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24 pages, 14977 KiB  
Article
Metabolite and Transcriptomic Changes Reveal the Cold Stratification Process in Sinopodophyllum hexandrum Seeds
by Rongchun Ning, Caixia Li, Tingting Fan, Tingting Ji and Wenhua Xu
Plants 2024, 13(19), 2693; https://doi.org/10.3390/plants13192693 - 26 Sep 2024
Abstract
Sinopodophyllum hexandrum (Royle) Ying, an endangered perennial medicinal herb, exhibits morpho-physiological dormancy in its seeds, requiring cold stratification for germination. However, the precise molecular mechanisms underlying this transition from dormancy to germination remain unclear. This study integrates transcriptome and plant hormone-targeted metabolomics techniques [...] Read more.
Sinopodophyllum hexandrum (Royle) Ying, an endangered perennial medicinal herb, exhibits morpho-physiological dormancy in its seeds, requiring cold stratification for germination. However, the precise molecular mechanisms underlying this transition from dormancy to germination remain unclear. This study integrates transcriptome and plant hormone-targeted metabolomics techniques to unravel these intricate molecular regulatory mechanisms during cold stratification in S. hexandrum seeds. Significant alterations in the physicochemical properties (starch, soluble sugars, soluble proteins) and enzyme activities (PK, SDH, G-6-PDH) within the seeds occur during stratification. To characterize and monitor the formation and transformation of plant hormones throughout this process, extracts from S. hexandrum seeds at five stratification stages of 0 days (S0), 30 days (S1), 60 days (S2), 90 days (S3), and 120 days (S4) were analyzed using UPLC-MS/MS, revealing a total of 37 differential metabolites belonging to seven major classes of plant hormones. To investigate the biosynthetic and conversion processes of plant hormones related to seed dormancy and germination, the transcriptome of S. hexandrum seeds was monitored via RNA-seq, revealing 65,372 differentially expressed genes associated with plant hormone synthesis and signaling. Notably, cytokinins (CKs) and gibberellins (GAs) exhibited synergistic effects, while abscisic acid (ABA) displayed antagonistic effects. Furthermore, key hub genes were identified through integrated network analysis. In this rigorous scientific study, we systematically elucidate the intricate dynamic molecular regulatory mechanisms that govern the transition from dormancy to germination in S. hexandrum seeds during stratification. By meticulously examining these mechanisms, we establish a solid foundation of knowledge that serves as a scientific basis for facilitating large-scale breeding programs and advancing the artificial cultivation of this highly valued medicinal plant. Full article
(This article belongs to the Special Issue Metabolomics in Medicinal Plants and Agricultural Research)
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<p>Changes in seed morphological, physiological, and biochemical features of <span class="html-italic">S</span>. <span class="html-italic">hexandrum</span> at five different stratification stages: Morphology of seed embryo (<b>A</b>,<b>B</b>). Changes in embryo rate and germination rate (<b>C</b>). Contents of soluble protein, starch, and soluble sugar (<b>D</b>–<b>F</b>). Activities of pyruvate kinase (PK), glucose-6-phosphate dehydrogenase (G-6-PDH), and succinate dehydrogenase (SDH) (<b>G</b>–<b>I</b>). Values are average with their standard deviations (<span class="html-italic">n</span> = 3) with three biological replicates. Different lowercase represents a significant difference (<span class="html-italic">p</span> &lt; 0.05).</p>
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<p>The metabolite analysis of <span class="html-italic">S. hexandrum</span> seeds during different stratification stages: the heatmap visualizes the total metabolites with each metabolite’s content normalized for complete linkage hierarchical clustering, where red indicates high abundance and green indicates low abundance (<b>A</b>). Bar graph analysis of total DEMs (<b>B</b>). PCA analysis of metabolites (<b>C</b>). DEMs Venn diagram (<b>D</b>). Correlation heat map between DEMs (<b>E</b>).</p>
