p>
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<p>A-CN-K ternary diagram (Fedo et al., 1995 [<a href="#B31-minerals-14-01101" class="html-bibr">31</a>]; Nesbit and Young 1982 [<a href="#B30-minerals-14-01101" class="html-bibr">30</a>]) showing the influence of weathering on sediment compositional history. The blue star represents the bottom sediments of the Amazon River downstream from Santarém (about 230 km upstream from the mouth of the Xingu River) obtained by Medeiros Filho et al., 2016 [<a href="#B20-minerals-14-01101" class="html-bibr">20</a>], and the yellow stars represent data from suspended material essentially from the Xingu River by Baturin, 2019 [<a href="#B16-minerals-14-01101" class="html-bibr">16</a>].</p>
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<p>Conservative ratios of trace elements associated with Th/Al ratio discriminated among sectors.</p>
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<p>The LREE/HREEUCC ratio and average particle size (phi scale) distribution have been demonstrated to distinguish chemical weathering from transport/hydraulic categorization. The black arrow indicates the transition between predominance of weathering and remobilization of sediments by hydraulic transport. (adapted from Su et al. in 2019 [<a href="#B47-minerals-14-01101" class="html-bibr">47</a>]).</p>
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<p>Schematic model of enrichment and depletion of elements in the Xingu River and the influence of the Amazon River on geochemical balance. The domains in blue represent the Xingu complex of the Archean age, and the yellow is the Alter do Chão formation of the Cenozoic age.</p>
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20 pages, 15410 KiB  
Article
Mercury Dynamics and Bioaccumulation Risk Assessment in Three Gold Mining-Impacted Amazon River Basins
by Vitor Sousa Domingues, Carlos Colmenero, Maria Vinograd, Marcelo Oliveira-da-Costa and Rodrigo Balbueno
Toxics 2024, 12(8), 599; https://doi.org/10.3390/toxics12080599 - 18 Aug 2024
Viewed by 1223
Abstract
Mercury contamination from gold mining in the Amazon poses significant environmental and health threats to the biome and its local populations. The recent expansion of non-industrial mining areas has severely impacted territories occupied by traditional communities. To address the lack of sampling data [...] Read more.
Mercury contamination from gold mining in the Amazon poses significant environmental and health threats to the biome and its local populations. The recent expansion of non-industrial mining areas has severely impacted territories occupied by traditional communities. To address the lack of sampling data in the region and better understand mercury dynamics, this study used the probabilistic model SERAFM to estimate the mercury distribution and bioaccumulation in fish. The analysis covered 8,259 sub-basins across three major Amazonian basins: the Branco, Tapajós and Xingu rivers. The findings revealed increasing downstream mercury levels, with notable accumulations in the main watercourses influenced by methylation processes and mining releases. The projected concentrations showed that an average of 27.47% of the sub-basins might not comply with Brazilian regulations, rising to 52.38% in the Branco and Tapajós river basins separately. The risk assessment of fish consumption based on the projections highlighted high mercury exposure levels among traditional communities, particularly indigenous populations, with an average of 49.79% facing an extremely high risk in the Branco and Tapajós river basins. This study demonstrated SERAFM’s capacity to fill information gaps in the Amazon while underscoring the need for enhanced data collection, culturally sensitive interventions and regulatory updates to mitigate mercury contamination in gold mining-affected areas. Full article
(This article belongs to the Special Issue Mercury Cycling and Health Effects)
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<p>Map of the study area highlighting the three modeled river basins, including subdivisions of the Branco River basin.</p>
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<p>Diagram representing risk categories based on methylmercury daily intakes.</p>
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<p>Modeled mercury concentrations in non-piscivorous (<b>a</b>) and piscivorous fish (<b>b</b>) for the Rio Branco river basin (<b>1</b>), the Tapajós river basin (<b>2</b>) and the Xingu river basin (<b>3</b>).</p>
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<p>Map combining projections of mercury bioaccumulation in fish and mining site distribution, wetland and riparian areas within the Rio Branco River basin (<b>a</b>), the Tapajós river basin (<b>b</b>) and the Xingu River basin (<b>c</b>).</p>
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<p>Map showing the potential risk of each sub-basin in the Branco River basin for male riverine populations (<b>a</b>) and male indigenous populations (<b>b</b>) compared with the locations of indigenous villages, based on the model’s projected results and risk categories.</p>
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<p>Map showing the potential risk of each sub-basin in the Tapajós River basin for male riverine populations (<b>a</b>) and male indigenous populations (<b>b</b>) compared with the locations of indigenous villages, based on the model’s projected results and risk categories.</p>
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21 pages, 19155 KiB  
Article
Water Balance and the Moist Planetary Boundary Layer Driven by Land Use and Land Cover Change across the Amazon Basin
by Celso Bandeira de Melo Ribeiro, Binayak P. Mohanty, Otto Corrêa Rotunno Filho, Eduarda Trindade Filgueiras, Luciano Nobrega Rodrigues Xavier and Afonso Augusto Magalhães de Araújo
Water 2023, 15(23), 4052; https://doi.org/10.3390/w15234052 - 22 Nov 2023
Cited by 1 | Viewed by 1375
Abstract
Despite the overall extension of the Amazon Basin (approximately 6,000,000 km2),which encompasses such a complex ecosystem and territories belonging to seven different nations, it is worth mentioning that environmental assessments related to changes in land use and land cover (LULC) in [...] Read more.
Despite the overall extension of the Amazon Basin (approximately 6,000,000 km2),which encompasses such a complex ecosystem and territories belonging to seven different nations, it is worth mentioning that environmental assessments related to changes in land use and land cover (LULC) in this region are often conducted respecting geopolitical boundaries associated with each country or taking into account the so-called Amazon biome. With the purpose of prospecting the intricate and hidden hydrological patterns, we undertake an in-depth evaluation of the water balance along the 2001–2021 time span across the whole basin, whose behavior depends on the features deriving from the metamorphoses in land use and land cover. To accomplish that task, the influence of the components of the water balance, namely rainfall and evapotranspiration, jointly with the terrestrial topographic mapping, are examined to investigate the interactions among the physical mechanisms that make up the hydrological cycle and the corresponding physical hydrological processes triggered by deforestation and reforestation in the region. More specifically, the modeling approach was rigorously designed to also consider, separately or not, Negro, Solimões, Madeira, Tapajós and Xingu hydrographic sub-basins, which are the most important ones of the Amazon Basin. The results highlight that in the southern region of the Amazon, specifically within the Madeira river sub-basin, the lowest forest coverage is observed (56.0%), whereas in the northern Negro river sub-basin, the most notable forest coverage is observed (85.0%). The most preserved forest areas, such as the Negro and Solimões river sub-basins, with percentages of 81.9% and 74.2%, respectively, have higher annual rates of precipitation and evapotranspiration over time. On the other hand, regions that suffered the most intense deforestation along the time period studied, such as the Madeira, Tapajós and Xingu sub-basins, have lower annual rates of precipitation and evapotranspiration, with preservation percentages of 54.6%, 62.6% and 70.7%, respectively. As the pace of deforestation slowed between 2003 and 2013, annual precipitation rates increased by 12.0%, while evapotranspiration decreased by 2.0%. The hydrological findings of this paper highlight th predominant role of the forest in the context of the global water balance of the Amazon Basin and the potential to also produce distinct impacts within different parts of the basin in terms of having more or less rainfall and evapotranspiration. In addition, those variabilities in the hydrological operational components and mechanisms due to changes in land cover and land use also reveal the potential impacts that could be expected in the surrounding areas, closer or farther, notably beyond the limits of the Amazon Basin. Full article
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<p>Schematic representation of the work flow for the applied methodology.</p>
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<p>Main sub-basins that make up the Amazon Basin.</p>
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<p>Land cover changes within the borders of the Amazon Basin based on classification procedures adopted by MapBiomas: (<b>a</b>) 2001 (on the left) and (<b>b</b>) 2021 (on the right).</p>
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<p>Roads within the Brazilian Amazon jointly with the land use and land cover in the Amazon region.</p>
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<p>Dynamics of forest cover featuring gains and losses for the five main sub-basins (Negro, Tapajós, Xingu, Madeira and Solimões) of the Amazon river basin along the 2001–2021 time period.</p>
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<p>Transition map of the most expressive LULC classes in the Amazon Basin.</p>
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<p>Dynamics and evolution of P and ET accumulated over the years (2001–2021) in the Amazon Basin and in its main sub-basins: (<b>a</b>) monthly cumulative precipitation for each sub-basin versus Amazon Basin; (<b>b</b>) monthly cumulative evapotranspiration for each sub-basin versus Amazon Basin; (<b>c</b>) monthly temporal variability of the difference between P and ET for each sub-basin in contrast to the Amazon Basin (red dotted line).</p>
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<p>Comparing the average P and ET over Amazon Basin in 2001–2011 and 2012–2021 time periods.</p>
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<p>Average monthly spatial distribution of P based on CHIRPS for the Amazon Basin.</p>
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<p>Average monthly spatial distribution of ET based on MODIS-MOD16A2 for the Amazon Basin.</p>
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20 pages, 10433 KiB  
Article
A Modeling Approach for Analyzing the Hydrological Impacts of the Agribusiness Land-Use Scenarios in an Amazon Basin
by Zandra A. Cunha, Carlos R. Mello, Samuel Beskow, Marcelle M. Vargas, Jorge A. Guzman and Maíra M. Moura
Land 2023, 12(7), 1422; https://doi.org/10.3390/land12071422 - 16 Jul 2023
Cited by 5 | Viewed by 1337
Abstract
The Xingu River Basin (XRB) in the Brazilian Amazon region has a great relevance to the development of northern Brazil because of the Belo Monte hydropower plant and its crescent agribusiness expansion. This study aimed to evaluate the potential of the Lavras Simulation [...] Read more.