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<p>KEGG pathway analysis of DEMs in SM1_vs_SM0 (<b>A</b>). KEGG pathway analysis of DEMs in SM2_vs_SM0 (<b>B</b>). KEGG pathway analysis of DEMs in SM3_vs_SM0 (<b>C</b>). KEGG pathway analysis of DEMs in SM4_vs_SM0 (<b>D</b>). The Rich factor refers to the ratio of the number of differentially expressed genes enriched in a particular pathway to the total number of genes annotated to that pathway. A higher Rich factor indicates a greater degree of enrichment. A smaller Q-value indicates a more significant enrichment.</p>
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<p>Analysis of total Unigenes and annotation status of Unigenes in various databases (<b>A</b>). Distribution and probability density display of stratified sample data (<b>B</b>). Assessment of biological replication correlation among samples using r. The closer the absolute value of r is to 1 (depicted in redder shades), the stronger the correlation (<b>C</b>). Legend shows the number of annotated orthologous clusters and genes, with different clusters represented by distinct colors (<b>D</b>). The horizontal axis represents the secondary GO terms, while the vertical axis represents the number of genes annotated to each GO term (<b>E</b>). The horizontal axis represents the functional categories of KOG IDs, while the vertical axis represents the number of genes within each category. The categories are distinguished by unique colors, and the legend provides the code and its functional description (<b>F</b>).</p>
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<p>Volcano plot of differentially expressed genes between ST1_vs_ST0 (<b>A</b>), ST2_vs_ST0 (<b>B</b>), ST3_vs_ST0 (<b>C</b>), and ST4_vs_ST0 (<b>D</b>); red and green dots represent the significantly upregulated and downregulated genes. Heat map of differentially expressed genes based on hierarchical clustering analysis between ST1_vs_ST0 (<b>E</b>), ST2_vs_ST0 (<b>F</b>), ST3_vs_ST0 (<b>G</b>), and ST4_vs_ST0 (<b>H</b>) as follows: darker colors represent higher expression levels of differentially expressed genes, while lighter colors indicate the opposite.</p>
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<p>DEGs enriched on different GO terms and KEGG pathways: GO terms of DEGs in ST1_vs_ST0 (<b>A</b>). GO terms of DEGs in ST2_vs_ST0 (<b>B</b>). GO terms of DEGs in ST3_vs_ST0 (<b>C</b>). GO terms of DEGs in ST4_vs_ST0 (<b>D</b>). KEGG pathway analysis of DEGs in ST1_vs_ST0 (<b>E</b>). KEGG pathway analysis of DEGs in ST2_vs_ST0 (<b>F</b>). KEGG pathway analysis of DEGs in ST3_vs_ST0 (<b>G</b>). KEGG pathway analysis of DEGs in ST4_vs_ST0 (<b>H</b>). The Rich factor refers to the ratio of the number of differentially expressed genes enriched in a particular pathway to the total number of genes annotated to that pathway. A higher Rich factor indicates a greater degree of enrichment. A smaller Q-value indicates a more significant enrichment.</p>
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<p>DEGs enriched on different GO terms and KEGG pathways: GO terms of DEGs in ST1_vs_ST0 (<b>A</b>). GO terms of DEGs in ST2_vs_ST0 (<b>B</b>). GO terms of DEGs in ST3_vs_ST0 (<b>C</b>). GO terms of DEGs in ST4_vs_ST0 (<b>D</b>). KEGG pathway analysis of DEGs in ST1_vs_ST0 (<b>E</b>). KEGG pathway analysis of DEGs in ST2_vs_ST0 (<b>F</b>). KEGG pathway analysis of DEGs in ST3_vs_ST0 (<b>G</b>). KEGG pathway analysis of DEGs in ST4_vs_ST0 (<b>H</b>). The Rich factor refers to the ratio of the number of differentially expressed genes enriched in a particular pathway to the total number of genes annotated to that pathway. A higher Rich factor indicates a greater degree of enrichment. A smaller Q-value indicates a more significant enrichment.</p>
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<p>The KEGG combined analysis of DEMs and DEGs: Combined analysis of DEGs and DEMs involved in S1_vs_S0 (<b>A</b>). Combined analysis of DEGs and DEMs involved in S2_vs_S0 (<b>B</b>). Combined analysis of DEGs and DEMs involved in S3_vs_S0 (<b>C</b>). Combined analysis of DEGs and DEMs involved in S4_vs_S0 (<b>D</b>). The horizontal coordinate represents the enrichment factor of the pathway in different histologies, and the vertical coordinate represents the name of the KEGG pathway; the gradient of red-yellow-green represents the change in the significance of enrichment from high-moderate-low, indicated by <span class="html-italic">p</span>-value; the shape of bubbles represents different omics, and the size of the bubbles represents the number of DEMs or DEGs—the larger the number, the bigger the point.</p>
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<p>Weighted gene co-expression network analysis (WGCNA) of genes during stratification stages: Clustering dendrogram of samples based on their Euclidean distance (<b>A</b>). Hierarchical cluster tree showing co-expression modules identified by WGCNA and heat map analysis of the samples with different modules (<b>B</b>). Module–metabolite association; each row corresponds to a module, and each column represents a specific hormone (<b>C</b>). The color of each cell at the row–column intersection indicates the correlation coefficient between a module and the hormones.</p>
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<p>The co-expression network analysis of DEMs and DEGs based on Pearson correlation: Interaction network of DEGs and DEMs involved in ST1_vs_ST0 (<b>A</b>). Interaction network of DEGs and DEMs in ST2_vs_ST0 (<b>B</b>). Interaction network of DEGs and DEMs involved in ST3_vs_ST0 (<b>C</b>). Interaction network of DEGs and DEMs in ST4_vs_ST0 (<b>D</b>). Edges colored in pink and blue represent DEMs and DEGs, respectively; solid line and dotted line represent positive and negative correlations, The length of the lines in the network diagram does not have any practical significance. As determined by a Pearson correlation coefficient &gt; 0.80, <span class="html-italic">p</span> &lt; 0.05.</p>
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20 pages, 16168 KiB  
Article
Dynamic Monitoring and Analysis of Ecological Environment Quality in Arid and Semi-Arid Areas Based on a Modified Remote Sensing Ecological Index (MRSEI): A Case Study of the Qilian Mountain National Nature Reserve
by Xiuxia Zhang, Xiaoxian Wang, Wangping Li, Xiaodong Wu, Xiaoqiang Cheng, Zhaoye Zhou, Qing Ling, Yadong Liu, Xiaojie Liu, Junming Hao, Tingting Wang, Lingzhi Deng and Lisha Han
Remote Sens. 2024, 16(18), 3530; https://doi.org/10.3390/rs16183530 - 23 Sep 2024
Abstract
The ecosystems within the Qilian Mountain National Nature Reserve (QMNNR) and its surrounding areas have been significantly affected by changes in climate and land use, which have, in turn, constrained the region’s socio-economic development. This study investigates the regional characteristics and application requirements [...] Read more.
The ecosystems within the Qilian Mountain National Nature Reserve (QMNNR) and its surrounding areas have been significantly affected by changes in climate and land use, which have, in turn, constrained the region’s socio-economic development. This study investigates the regional characteristics and application requirements of the ecological environment in the arid and semi-arid zones of the reserve. In view of the saturated characteristics of NDVI in the reserve and the high-altitude saline-alkali environmental conditions, this study proposed a Modified Remote Sensing Ecology Index (MRSEI) by introducing the kernel NDVI and comprehensive salinity index (CSI). This approach enhances the applicability of the remote sensing ecological index. The temporal and spatial dynamics of ecological and environmental quality within the QMNNR from 2000 to 2022 were quantitatively assessed using the MRSEI. The effect of land use on ecological quality was quantified by analyzing the MRSEI contribution rate. The findings in this paper indicate that (1) in arid and semi-arid regions, the MRSEI provides a more precise representation of surface ecological environmental quality compared to the remote sensing ecological index (RSEI). The high correlation (R2 = 0.908) and significant difference between MRSEI and RSEI demonstrate that MRSEI enhances the accuracy of evaluating ecological environmental quality. The impact of land use on ecological quality was quantitatively assessed by analyzing the contribution rate of the MRSEI. (2) The ecological quality of the QMNNR exhibited an upward trend from 2000 to 2022, with an increase rate of 1.3 × 10−3 y−1. The area characterized by improved ecological and environmental quality constitutes approximately 53.68% of the total area. Conversely, the ecological quality of the degraded areas accounts for roughly 28.77%. (3) Among the various land use types, the improvement in ecological environmental quality within the reserve is primarily attributed to the expansion of forest and grassland areas, along with a reduction in unused land. Forest and grassland types account for over 90% of the total area classified with “good” and “excellent” ecological grades, whereas unused land types represent more than 44% of the total area classified with “poor” ecological grades. Overall, this study provides a valuable framework for analyzing ecological and environmental changes in arid and semi-arid regions. Full article