The Xingu River Basin (XRB) in the Brazilian Amazon region has a great relevance to the development of northern Brazil because of the Belo Monte hydropower plant and its crescent agribusiness expansion. This study aimed to evaluate the potential of the Lavras Simulation of the Hydrology (LASH) model to represent the main hydrological processes in the XRB and simulate the hydrological impacts in the face of land-use change scenarios. Following the trend of the most relevant agribusiness evolution in the XRB, four agribusiness scenarios (S) were structured considering the increase in grasslands (S1: 50% over the native forest; S2: 100% over the native forest) and soybean plantations (S3: 50% over the native forest; S4: 100% over native forest). Average hydrographs were simulated, and the frequency duration curves (FDC) and average annual values of the main hydrological components for each scenario were compared. The results showed that, in general, changes in land use based on deforestation in the XRB would lead to an increase in flood streamflow and a reduction in baseflow. The increases in direct surface runoff varied from 4.4% for S1 to 29.8% for S4 scenarios. The reduction in baseflow varied from −1.6% for S1 to −4.9% for S2. These changes were reduced when the entire XRB was analyzed, but notable for the sub-basins in its headwater region, where the scenarios were more effective. Full article
(This article belongs to the Section Land, Soil and Water)
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<p>Location of the Xingu River basin and the digital elevation model, rain-gauge, and weather stations, and fluviometric stations used in this study.</p>
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<p>Köppen-type climate (<b>a</b>), soil classes (<b>b</b>), and land-use classes (<b>c</b>) in the XRB.</p>
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<p>Spatial distribution of the agribusiness scenarios in XRB ((<b>a</b>) S<sub>0</sub>; (<b>b</b>) S<sub>1</sub>; (<b>c</b>) S<sub>2</sub>; (<b>d</b>) S<sub>3</sub>; and (<b>e</b>) S<sub>4</sub>).</p>
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<p>Observed and estimated daily hydrographs and respective hyetographs for calibration and validation of LASH model (<b>a</b>), observed and estimated FDC for XRB (<b>b</b>), and observed and estimated hydrographs for IRB (Proxy Basin Test) (<b>c</b>).</p>
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<p>Variations in (<b>a</b>) mean annual streamflow; and (<b>b</b>) actual annual evapotranspiration resulting from the sensitivity analysis of LASH regarding the vegetation-related parameters for XRB.</p>
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<p>Variations in the FDC derived from the hydrographs estimated by the LASH model for the XRB considering alterations in the vegetation-related parameters.</p>
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<p>Comparison of the hydrographs estimated by the LASH model for S<sub>0</sub> and hydrographs simulated by the model for S<sub>1</sub> and S<sub>2</sub> scenarios.</p>
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<p>Comparison of the hydrographs estimated by the LASH model for S<sub>0</sub> and hydrographs simulated S<sub>3</sub> and S<sub>4</sub> scenarios.</p>
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<p>Hydrographs simulated by LASH at the sub-basins 44 (<b>a</b>) and 80 (<b>b</b>) considering S<sub>1</sub> and S<sub>2</sub> compared to the hydrograph estimated for S<sub>0</sub> in the same sub-basins.</p>
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26 pages, 10595 KiB  
Article
Regionalization of Climate Change Simulations for the Assessment of Impacts on Precipitation, Flow Rate and Electricity Generation in the Xingu River Basin in the Brazilian Amazon
by Edmundo Wallace Monteiro Lucas, Fabrício Daniel dos Santos Silva, Francisco de Assis Salviano de Souza, David Duarte Cavalcante Pinto, Heliofábio Barros Gomes, Helber Barros Gomes, Mayara Christine Correia Lins and Dirceu Luís Herdies
Energies 2022, 15(20), 7698; https://doi.org/10.3390/en15207698 - 18 Oct 2022
Cited by 6 | Viewed by 1858
Abstract
This study applied regionalization techniques on future climate change scenarios for the precipitation over the Xingu River Basin (XRB) considering the 2021–2080 horizon, in order to assess impacts on the monthly flow rates and possible consequences for electricity generation at the Belo Monte [...] Read more.