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<p>Overview of the QMNNR.</p>
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<p>Strip and quantitative distribution of Landsat images in the QMNNR from 2000 to 2022. (<b>a</b>) Spatial distribution of Landsat images and (<b>b</b>) temporal distribution of Landsat images.</p>
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<p>Technical route.</p>
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<p>Overview of the test area.</p>
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<p>Diagnosis collinearity of ecological factors.</p>
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<p>Comparison of local details and textures of RSEI and MRSEI, NDVI, and kNDVI in test areas 1 and 2.</p>
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<p>Comparative analysis of NDVI and kNDVI during the growing season in the QMNNR in 2020.</p>
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<p>Changes in the MRSEI with the kNDVI, WET, LST, NDBSI, and CSI.</p>
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<p>(<b>a</b>) Correlation between MRSEI and RSEI and (<b>b</b>) difference spatial distribution.</p>
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<p>(<b>a</b>) The average value of MRSEI and the area proportion of the QMNNR and (<b>b</b>) Spatial distribution in the MRSEI from 2000 to 2022.</p>
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<p>MRSEI trend analysis for the QMNNR from 2000 to 2020.</p>
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<p>Contribution rates of various land use types in the QMNNR to MRSEI ratings in (<b>a</b>) 2000, (<b>b</b>) 2005, (<b>c</b>) 2010, (<b>d</b>) 2015, and (<b>e</b>) 2020, and (<b>f</b>) changes in MRSEI under the influence of cropland, forest, grassland, and other unused land.</p>
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<p>Correlation between CSI, NDBSI, and WET.</p>
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21 pages, 15098 KiB  
Article
An Evaluation of Ecosystem Quality and Its Response to Aridity on the Qinghai–Tibet Plateau
by Yimeng Yan, Jiaxi Cao, Yufan Gu, Xuening Huang, Xiaoxian Liu, Yue Hu and Shuhong Wu
Remote Sens. 2024, 16(18), 3461; https://doi.org/10.3390/rs16183461 - 18 Sep 2024
Abstract
Exploring the response of spatial and temporal characteristics of ecological quality change to aridity on the Qinghai–Tibet Plateau (QTP) can provide valuable information for regional ecological protection, water resource management, and climate change adaptation. In this study, we constructed the Remote Sensing Ecological [...] Read more.
Exploring the response of spatial and temporal characteristics of ecological quality change to aridity on the Qinghai–Tibet Plateau (QTP) can provide valuable information for regional ecological protection, water resource management, and climate change adaptation. In this study, we constructed the Remote Sensing Ecological Index (RSEI) and Standardized Precipitation Evapotranspiration Index (SPEI) based on the Google Earth Engine (GEE) platform with regional characteristics and completely analyzed the spatial and temporal variations of aridity and ecological quality on the QTP in the years 2000, 2005, 2010, 2015, and 2020. Additionally, we explored the responses of ecological quality to aridity indices at six different time scales. The Mann–Kendall test, correlation analysis, and significance test were used to study the spatial and temporal distribution characteristics of meteorological aridity at different time scales on the QTP and their impacts on the quality of the ecological environment. The results show that the ecological environmental quality of the QTP has a clear spatial distribution pattern. The ecological environment quality is significantly better in the south-east, while the Qaidam Basin and the west have lower ecological environment quality indices, but the overall trend of environmental quality is getting better. The Aridity Index of the QTP shows a differentiated spatial and temporal distribution pattern, with higher Aridity Indexes in the north-eastern and south-western parts of the plateau and lower Aridity Indexes in the central part of the plateau at shorter time scales. Monthly, seasonal, and annual-scale SPEI values showed an increasing trend. There is a correlation between aridity conditions and ecological quality on the QTP. The areas with significant positive correlation between the RSEI and SPEI in the study area were mainly concentrated in the south-eastern, south-western, and northern parts of the QTP, where the ecological quality of the environment is more seriously affected by meteorological aridity. Full article
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<p>The Qinghai–Tibet Plateau covers an area of about 2.5 × 10<sup>6</sup> km<sup>2</sup>. With an average altitude of about 4500 m, it is the source of many of China’s great rivers.</p>
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<p>Logical flow. First, the Qinghai–Tibet Plateau is selected as the study area, and the SPEI was calculated by obtaining the precipitation, temperature, and evaporation data. Second, the data required for constructing the RSEI were obtained from MODIS satellite data. Then, PCA analysis was carried out at GEE using NDVI, LST, WET, and NDBSI to obtain RSEI, and the correlation between RSEI and SPEI was also analyzed. Finally, the future trend of RSEI was analyzed. Sub-figure (<b>a</b>–<b>f</b>) the annual mean Standardized Precipitation Evapotranspiration Index (SPEI) values.</p>
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<p>(<b>a</b>–<b>f</b>) denote the spatio-temporal characteristics of SPEI on the QTP from 2000 to 2020 at different time scales. Note: The gray area in the figure is the Hengduan Mountains; SPEI data are missing.</p>
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<p>(<b>a</b>–<b>t</b>) Spatial and temporal characteristics of NDVI, WET, LST, and NDBSI on the QTP, 2000–2020. Where (<b>a</b>–<b>e</b>) denote the values of NDVI on the QTP for 2000–2020, (<b>f</b>–<b>j</b>) denote the values of LST on the QTP for 2000–2020, (<b>k</b>–<b>o</b>) denote the values of WET on the QTP for 2000–2020, and (<b>p</b>–<b>t</b>) denote the values of NDBSI on the QTP for 2000–2020.</p>
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<p>Spatial and temporal characteristics of RSEI on the Qinghai–Tibet Plateau in 2000, 2005, 2010, 2015, and 2020. (<b>a</b>–<b>e</b>) show the temporal and spatial distribution characteristics of RSEI in QTP. (<b>f</b>–<b>j</b>) show the total area (km<sup>2</sup>) of best, good, normal, bad, and worst levels in each studying period.</p>
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<p>(<b>a</b>,<b>b</b>) Trends of RSEI and their significance in the Tibetan Plateau, 2000–2020. (<b>a</b>) represents the spatial distribution of RSEI trend values. <a href="#remotesensing-16-03461-f006" class="html-fig">Figure 6</a>b represents the Z-value of the trend test. (<b>b</b>) can be classified as significant decline, nonsignificant decline, nonsignificant increase, and significant increase depending on the value of Z.</p>
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<p>Spatial correlation and significance test of RSEI and SPEI on the Tibetan Plateau. N-S-P-C: Not significantly positively correlated. S-P-C: Significantly positive correlation. E-S-P-C: Extremely significant positive correlation. E-S-N-C: Extremely significant negative correlation. S-N-C: Significantly negative correlation. N-S-N-C: Not significantly negatively correlated. (<b>a</b>–<b>f</b>) show the correlation and significance distribution characteristics of RSEI and SPEI in QTP. (<b>g</b>–<b>l</b>) show the total area (km<sup>2</sup>) of N-S-N-C, S-N-C, E-S-N-C, E-S-P-C, S-P-C, and N-S-P-C in each studying period.</p>
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<p>Hurst Index distribution of RSEI on the Tibetan Plateau and its future persistence characteristics.</p>
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19 pages, 4666 KiB  
Article
Quantifying Qiyi Glacier Surface Dirtiness Using UAV and Sentinel-2 Imagery
by Jiangtao Chen, Ninglian Wang, Yuwei Wu, Anan Chen, Chenlie Shi, Mingjie Zhao and Longjiang Xie
Remote Sens. 2024, 16(17), 3351; https://doi.org/10.3390/rs16173351 - 9 Sep 2024
Abstract
The glacier surface is composed not only of ice or snow but also of a heterogeneous mixture of various materials. The presence of light-absorbing impurities darkens the glacier surface, reducing local reflectance and thereby accelerating the glacier melting process. However, our understanding of [...] Read more.