This study applied regionalization techniques on future climate change scenarios for the precipitation over the Xingu River Basin (XRB) considering the 2021–2080 horizon, in order to assess impacts on the monthly flow rates and possible consequences for electricity generation at the Belo Monte Hydroelectric Power Plant (BMHPP). This is the fourth largest hydroelectric power plant in the world, with a generating capacity of 11,233 MW, and is located in the Brazilian Amazon. Two representative concentration pathways (RCP 4.5 and RCP 8.5) and an ensemble comprising four general circulation models (CanESM2, CNRM-CM5, MPI-ESM-LR and NORESM1-M) were used. The projections based on both scenarios indicated a considerable decrease in precipitation during the rainy season and a slight increase during the dry season relative to the reference period (1981–2010). According to the results, a reduction in the flow rates in Altamira and in the overall potential for power generation in the BMHPP are also to be expected in both analyzed periods (2021–2050 and 2051–2180). The RCP 4.5 scenario resulted in milder decreases in those variables than the RCP 8.5. Conforming to our findings, a reduction of 21.3% in the annual power generation at the BMHPP is expected until 2080, with a corresponding use of 38.8% of the maximum potential of the facility. These results highlight the need for investments in other renewable energy sources (e.g., wind and solar) in order to compensate for the upcoming losses in the BMHPP production. Full article
(This article belongs to the Section A: Sustainable Energy)
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<p>Geographical location of the XRB. Source: [<a href="#B22-energies-15-07698" class="html-bibr">22</a>].</p>
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<p>Resolution grid over the Amazonian area used to establish the relations between predictor (reanalysis) and predictand (surface observations) data.</p>
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<p>Climatology of monthly precipitation in Altamira for the 1979–2010 period. The different curves correspond to observed data and simulations by the aforementioned models, as well as their ensemble.</p>
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<p>Scatter plot for the simulated (ensemble) and observed monthly precipitation in Altamira for the 1979–2010 period.</p>
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<p>Differences in the climatology of the monthly precipitation over the XRB between the ensemble simulations and the observed data (ensemble minus observation), in mm/period, for the 1979–2010 period.</p>
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<p>Differences in the climatology of the monthly precipitation over the XRB between the ensemble simulations and the observed data (ensemble minus observation), in mm/period, for the 1979–2010 period.</p>
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<p>Projected seasonal deviations in the precipitation over the XRB, in mm/period, for the 2021–2050 period, according to the RCP 4.5 (<b>a</b>) and RCP 8.5 (<b>b</b>) scenarios.</p>
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<p>Projected seasonal deviations in the precipitation over the XRB, in mm/period, for the 2021–2050 period, according to the RCP 4.5 (<b>a</b>) and RCP 8.5 (<b>b</b>) scenarios.</p>
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<p>Projected annual deviation in the precipitation over the XRB, in mm/period, for the 2021–2050 period, according to the RCP 4.5 (<b>a</b>) and RCP 8.5 (<b>b</b>) scenarios.</p>
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<p>The same as in <a href="#energies-15-07698-f006" class="html-fig">Figure 6</a>, but for the 2051–2080 period.</p>
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<p>The same as in <a href="#energies-15-07698-f007" class="html-fig">Figure 7</a>, but for the 2051–2080 period.</p>
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<p>The monthly mean precipitation in the period of 1981–2010 (black) in Altamira and the projections for the 2021–2050 (<b>a</b>) and 2051–2080 (<b>b</b>) periods, based on the RCP 4.5 (blue) and the RCP 8.5 (green) scenarios.</p>
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<p>Monthly climatology of precipitation (bars) and flow rate (line) at Altamira based on the period 1981–2010.</p>
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<p>The observed monthly mean flow rate in the period of 1981–2010 (black) in Altamira and the ones projected for the 2021–2050 (<b>a</b>) and 2051–2080 (<b>b</b>) periods, based on the RCP 4.5 (blue) and the RCP 8.5 (green) scenarios.</p>
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<p>The observed flow permanence curve in the reference period of 1981–2010 (black) in Altamira and the ones projected for the 2021–2050 (<b>a</b>) and 2051–2080 (<b>b</b>) periods, based on the RCP 4.5 (blue) and the RCP 8.5 (green) scenarios.</p>
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<p>Estimates of the monthly mean generation potential at Belo Monte based on the flow rates observed in the reference period (1981–2010) and on the ones projected for the 2021–2050 (<b>a</b>) and 2051–2080 (<b>b</b>) periods, based on the RCP 4.5 (blue) and the RCP 8.5 (green) scenarios.</p>
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<p>Variations in the projections of precipitation (P) and flow rate (Q) in Altamira and of energy generation (E) at Belo Monte, for the 2021–2050 (left) and 2051–2080 (right) periods, based on the RCP 4.5 (<b>a</b>) and the RCP 8.5 (<b>b</b>) scenarios.</p>
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12 pages, 1069 KiB  
Article
Aquatic and Semiaquatic Heteroptera (Hemiptera: Insecta) Distribution in Streams on the Cerrado–Amazon Ecotone in Headwaters of Xingu River
by Iluany Silva-Costa, Nubia França Silva Giehl, Ully Mattilde Pozzobom, Anderson André Carvalho-Soares, José Max Barbosa Oliveira-Junior, Helena Soares Ramos Cabette and Karina Dias-Silva
Arthropoda 2023, 1(1), 13-24; https://doi.org/10.3390/arthropoda1010004 - 13 Sep 2022
Cited by 1 | Viewed by 2645
Abstract
The modification of landscapes surrounding water bodies leads to changes in limnological characteristics and decreased aquatic biodiversity, such as fish and macroinvertebrates. Aquatic insects are sensitive to changes in aquatic ecosystems and quickly respond to those changes. The aim of this paper was [...] Read more.
The modification of landscapes surrounding water bodies leads to changes in limnological characteristics and decreased aquatic biodiversity, such as fish and macroinvertebrates. Aquatic insects are sensitive to changes in aquatic ecosystems and quickly respond to those changes. The aim of this paper was to evaluate the relationship between the compositions of aquatic and semi-aquatic Heteroptera with environmental variables along an environmental gradient in streams at the headwaters of the Xingu River, Brazil. We collected samples from 12 streams belonging to the Suiá-Miçú river basin and tributaries of the Xingu River, in September (dry season), 2008. The Suiá-Miçú river is one of the tributaries on the right bank of the Xingu River, and it is located in the ecotone between the Cerrado and the Amazon rainforest in the area characterized as the “arc of deforestation’’. Insects were sampled in fixed 100 m transections and divided into 20 segments of 5 meters each. To assess the habitat integrity in each stream, the habitat integrity index (HII) was applied. The following environmental variables were measured: electrical conductivity, turbidity, depth, and the normalized difference vegetation index (NDVI). The ordering of species composition was performed with the principal coordinate analysis (PCoA), and the relationship between environmental variables and composition was performed using a Mantel test. Of the 263 individuals collected, distributed in 8 families, there were 20 genera, of these, 12 were from Nepomorpha and 8 from Gerromorpha. The most abundant genera were Limnocoris (n = 121) and Rhagovelia (n = 32). Naucoridae was the most diverse family. Together, the environmental variables explained ~50% of the species distribution (r = 0.49; p = 0.001). These results reinforce the efficacy of aquatic Heteroptera to monitor environmental conditions. Here, in particular, the responses of this group to variations in landscape metrics, environmental integrity, and water variables together demonstrate that it can be useful to indicate the quality of habitat in streams. Full article
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<p>Study area and sampling sites from the upper Xingu River basin, Brazil, satellite image based on normalized difference vegetation index (NDVI). Composition false color bands 5/4/3—spatial resolution of 30 m (LANDSAT 8, 2017).</p>
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<p>PcoA analysis of the similarity between investigated sites due to Heteroptera community in Xingu River basin streams in the Cerrado–Amazon ecotone, Brazil.</p>
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12 pages, 3253 KiB  
Article
Connections among Land Use, Water Quality, Biodiversity of Aquatic Invertebrates, and Fish Behavior in Amazon Rivers
by Rodrigo Silva de Sousa, Gilmar Clemente Silva, Thiago Bazzan, Fernando de la Torre, Caroline Nebo, Diógenes Henrique Siqueira-Silva, Sheila Cardoso-Silva, Marcelo Luiz Martins Pompêo, Teresa Cristina Brazil de Paiva, Flávio Teixeira da Silva and Daniel Clemente Vieira Rêgo da Silva
Toxics 2022, 10(4), 182; https://doi.org/10.3390/toxics10040182 - 7 Apr 2022
Cited by 5 | Viewed by 2703
Abstract
Rivers in the Amazon have among the greatest biodiversity in the world. The Xingu River, one of the tributaries of the Amazon River, has a length of 1640 km, draining 510,000 km2 in one of the most protected regions on the planet. [...] Read more.