The glacier surface is composed not only of ice or snow but also of a heterogeneous mixture of various materials. The presence of light-absorbing impurities darkens the glacier surface, reducing local reflectance and thereby accelerating the glacier melting process. However, our understanding of the spatial distribution of these impurities remains limited, and there is a lack of studies on quantifying the dirty degree of glacier surfaces. During the Sentinel satellite overpass on 21 August 2023, we used an ASD FieldSpec3 spectrometer to measure the reflectance spectra of glacier surfaces with varying degrees of dirtiness on the Qiyi glacier, Qinghai–Tibet Plateau. Using Multiple Endmember Spectral Mixture Analysis (MESMA), the Sentinel imagery was decomposed to generate fraction images of five primary ice surface materials as follows: coarse-grained snow, slightly dirty ice, moderately dirty ice, extremely dirty ice, and debris. Using unmanned aerial vehicle (UAV) imagery with a 0.05 m resolution, the primary ice surface was delineated and utilized as reference data to validate the fraction images. The findings revealed a strong correlation between the fraction images and the reference data (R2 ≥ 0.66, RMSE ≤ 0.21). Based on pixel-based classification from the UAV imagery, approximately 80% of the glacier surface is covered by slightly dirty ice (19.2%), moderately dirty ice (33.3%), extremely dirty ice (26.3%), and debris (1.2%), which significantly contributes to its darkening. Our study demonstrates the effectiveness of using Sentinel imagery in conjunction with MESMA to map the degree of glacier surface dirtiness accurately. Full article
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<p>(<b>a</b>) Location of the Qiyi glacier (red star). (<b>b</b>) A true-color RGB image (10 m resolution) of the glacier, with the blue curve outlining its boundary. Red circles represent spectral sampling points, yellow triangles indicate UAV ground control points, and pink rectangles delineate the validation areas. (<b>c</b>,<b>d</b>) are images of the glacier terminus taken on 31 July 2013, and 15 August 2023, respectively.</p>
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<p>(<b>a</b>) Spectral measurements were collected with a fiber optic probe ~1 m above the ice surface. (<b>b</b>) The actual measured spectral curves are depicted with solid black lines, while colored circles represent the reflectance values at the central wavelengths of Sentinel-2B bands (B2-B8A bands correspond to red to pink hues on the graph).</p>
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<p>Spectral curves after SRF conversion, where solid lines represent mean values and shaded areas denote standard deviations (<b>a</b>). Photographs of the following categories of ice are shown: (<b>b</b>) coarse-grained snow; (<b>c</b>) slightly dirty ice; (<b>d</b>) moderately dirty ice; (<b>e</b>) extremely dirty ice; and (<b>f</b>) supraglacial rivers. The spectrometer’s field of view is a ~50 cm diameter circle; a pen is placed for scale, aiming to provide readers with a sense of proportion for better comprehension.</p>
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<p>A comparison of measured reflectance and satellite products, where red pentagrams denote the sampling positions of the spectrometer. (<b>a</b>,<b>b</b>) represent relatively clean glacier surfaces, while (<b>c</b>,<b>d</b>) depict relatively dirty glacier surfaces. L2A denotes products produced by the ESA, FLAASH (10 m) signifies atmospheric correction through FLAASH, and L2A (Sen2cor) indicates correction via the Sen2cor plugin. SRF refers to spectral response function conversion, the green line represents the measured spectra, and L1C denotes ESA L1C products.</p>
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<p>(<b>a</b>) The UAV image and (<b>b</b>) the SVM-classified image.</p>
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<p>The final spectral endmembers for the following different glacier surface types: (<b>a</b>) coarse-grained snow; (<b>b</b>) slightly dirty ice; (<b>c</b>) moderately dirty ice; (<b>d</b>) extremely dirty ice; and (<b>e</b>) debris.</p>
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<p>Fraction images for the following five distinct ice surface types are presented: (<b>a</b>) coarse-grained snow; (<b>b</b>) slightly dirty ice; (<b>c</b>) moderately dirty ice; (<b>d</b>) extremely dirty ice; and (<b>e</b>) debris.</p>
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<p>A regression model was constructed to examine the relationship between MESMA fraction images and reference fraction (UAV images). The solid line illustrates the degree of fitting, while the shaded area represents the 95% confidence interval. The determination coefficient (R<sup>2</sup>) and root mean square error (RMSE) are presented, <span class="html-italic">n</span> = 330.</p>
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26 pages, 8669 KiB  
Article
Exploring the Relationship between Ecosystem Services and Sustainable Development Goals for Ecological Conservation: A Case Study in the Hehuang Valley of Qinghai-Tibet Plateau
by Hejie Wei, Ke Wang, Yu Ma, Qingxiang Meng, Yi Yang and Mengxue Liu
Diversity 2024, 16(9), 553; https://doi.org/10.3390/d16090553 - 5 Sep 2024
Abstract
With the increase in human activities and the acceleration of urbanization, over-exploitation of natural resources has led to a decline in ecosystem services (ESs), subsequently affecting the achievement of sustainable development goals (SDGs). As the key ecological zone of Qinghai-Tibet Plateau, the stability [...] Read more.
With the increase in human activities and the acceleration of urbanization, over-exploitation of natural resources has led to a decline in ecosystem services (ESs), subsequently affecting the achievement of sustainable development goals (SDGs). As the key ecological zone of Qinghai-Tibet Plateau, the stability and enhancement of ESs in the Hehuang Valley are crucial for achieving SDGs and biodiversity conservation. This study quantifies nine SDGs for the Hehuang Valley in the last twenty years. Four ecological models were utilized to compute key ESs: net primary productivity (NPP), water yield, soil retention, and sand fixation. Panel data were analyzed using a coupling coordination model to quantify the relationship between ESs and sustainable development level (SDL) in each county. Additionally, the Geographically and Temporally Weighted Regression (GTWR) model was employed to examine the correlation between ESs and SDL. The results indicate the following: (1) During the period, NPP and water yield first increased and then decreased. The capacity for soil retention and sand fixation showed an overall increase, highlighting substantial variability among counties in their ability to deliver these ESs. (2) The SDL of counties in the Hehuang Valley increased, with Xining City showing slightly higher SDL than other counties. (3) The overall coupling coordination degree among NPP, water yield, soil retention, sand fixation, and SDL in the Hehuang Valley exhibited an upward trend in the last twenty years. SDL demonstrated the highest coordination degree with NPP, followed by soil retention, water yield, and sand fixation. (4) Most counties in the Hehuang Valley exhibited a lag in SDL relative to NPP, water yield, and soil retention in the last twenty years. In the early stage, sand fixation and SDL were primarily lagging in SDL, while in the late stages, sand fixation lagged behind SDL. (5) During the period, there was an increasing negative correlation observed between the four ESs and SDL. The positive contribution of NPP and sand fixation in some counties gradually shifted to a negative effect, and the negative effect of water yield and soil retention on SDL intensified. The impact of human activities on ecosystem function hindered local SDL. This study offers scientific theoretical backing and practical recommendations for promoting SDL and biodiversity conservation in the Hehuang Valley. Full article
(This article belongs to the Special Issue Socioecology and Biodiversity Conservation—2nd Edition)
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<p>Location of the Hehuang Valley. Note: A represents Chengbei District; B represents Chengxi District; C represents Chengzhong District; D represents Chengdong District.</p>
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<p>Land Use Status of the Hehuang Valley in 2000 (<b>a</b>) and 2020 (<b>b</b>).</p>
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<p>Technical Route of the Study.</p>
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<p>ES Changes in the County Scale of Hehuang Valley in 2000, 2010, and 2020, Including NPP (<b>a</b>), Water Yield (<b>b</b>), Soil Retention (<b>c</b>), and Sand Fixation (<b>d</b>).</p>
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<p>Spatiotemporal Distribution of ESs in the Grid Scale of Hehuang Valley from 2000 to 2020.</p>
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<p>Spatiotemporal Distribution of SDL in the Counties of the Hehuang Valley from 2000 to 2020.</p>
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<p>Spatiotemporal Distribution of the Coupling Degree between ESs and SDL in the Counties of the Hehuang Valley from 2000 to 2020.</p>
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<p>Spatiotemporal Distribution of the CCD between ESs and SDL in the Counties of the Hehuang Valley from 2000 to 2020.</p>