Rivers in the Amazon have among the greatest biodiversity in the world. The Xingu River, one of the tributaries of the Amazon River, has a length of 1640 km, draining 510,000 km2 in one of the most protected regions on the planet. The Middle Xingu region in Brazil has been highly impacted by mining and livestock farming, leading to habitat fragmentation due to altered water quality. Therefore, comparing two rivers (the preserved Xingu River and the impacted Fresco River) and their confluence, the aims of the present study were to (1) assess the land uses in the hydrographic basin; (2) determine the water quality by measurements of turbidity, total solids, and metals (Cd, Cu, Fe, Mn, Pb, Zn, and Hg); (3) compare the zooplankton biodiversity; and (4) to evaluate the avoidance behavior of fish (Astyanax bimaculatus) when exposed to waters from the Xingu and Fresco Rivers. Zooplankton were grouped and counted down to the family level. For the analysis of fish avoidance, a multi-compartment system was used. The forest class predominated at the study locations, accounting for 57.6%, 60.8%, and 63.9% of the total area at P1XR, P2FR, and P3XFR, respectively, although since 1985, at the same points, the forest had been reduced by 31.3%, 25.7%, and 27.9%. The Xingu River presented almost 300% more invertebrate families than the Fresco River, and the fish population preferred its waters (>50%). The inputs from the Fresco River impacted the water quality of the Xingu River, leading to reductions in local invertebrate biodiversity and potential habitats for fish in a typical case of habitat fragmentation due to anthropic factors. Full article
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Graphical abstract

Graphical abstract
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<p>Study area and locations of the three sites for collection of water and aquatic invertebrates. Three rivers are shown: the Xingu River and the Fresco River, in the municipality of São Félix do Xingu, Pará state, and the Branco River, in the municipality of Ourilândia do Norte, Pará state, Brazil. Source image data: Google Image ©2022 TerraMetrics.</p>
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<p>Map showing the spatial distribution of land use classes and vegetation cover in the study area in the municipality of São Félix do Xingu, Pará state, Brazil. The red rectangle in the lower right-hand corner indicates an extensive mining area near the Branco River, a tributary of the Fresco River.</p>
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<p>PCA components plot (based on the correlation matrix) for the waters of the Xingu River (XR) and the Fresco River (FR), considering the following variables: Mn, Zn, avoidance (AVO), total solids (TS), turbidity (TB), area with forest (FOR), aquatic invertebrate abundance (ABU), and aquatic invertebrate diversity (DIV).</p>
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<p>Distributions of <span class="html-italic">A. bimaculatus</span> (twospot <span class="html-italic">Astyanax</span>) fish in the control assay (using well water) and in the assay with exposure to river water (C1 and C2 = P1XR; C3 and C4 = P3XFR; C5 and C6 = P2FR).</p>
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26 pages, 10882 KiB  
Article
Long-Term Spatiotemporal Variation of Droughts in the Amazon River Basin
by Franklin Paredes-Trejo, Humberto Alves Barbosa, Jason Giovannettone, T. V. Lakshmi Kumar, Manoj Kumar Thakur and Catarina de Oliveira Buriti
Water 2021, 13(3), 351; https://doi.org/10.3390/w13030351 - 30 Jan 2021
Cited by 20 | Viewed by 5812
Abstract
The Amazon River Basin (ARB) plays an important role in the hydrological cycle at the regional and global scales. According to the Intergovernmental Panel on Climate Change (IPCC), the incidence and severity of droughts could increase in this basin due to human-induced climate [...] Read more.
The Amazon River Basin (ARB) plays an important role in the hydrological cycle at the regional and global scales. According to the Intergovernmental Panel on Climate Change (IPCC), the incidence and severity of droughts could increase in this basin due to human-induced climate change. Therefore, the assessment of the impacts of extreme droughts in the ARB is of vital importance to develop appropriate drought mitigation strategies. The purpose of this study is to provide a comprehensive characterization of dry spells and extreme drought events in terms of occurrence, persistence, spatial extent, severity, and impacts on streamflow and vegetation in the ARB during the period 1901–2018. The Standardized Precipitation-Evapotranspiration Index (SPEI) at multiple time scales (i.e., 3, 6, and 12 months) was used as a drought index. A weak basin-wide drying trend was observed, but there was no evidence of a trend in extreme drought events in terms of spatial coverage, intensity, and duration for the period 1901–2018. Nevertheless, a progressive transition to drier-than-normal conditions was evident since the 1970s, coinciding with different patterns of coupling between the El Niño/Southern Oscillation (ENSO) phenomenon and the Pacific Decadal Oscillation (PDO), Atlantic Multidecadal Oscillation (AMO), and Madden–Julian Oscillation (MJO) as well as an increasing incidence of higher-than-normal surface air temperatures over the basin. Furthermore, a high recurrence of short-term drought events with high level of exposure to long-term drought conditions on the sub-basins Ucayali, Japurá-Caquetá, Jari, Jutaí, Marañón, and Xingu was observed in recent years. These results could be useful to guide social, economic, and water resource policy decision-making processes in the Amazon basin countries. Full article
(This article belongs to the Special Issue Global Changes in Drought Frequency and Severity)
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<p>The study area: (<b>a</b>) the hydrographic network; (<b>b</b>) mean annual rainfall from the Climate Hazards Group InfraRed Precipitation with Stations (CHIRPS) [<a href="#B55-water-13-00351" class="html-bibr">55</a>] for the reference period 2000–2018; (<b>c</b>) sub-basins of the ARB according to Mayorga et al. [<a href="#B52-water-13-00351" class="html-bibr">52</a>] where 1, Amazonas-Solimões; 2, Macapá; 3, Marajó-Pará; 4, Jari; 5, Xingu; 6, Paru de Este; 7, Maicuru; 8, Curuá-Una; 9, Tapajós; 10, Curuá; 11, Trombetas-Nhamundá; 12, Mamuru; 13, Ilha Tupinambarana; 14, Uatumã; 15, Urubu; 16, Madeira; 17, Madeirinha; 18, Negro; 19, Manacapuru; 20, Purus; 21, Badajós; 22, Coari; 23, Tefé; 24, Japurá-Caquetá; 25, Juruá; 26, Jutaí; 27, Içá-Putumayo; 28, Jandiatuba; 29, Javari-Yavarí; 30, Napo; 31, Nanay; 32, Marañón; and 33, Ucayali; (<b>d</b>) terrain elevation based on 250-m Digital Elevation Model—Shuttle Radar Topographic Mission (DEM-SRTM) images [<a href="#B56-water-13-00351" class="html-bibr">56</a>].</p>
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<p>Simplified flowchart of the activities that were developed for this study.</p>
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<p>Long-term temporal variation of the area-averaged values of SPEI at a: (<b>a</b>,<b>b</b>) 3-month time scale (SPEI3); (<b>c</b>,<b>d</b>) 6-month time scale (SPEI6); and (<b>e</b>,<b>f</b>) 12-month time scale (SPEI12) in the ARB during 1901–2018. The calculation of the average is based on the median. The red line indicates the fitted line. The reference period is 1901–2018.</p>
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<p>Percentage of area under drought conditions according to the values of: (<b>a</b>,<b>b</b>) SPEI3; (<b>c</b>,<b>d</b>) SPEI6; and (<b>e</b>,<b>f</b>) SPEI12 in the ARB during 1901-2018. The calculation of the drought spatial coverage is based on the number of pixels with values of SPEI ≤ −1.00, regardless of the time scale used. The red line indicates fitted line. The reference period is 1901–2018.</p>
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<p>Drought spatial coverage of the extreme drought events based on the SPEI3, SPEI6, and SPEI12 time series in the ARB during 1901–2018. The calculation of the drought spatial coverage is based on the number of pixels with values of SPEI ≤ −1.00, regardless of the time scale used.</p>
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<p>Spatial distribution of the intensity [-] and the temporal persistence [%] during the occurrence of the: (<b>a</b>,<b>b</b>) SPEI3-based extreme drought events; (<b>c</b>,<b>d</b>) SPEI6-based extreme drought events; and (<b>e</b>,<b>f</b>) SPEI12-based extreme drought events over the ARB during 1901–2018. The main features of the extreme drought events are shown in <a href="#water-13-00351-t002" class="html-table">Table 2</a>. The temporal persistence is the percentage of the total duration of the extreme drought event on a pixel-level.</p>
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<p>Temporal variation of the area-averaged values over the entire ARB of the: (<b>a</b>) SPEI6 against EVI during 2001–2018; (<b>c</b>) SPEI3 against T2Ma during 1980–2018; (<b>e</b>) SPEI3 against RA during 1998–2018 in the ARB; and the squared wavelet coherence between the times series shown in: (<b>b</b>) <a href="#water-13-00351-f007" class="html-fig">Figure 7</a>a; (<b>d</b>) <a href="#water-13-00351-f007" class="html-fig">Figure 7</a>c; and (<b>f</b>) <a href="#water-13-00351-f007" class="html-fig">Figure 7</a>e. Thick contours enclose the areas with correlations statistically significant at 95% confidence level against red noise. Semitransparent areas indicate the ‘cone of influence’ where the edge effects become important; therefore, they were not analyzed [<a href="#B73-water-13-00351" class="html-bibr">73</a>]. The relative phase relationship is shown as arrows (with in-phase pointing right, anti-phase pointing left, SPEI6 or SPEI3 leading auxiliary variable by 90° pointing straight down, and auxiliary variable leading SPEI6 or SPEI3 by 90 pointing straight up).</p>
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<p>The monthly streamflow anomalies [m<sup>3</sup>/s] at the streamflow gauges shown in (<b>h</b>) as: SF1 (<b>a1</b>), SF2 (<b>a2</b>), SF3 (<b>a3</b>), SF4 (<b>a4</b>), SF5 (<b>a5</b>), SF6 (<b>a6</b>), SF7 (<b>a7</b>), SF8 (<b>a8</b>), SF9 (<b>a9</b>), SF10 (<b>a10</b>), SF11 (<b>a11</b>), SF12 (<b>a12</b>), and SF13 (<b>a13</b>). The monthly rainfall anomalies [mm/month] at the rainfall gauges shown in (<b>h</b>) as: G1 (<b>b1</b>), G2 (<b>b2</b>), G3 (<b>b3</b>), G4 (<b>b4</b>), and G5 (<b>b5</b>). The temporal persistence of drought conditions [%] during the occurrence of the SPEI12-based extreme drought events: E6 (<b>c</b>), E7 (<b>d</b>), E8 (<b>e</b>), E9 (<b>f</b>), and E10 (<b>g</b>). The spatial distribution of the streamflow [blue] and rainfall [red] gauges is shown in (<b>h</b>). The month of start and end for each event is shown in panels (<b>a1</b>) to (<b>b5</b>). The negative anomalies less than -2 in panels (<b>a1</b>) to (<b>b5</b>) are shown with red bars. Base period for the calculation of anomalies: 1974–2013.</p>
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<p>The spatial distribution during 1975–2018 of (<b>a</b>) the number of dry spells [NDS] based on the SPEI3, SPEI6, and SPEI12, respectively; (<b>b</b>) the average duration of the dry spells [DDS] based on the SPEI3, SPEI6, and SPEI12, respectively. The average duration of the dry spells is shown in months.</p>
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<p>The spatial distribution of (<b>a</b>) the SPEI pixels according to results from cluster analysis applied to the number of dry spells [NDS], average duration of the dry spells [DDS], spatial localization of SPEI pixels, land cover, type of climate, and terrain elevation; (<b>b</b>) the land cover type; (<b>c</b>) the terrain elevation in m a.s.l.; and (<b>d</b>) the type of climate based on the Köppen-Geiger climate classification [<a href="#B46-water-13-00351" class="html-bibr">46</a>]. NDS and DDS are based on the time series of SPEI3, SPEI6, and SPEI12 for the period 1975–2018. The spatial localization refers to longitude and latitude in degrees for each SPEI pixel. The land cover map that is referred to is from 2018.</p>
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14 pages, 3339 KiB  
Article
Evapotranspiration and Precipitation over Pasture and Soybean Areas in the Xingu River Basin, an Expanding Amazonian Agricultural Frontier
by Gabriel de Oliveira, Jing M. Chen, Guilherme A. V. Mataveli, Michel E. D. Chaves, Jing Rao, Marcelo Sternberg, Thiago V. dos Santos and Carlos A. C. dos Santos
Agronomy 2020, 10(8), 1112; https://doi.org/10.3390/agronomy10081112 - 1 Aug 2020
Cited by 7 | Viewed by 3681
Abstract
The conversion from primary forest to agriculture drives widespread changes that have the potential to modify the hydroclimatology of the Xingu River Basin. Moreover, climate impacts over eastern Amazonia have been strongly related to pasture and soybean expansion. This study carries out a [...] Read more.
The conversion from primary forest to agriculture drives widespread changes that have the potential to modify the hydroclimatology of the Xingu River Basin. Moreover, climate impacts over eastern Amazonia have been strongly related to pasture and soybean expansion. This study carries out a remote-sensing, spatial-temporal approach to analyze inter- and intra-annual patterns in evapotranspiration (ET) and precipitation (PPT) over pasture and soybean areas in the Xingu River Basin during a 13-year period. We used ET estimates from the Moderate Resolution Imaging Spectroradiometer (MODIS) and PPT estimates from the Tropical Rainfall Measurement Mission (TRMM) satellite. Our results showed that the annual average ET in the pasture was ~20% lower than the annual average in soybean areas. We show that PPT is notably higher in the northern part of the Xingu River Basin than the drier southern part. ET, on the other hand, appears to be strongly linked to land-use and land-cover (LULC) patterns in the Xingu River Basin. Lower annual ET averages occur in southern areas where dominant LULC is savanna, pasture, and soybean, while more intense ET is observed over primary forests (northern portion of the basin). The primary finding of our study is related to the fact that the seasonality patterns of ET can be strongly linked to LULC in the Xingu River Basin. Further studies should focus on the relationship between ET, gross primary productivity, and water-use efficiency in order to better understand the coupling between water and carbon cycling over this expanding Amazonian agricultural frontier. Full article
(This article belongs to the Special Issue Climate Change, Agriculture, and Food Security)
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<p>(<b>a</b>) Location of the Xingu River Basin within the Brazilian territory, (<b>b</b>) Amazon and Cerrado biomes, (<b>c</b>) adjacent Brazilian states of Pará and Mato Grosso, and (<b>d</b>) spatial location of the study area. The base map is a Moderate Resolution Imaging Spectroradiometer (MODIS) MOD09A1 product color composite R6G2B1 for the year 2019.</p>
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<p>Land use and land cover in the Xingu River Basin for the years 2004 and 2014. Maps were generated using the TerraClass [<a href="#B30-agronomy-10-01112" class="html-bibr">30</a>] and MapBiomas [<a href="#B31-agronomy-10-01112" class="html-bibr">31</a>] mappings.</p>
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<p>Pasture and soybean areas in the Xingu River Basin for the 2001–2013 period. The map was obtained by using the TerraClass [<a href="#B31-agronomy-10-01112" class="html-bibr">31</a>] and MapBiomas [<a href="#B32-agronomy-10-01112" class="html-bibr">32</a>] mappings and visual inspection based on TM/Landsat 5 images.</p>
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<p>(<b>a</b>) Intra-annual boxplot for the monthly average precipitation (PPT), (<b>b</b>) interannual boxplot for the monthly average PPT in the Xingu River Basin for the 2001–2013 period, and (<b>c</b>) spatial distribution of annual average PPT and monthly average PPT in the Xingu River Basin for the 2001–2013 period.</p>
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<p>(<b>a</b>) Intra-annual boxplot for the monthly average evapotranspiration (ET), (<b>b</b>) interannual boxplot for the monthly average ET in the Xingu River Basin for the 2001–2013 period, and (<b>c</b>) spatial distribution of annual average PPT and monthly average ET in the Xingu River Basin for the 2001–2013 period.</p>
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<p>(<b>a</b>,<b>b</b>) Interannual/intra-annual boxplots for the monthly average PPT and (<b>c</b>,<b>d</b>) interannual/intra-annual boxplots for the monthly average ET in pasture and soybean areas in the Xingu River Basin during the 2001–2013 period.</p>
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8 pages, 4499 KiB  
Data Descriptor
A New Multi-Temporal Forest Cover Classification for the Xingu River Basin, Brazil
by Margaret Kalacska, Oliver Lucanus, Leandro Sousa and J. Pablo Arroyo-Mora
Data 2019, 4(3), 114; https://doi.org/10.3390/data4030114 - 1 Aug 2019
Cited by 5 | Viewed by 3529
Abstract
We describe a new multi-temporal classification for forest/non-forest classes for a 1.3 million square kilometer area encompassing the Xingu River basin, Brazil. This region is well known for its exceptionally high biodiversity, especially in terms of the ichthyofauna, with approximately 600 known species, [...] Read more.
We describe a new multi-temporal classification for forest/non-forest classes for a 1.3 million square kilometer area encompassing the Xingu River basin, Brazil. This region is well known for its exceptionally high biodiversity, especially in terms of the ichthyofauna, with approximately 600 known species, 10% of which are endemic to the river basin. Global and regional scale datasets do not adequately capture the rapidly changing land cover in this region. Accurate forest cover and forest cover change data are important for understanding the anthropogenic pressures on the aquatic ecosystems. We developed the new classifications with a minimum mapping unit of 0.8 ha from cloud free mosaics of Landsat TM5 and OLI 8 imagery in Google Earth Engine using a classification and regression tree (CART) aided by field photographs for the selection of training and validation points. Full article
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<p>Four classifications of forest cover for the Xingu river basin for (<b>a</b>) circa 1989, (<b>b</b>) circa 2000, (<b>c</b>) circa 2010, and (<b>d</b>) circa 2018 from Landsat TM5 and OLI 8 imagery. Boundaries of states, larger rivers, and landmarks including cities and the Jericoá rapids are shown for reference.</p>
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<p>Four classifications of forest cover for the Xingu river basin for (<b>a</b>) circa 1989, (<b>b</b>) circa 2000, (<b>c</b>) circa 2010, and (<b>d</b>) circa 2018 from Landsat TM5 and OLI 8 imagery. Boundaries of states, larger rivers, and landmarks including cities and the Jericoá rapids are shown for reference.</p>
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<p>Examples of field photographs used to train the visual interpretation of the imagery for selecting classification and regression tree (CART) classification training and validation points. * indicates the Northern zone between Vitória do Xingu and Sao Felix do Xingu, ** indicates the Southern sector (south of Castelo do Sonhos). 1: clearing of Arapujá Island across from Altamira*, 2: partially deciduous forest, sandy beach, and rocks*, 3: large patch of cleared forest*, 4: intact forest*, 5: homestead in Amazonia lowlands*, 6: small settlement*, 7: small household*, 8: larger settlement*, 9: large-scale deforestation*, 10: deforestation with secondary growth*, 11: large-scale deforestation*, 12: burned land prior to deforestation*, 13: homestead*, 14: large-scale deforestation*, 15: large-scale deforestation*, 16: aerial view north from the Jericoá rapids*, 17: aerial view from the Xadá rapids with deforestation on the unprotected side*, 18: aerial view of intact forest in protected area*, 19: aerial view of intact forest at the Iriri rapids*, 20: small-scale clearing at the Jericoá rapids*, 21: intact forest along the Culuene river**, 22: exposed soil for agriculture**, 23: cattle herd**, 24: Belo Monte dam*, 25: isolated forest patch in corn field**, 26: large corn field**, 27: plantation**, 28: extensive pasture land**, 29: extensive cotton field**, 30: recently cut forest**, 31: pasture with forest patch **, 32: pasture with isolated trees**, 33: cornfield with forest patch**.</p>
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<p>Examples of field photographs used to train the visual interpretation of the imagery for selecting classification and regression tree (CART) classification training and validation points. * indicates the Northern zone between Vitória do Xingu and Sao Felix do Xingu, ** indicates the Southern sector (south of Castelo do Sonhos). 1: clearing of Arapujá Island across from Altamira*, 2: partially deciduous forest, sandy beach, and rocks*, 3: large patch of cleared forest*, 4: intact forest*, 5: homestead in Amazonia lowlands*, 6: small settlement*, 7: small household*, 8: larger settlement*, 9: large-scale deforestation*, 10: deforestation with secondary growth*, 11: large-scale deforestation*, 12: burned land prior to deforestation*, 13: homestead*, 14: large-scale deforestation*, 15: large-scale deforestation*, 16: aerial view north from the Jericoá rapids*, 17: aerial view from the Xadá rapids with deforestation on the unprotected side*, 18: aerial view of intact forest in protected area*, 19: aerial view of intact forest at the Iriri rapids*, 20: small-scale clearing at the Jericoá rapids*, 21: intact forest along the Culuene river**, 22: exposed soil for agriculture**, 23: cattle herd**, 24: Belo Monte dam*, 25: isolated forest patch in corn field**, 26: large corn field**, 27: plantation**, 28: extensive pasture land**, 29: extensive cotton field**, 30: recently cut forest**, 31: pasture with forest patch **, 32: pasture with isolated trees**, 33: cornfield with forest patch**.</p>
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<p>Open rivers wider than a single pixel (i.e., &gt;30 m) such as in the photograph on the left are included in the classifications. Users are cautioned, however, in examining the surface water class for narrow rivers/streams (&lt;30 m), especially those with dense overgrowth, such as in the photograph on the right. The classifications underestimate the area for these smaller rivers/streams.</p>
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8 pages, 6150 KiB  
Data Descriptor
UAV-Based 3D Point Clouds of Freshwater Fish Habitats, Xingu River Basin, Brazil
by Margaret Kalacska, Oliver Lucanus, Leandro Sousa, Thiago Vieira and Juan Pablo Arroyo-Mora
Data 2019, 4(1), 9; https://doi.org/10.3390/data4010009 - 10 Jan 2019
Cited by 5 | Viewed by 4618
Abstract
Dense 3D point clouds were generated from Structure-from-Motion Multiview Stereo (SFM-MVS) photogrammetry for five representative freshwater fish habitats in the Xingu river basin, Brazil. The models were constructed from Unmanned Aerial Vehicle (UAV) photographs collected in 2016 and 2017. The Xingu River is [...] Read more.
Dense 3D point clouds were generated from Structure-from-Motion Multiview Stereo (SFM-MVS) photogrammetry for five representative freshwater fish habitats in the Xingu river basin, Brazil. The models were constructed from Unmanned Aerial Vehicle (UAV) photographs collected in 2016 and 2017. The Xingu River is one of the primary tributaries of the Amazon River. It is known for its exceptionally high aquatic biodiversity. The dense 3D point clouds were generated in the dry season when large areas of aquatic substrate are exposed due to the low water level. The point clouds were generated at ground sampling distances of 1.20–2.38 cm. These data are useful for studying the habitat characteristics and complexity of several fish species in a spatially explicit manner, such as calculation of metrics including rugosity and the Minkowski–Bouligand fractal dimension (3D complexity). From these dense 3D point clouds, substrate complexity can be determined more comprehensively than from conventional arbitrary cross sections. Full article
(This article belongs to the Special Issue Open Data and Robust & Reliable GIScience)
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<p>Locations within the Xingu river basin where the five datasets representing a range of freshwater fish habitat complexity and diversity were collected. Background image illustrates the extent of forest cover (green) in the region from 2017, overlaid on a satellite image mosaic from Landsat 8 OLI.</p>
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<p>Dense 3D point clouds of the five freshwater habitats in the Xingu river basin. (<b>A</b>) Jatoba river; (<b>B</b>) Culuene rapids; (<b>C</b>) Retroculus island; (<b>D</b>) Iriri rapids; and (<b>E</b>) Xada rapids.</p>
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<p>Dense 3D point clouds of the five freshwater habitats in the Xingu river basin. (<b>A</b>) Jatoba river; (<b>B</b>) Culuene rapids; (<b>C</b>) Retroculus island; (<b>D</b>) Iriri rapids; and (<b>E</b>) Xada rapids.</p>
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28 pages, 9108 KiB  
Article
Freshwater Fish Habitat Complexity Mapping Using Above and Underwater Structure-From-Motion Photogrammetry
by Margaret Kalacska, Oliver Lucanus, Leandro Sousa, Thiago Vieira and Juan Pablo Arroyo-Mora
Remote Sens. 2018, 10(12), 1912; https://doi.org/10.3390/rs10121912 - 29 Nov 2018
Cited by 32 | Viewed by 9625
Abstract
Substrate complexity is strongly related to biodiversity in aquatic habitats. We illustrate a novel framework, based on Structure-from-Motion photogrammetry (SfM) and Multi-View Stereo (MVS) photogrammetry, to quantify habitat complexity in freshwater ecosystems from Unmanned Aerial Vehicle (UAV) and underwater photography. We analysed sites [...] Read more.
Substrate complexity is strongly related to biodiversity in aquatic habitats. We illustrate a novel framework, based on Structure-from-Motion photogrammetry (SfM) and Multi-View Stereo (MVS) photogrammetry, to quantify habitat complexity in freshwater ecosystems from Unmanned Aerial Vehicle (UAV) and underwater photography. We analysed sites in the Xingu river basin, Brazil, to reconstruct the 3D structure of the substrate and identify and map habitat classes important for maintaining fish assemblage biodiversity. From the digital models we calculated habitat complexity metrics including rugosity, slope and 3D fractal dimension. The UAV based SfM-MVS products were generated at a ground sampling distance (GSD) of 1.20–2.38 cm while the underwater photography produced a GSD of 1 mm. Our results show how these products provide spatially explicit complexity metrics, which are more comprehensive than conventional arbitrary cross sections. Shallow neural network classification of SfM-MVS products of substrate exposed in the dry season resulted in high accuracies across classes. UAV and underwater SfM-MVS is robust for quantifying freshwater habitat classes and complexity and should be chosen whenever possible over conventional methods (e.g., chain-and-tape) because of the repeatability, scalability and multi-dimensional nature of the products. The SfM-MVS products can be used to identify high priority freshwater sectors for conservation, species occurrences and diversity studies to provide a broader indication for overall fish species diversity and provide repeatability for monitoring change over time. Full article
(This article belongs to the Special Issue Drone Remote Sensing)
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<p>Study sites in the Xingu River basin, Brazil. Service layer credits: ESRI, HERE, Garmin, OpenStreetMap contributors and the GIS community.</p>
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<p>Example of the seasonal difference in exposed substrate between the dry season (<b>a</b>) and wet season. (<b>b</b>) from the Iriri and Xingu Rivers’ confluence.</p>
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<p>Examples of the habitat classes described in <a href="#remotesensing-10-01912-t001" class="html-table">Table 1</a>. (<b>a</b>) sand and pebbles with a large proportion of sand; (<b>b</b>) sand and pebbles; (<b>c</b>) cobbles; (<b>d</b>) gravel assemblages; (<b>e</b>) medium boulders; (<b>f</b>) large boulders; (<b>g</b>) solid rock (bedrock); (<b>h</b>) solid rock (textured).</p>
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<p>Example of morphological diversity commonly associated with the habitat classes in the Xingu River basin. (<b>a</b>) <span class="html-italic">Hemiodus unimaculatus</span>, (<b>b</b>) <span class="html-italic">Pseudoloricaria laeviscula</span>, (<b>c</b>) <span class="html-italic">Potamotrygon orbigny</span>, (<b>d</b>) <span class="html-italic">Retroculus xinguensis</span>, (<b>e</b>) <span class="html-italic">Geophagus argyrostictus</span>, (<b>f</b>) <span class="html-italic">Teleocichla monogramma</span>, (<b>g</b>) <span class="html-italic">Peckoltia sabaji</span>, (<b>h</b>) <span class="html-italic">Crenicichla</span> sp. ‘<span class="html-italic">xingu 1</span>’, (<b>i</b>) <span class="html-italic">Potamotrygon leopoldi</span>, (<b>j</b>) <span class="html-italic">Sartor respectus</span>, (<b>k</b>) <span class="html-italic">Teleocichla preta</span>, (<b>l</b>) <span class="html-italic">Ossubtus xinguensis</span>, (<b>m</b>) <span class="html-italic">Hypancistrus zebra</span>, (<b>n</b>) <span class="html-italic">Cichla melaniae</span>, (<b>o</b>) <span class="html-italic">Hoplias aimara</span>, (<b>p</b>) <span class="html-italic">Baryancistrus xanthellus</span>, (<b>q</b>) <span class="html-italic">Leporinus tigrinus</span>, (<b>r</b>) <span class="html-italic">Hypomasticus julii</span>, (<b>s</b>) <span class="html-italic">Peckoltia vittata</span>, (<b>t</b>) <span class="html-italic">Scobinancistrus aureatus</span>, (<b>u</b>) <span class="html-italic">Spectracanthicus punctatissimus</span>, (<b>v</b>) <span class="html-italic">Tometes kranponhah</span>, (<b>w</b>) <span class="html-italic">Hydrolycus tatauaia</span>. Photographs are not to scale.</p>
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<p>(<b>a</b>) Example of a UAV photograph acquired from 30 m altitude at the Jatobá site used in the SfM-MVS analyses. (<b>b</b>) Example of an underwater photograph collected with the camera housing at the water surface (Jatobá) and the lens facing nadir (Scale not shown).</p>
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<p>Flow chart of the analytical steps to generate the products (3D point cloud, textured mesh, DSM and orthomosaic) used as inputs to the calculation of the habitat complexity metrics (slope, rugosity, spatial correlation, 3D fractal dimension). For photographs collected from the UAV, the refractive index correction was applied to the DSM prior to the calculation of the habitat complexity metrics. The sparse and dense point clouds from the Xadá study site are shown to the right of the flowchart along with the position of the photographs used for the analysis. Examples of the DSM and orthomosaic products are shown in the results section.</p>
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<p>(<b>a</b>) Pansharpened GeoEye satellite image (50 cm panchromatic, 2 m multispectral) acquired 11 August 2017 of the Jatobá study site. (<b>b</b>) UAV photograph acquired 2 August 2017. (<b>c</b>) Densified 3D point cloud (1.2 cm GSD) generated from UAV SfM-MVS analyses using 375 photographs. The substrate (medium and large boulder classes) is visible in the shallow clear water. The interactive point cloud is available at: <a href="https://bit.ly/riojatoba" target="_blank">https://bit.ly/riojatoba</a>.</p>
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<p>DSM and orthomosaic produced from the densified 3D point cloud (<a href="#remotesensing-10-01912-f006" class="html-fig">Figure 6</a>c).</p>
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<p>From the UAV based SfM-MVS products at the Jatobá site: (<b>a</b>) Submerged DSM with refractive index correction applied, (<b>b</b>) Slope, (<b>c</b>) Rugosity expressed as the surface to planar ratio.</p>
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<p>From the underwater SfM-MVS at the Jatobá site, (<b>a</b>) Orthomosaic at a GSD of 1 mm. (<b>b</b>) Submerged DSM at a GSD of 1 mm. The lines represent the location of the three transects used to calculate virtual chain-and-tape SRI and (<b>c</b>) Rugosity expressed as the surface to planar ratio at a GSD of 1 mm, (<b>d</b>) Submerged DSM resampled to 3 cm, (<b>e</b>) Rugosity expressed as the surface to planar ratio at 3 cm resolution, (<b>f</b>) Submerged DSM resampled to 15 cm, (<b>g</b>) Rugosity expressed as the surface to planar ratio at 15 cm resolution, (<b>h</b>) Cross sections of the three virtual chain-and-tape transects.</p>
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<p>Orthomosaics generated from the UAV photographs of (<b>a</b>) Cachoeira Iriri, (<b>b</b>) Retroculus site, (<b>c</b>) Cachoeira Culuene and (<b>d</b>) Cachoeira do Xadá. Examples of the habitat classes ranging from sand and pebbles to large boulders exposed in the dry season. Areas of deep/turbid water and white water can also be seen. The four interactive 3D point clouds are available at: <a href="https://bit.ly/iriri3D" target="_blank">https://bit.ly/iriri3D</a>, <a href="https://bit.ly/retroculus" target="_blank">https://bit.ly/retroculus</a>, <a href="https://bit.ly/culuene" target="_blank">https://bit.ly/culuene</a>, <a href="https://bit.ly/xadarapids" target="_blank">https://bit.ly/xadarapids</a>.</p>
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<p>Proportion of substrate classes at Culuene, Iriri, Retroculus and Xadá as determined from the UAV SfM-MVS products and a neural network classification based on substrate exposed by the low water level of the dry season.</p>
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<p>Map of substrate classes from the UAV SfM-MVS products and neural network classification for (<b>a</b>) Iriri; (<b>b</b>) Culuene; (<b>c</b>) Xadá and (<b>d</b>) Retroculus.</p>
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<p>The Minkowski–Bouligand fractal dimension (D) as a measure of 3D habitat complexity. Each bar represents one of the first five habitat classes from <a href="#remotesensing-10-01912-t001" class="html-table">Table 1</a>. SP = Sand/pebbles, CO = Cobbles, TR = Textured rock, MB = Medium boulders, LB = Large boulders, SR = Solid rock. Dotted lines represent the mean for the site.</p>
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<p>Diagram illustrating the effect on GSD of varying either the focal length or the distance between the camera and the substrate.</p>
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<p>Given the same distance from the substrate, same focal point and focal length, increasing the aperture (smaller f-number) reduces the DoF. The section of the substrate that falls within the grey box would be in focus. In this illustration, an aperture of <span class="html-italic">f</span>/5.6 results in the entire area of interest of the substrate being in focus, while with <span class="html-italic">f</span>/2.8 the top and base of the boulders would be out of focus.</p>
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<p>(<b>a</b>) Violin plots of the shutter speed (blue) and aperture (grey) used to take the photographs for calculating the within model uncertainty (Canon 1DX Mark II) (<a href="#remotesensing-10-01912-f0A1" class="html-fig">Figure A1</a>) and for the stream survey (Canon 5D Mark III) (<a href="#remotesensing-10-01912-f010" class="html-fig">Figure 10</a>). Focal length for both cameras was 24 mm. (<b>b</b>) Violin plots of the shutter speed from the UAV photographs from the five study sites (<a href="#remotesensing-10-01912-f001" class="html-fig">Figure 1</a>).</p>
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<p>(<b>A</b>) Photograph of underwater rock structure used to determine the uncertainty in the dense 3D point cloud. P1–P4 represent the locknuts used as targets. (<b>B</b>) Dense 3D point cloud of the rock structure in ‘a.’ Scale bar is in meters. The interactive point cloud is available at: <a href="https://bit.ly/calib_rock" target="_blank">https://bit.ly/calib_rock</a>.</p>
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<p>(<b>A</b>) Photograph of underwater rock structure used to determine the uncertainty in the dense 3D point cloud. P1–P4 represent the locknuts used as targets. (<b>B</b>) Dense 3D point cloud of the rock structure in ‘a.’ Scale bar is in meters. The interactive point cloud is available at: <a href="https://bit.ly/calib_rock" target="_blank">https://bit.ly/calib_rock</a>.</p>
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<p>Overall confusion matrix from the neural network classification for (<b>a</b>) Iriri; (<b>b</b>) Culuene; (<b>c</b>) Xadá; (<b>d</b>) Retroculus. PO = Podostemaceae, CO = Cobbles, BR = Bedrock, SH = Shallow water, SD = Shadow, VG = Vegetation, TW = Turbid water, WW = White water, SA = Sand, RA = Gravel Assemblage. Y axis represents the target class, X axis represents the output class.</p>
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<p>Overall confusion matrix from the neural network classification for (<b>a</b>) Iriri; (<b>b</b>) Culuene; (<b>c</b>) Xadá; (<b>d</b>) Retroculus. PO = Podostemaceae, CO = Cobbles, BR = Bedrock, SH = Shallow water, SD = Shadow, VG = Vegetation, TW = Turbid water, WW = White water, SA = Sand, RA = Gravel Assemblage. Y axis represents the target class, X axis represents the output class.</p>
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<p>Overall confusion matrix from the neural network classification for (<b>a</b>) Iriri; (<b>b</b>) Culuene; (<b>c</b>) Xadá; (<b>d</b>) Retroculus. PO = Podostemaceae, CO = Cobbles, BR = Bedrock, SH = Shallow water, SD = Shadow, VG = Vegetation, TW = Turbid water, WW = White water, SA = Sand, RA = Gravel Assemblage. Y axis represents the target class, X axis represents the output class.</p>
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11 pages, 1574 KiB  
Article
Assessment of Mercury Concentration in Turtles (Podocnemis unifilis) in the Xingu River Basin, Brazil
by Marina Teófilo Pignati, Juarez Carlos Brito Pezzuti, Larissa Costa de Souza, Marcelo De Oliveira Lima, Wanderlei Antonio Pignati and Rosivaldo De Alcântara Mendes
Int. J. Environ. Res. Public Health 2018, 15(6), 1185; https://doi.org/10.3390/ijerph15061185 - 6 Jun 2018
Cited by 7 | Viewed by 3700
Abstract
Many studies on mercury contamination in aquatic biota deal with the effect of consuming metal-contaminated organisms on human health. In this study, we examined the factors that cause mercury contamination in Podocnemis unifilis in the Xingu River Basin of Mato Grosso and Pará [...] Read more.
Many studies on mercury contamination in aquatic biota deal with the effect of consuming metal-contaminated organisms on human health. In this study, we examined the factors that cause mercury contamination in Podocnemis unifilis in the Xingu River Basin of Mato Grosso and Pará States, Brazil. We quantified by atomic absorption spectroscopy with cold vapor the total mercury (THg) content in the liver and muscle samples of 50 Podocnemis unifilis specimens collected from the basin. The liver and muscle samples contained 134.20 ± 119.30 ng g−1 THg and 24.86 ± 26.36 ng g−1 THg, respectively. Each chelonian or meal has, on average, 5.34× more Hg than the highest level established as acceptable. From the results it can be inferred that, given the weekly consumption of chelonians, the riverine and indigenous communities in the Xingu River Basin are at risk of chronic consumption of Hg in amounts beyond the acceptable limit. The potential high risk to the health of this population is evident; however, the risk classification needs to be further studied. Full article
(This article belongs to the Section Environmental Health)
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Figure 1

Figure 1
<p>Map of the sampling localities in the Xingu River Basin of Mato Grosso and Pará States, Brazil (black triangles).</p>
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<p>Principal coordinates analysis (PCO) of THg concentration (ng g<sup>−1</sup>) in the liver (black triangle) and muscle (grey circle) of <span class="html-italic">Podocnemis unifilis.</span></p>
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<p>Total mercury concentration (THg) (ng g<sup>−1</sup>) in the liver (<b>a</b>) and muscle (<b>b</b>) of <span class="html-italic">Podocnemis unifilis</span> across sampling localities.</p>
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706 KiB  
Article
Biocultural Diversity in the Southern Amazon
by Michael Heckenberger
Diversity 2010, 2(1), 1-16; https://doi.org/10.3390/d2010001 - 24 Dec 2009
Cited by 9 | Viewed by 9554
Abstract
Recent studies in Amazonia historical ecology have revealed substantial diversity and dynamic change in coupled natural human systems. In the southern Amazon, several headwater basins show evidence of substantial pre-Columbian landscape modification, particularly in areas historically dominated by speakers of the Arawak language [...] Read more.
Recent studies in Amazonia historical ecology have revealed substantial diversity and dynamic change in coupled natural human systems. In the southern Amazon, several headwater basins show evidence of substantial pre-Columbian landscape modification, particularly in areas historically dominated by speakers of the Arawak language family. The headwater basin of the Xingu River, the easternmost of these areas occupied by Arawak-speaking peoples, has revealed such a complex built environment. This discussion examines settlement pattern and land-use, which have implications for understanding the dynamics of natural-human systems in the Upper Xingu basin and other areas across the transitional forests of the southern Amazon. Full article
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Figure 1
<p>Study area (box) in the Upper Xingu basin (black line). Note: the Parque Indígena do Xingu is marked by a thin black line, other indigenous areas in light green, and upland open woodlands and areas of agro-pastoral development in pink.</p>
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<p>Core area of the northern cluster showing ritual political hub site (X13) and two major residential centers, located to the north (X6) and south (X18) of X13 (roads are denoted by red lines and peripheral ditches by black lines). Note: the Ipatse stream course appears as a meandering blue-black line along the eastern edge of the forested upland area (green), which is bounded to the west by the marshy lowlands of the braided Angahuku River (solid dark blue/black). Inset: Kuikuro village in 2003, which corresponds to pink dot with blue radial paths to the left of photo.</p>
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<p>Core area of southern cluster showing principal center (X11), showing peripheral semi-circular ditches and radial roads, and primary satellite settlements, marked as black dots (note: vegetation “scars” associated with major settlements).</p>
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