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<p>Spatiotemporal Distribution of the Relative Development Degree between ESs and SDL in the Counties of the Hehuang Valley from 2000 to 2020. Note: (A) Represents ESs-lagging type; (B) Represents synchronized development of ESs and SDL; (C) Represents SDL-lagging type.</p>
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<p>Spatiotemporal Distribution of Correlation Levels between ESs and SDL in the Counties of the Hehuang Valley from 2000 to 2020.</p>
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13 pages, 8329 KiB  
Article
Soil Genesis of Alluvial Parent Material in the Qinghai Lake Basin (NE Qinghai–Tibet Plateau) Revealed Using Optically Stimulated Luminescence Dating
by Shuaiqi Zhang, Chongyi E, Xianba Ji, Ping Li, Qiang Peng, Zhaokang Zhang and Qi Zhang
Atmosphere 2024, 15(9), 1066; https://doi.org/10.3390/atmos15091066 - 3 Sep 2024
Viewed by 167
Abstract
Alluvial parent material soil is an important soil type found on the Qinghai–Tibet Plateau (QTP) in China. However, due to the limited age data for alluvial soils, the relationship between alluvial geomorphological processes and soil pedogenic processes remains unclear. In this study, three [...] Read more.
Alluvial parent material soil is an important soil type found on the Qinghai–Tibet Plateau (QTP) in China. However, due to the limited age data for alluvial soils, the relationship between alluvial geomorphological processes and soil pedogenic processes remains unclear. In this study, three representative alluvial parent material profiles on the Buha River alluvial plain in the Qinghai Lake Basin, northeast QTP, were analyzed using the optical luminescence (OSL) dating method. Combined with physical and chemical analyses of the soil, we further analyzed the pedogenic process of alluvial soil. The alluvial parent material of the Buha alluvial plain predominately yielded ages between 11.9 and 9.1 ka, indicating that the alluvial soil began to form during the early Holocene. The development of the alluvial soil on the first-order terrace presents characteristics of entisol with multiple burial episodes, mainly between 8.5 and 4.0 ka, responding to the warm and humid middle Holocene and high lake levels. Full article
(This article belongs to the Special Issue Paleoclimate Changes and Dust Cycle Recorded by Eolian Sediments)
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<p>Sampling sites of alluvial parent soil in the Qinghai Lake Basin. The inset map shows the study area in the Qinghai–Tibet Plateau within China.</p>
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<p>Photos of the profiles: (<b>a</b>) MH, (<b>b</b>) TJ, and (<b>c</b>) TJXS; geomorphic photos of the profiles: (<b>d</b>) MH, (<b>e</b>) TJ, and (<b>f</b>) TJXS; (<b>g</b>) satellite image data including the three soil profiles.</p>
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<p>Decay curve and growth curve of the sample TJXS-1 (<b>a</b>,<b>b</b>).</p>
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<p>Distribution of grain sizes of the alluvial parent soil in the studied profiles of the Qinghai Lake Basin.</p>
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<p>Schematic diagram of the soil’s genetic layers, including age, average particle size, organic matter content, and component content in the MH, TJ, and TJXS profiles.</p>
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<p>Schematic diagram of the soil’s genetic layers, including age, average particle size, organic matter content, and component content in the MH, TJ, and TJXS profiles.</p>
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<p>Distribution characteristics of soil particle size in MH, TJ, and TJXS upper profiles.</p>
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<p>(<b>A</b>) Reconstructed lake level based on the paleoshoreline [<a href="#B31-atmosphere-15-01066" class="html-bibr">31</a>] and (<b>B</b>) the low-frequency magnetic susceptibility (LFMS) of the ND profile, Qinghai Lake [<a href="#B32-atmosphere-15-01066" class="html-bibr">32</a>]; (<b>C</b>) the high seas precipitation records based on pollen [<a href="#B42-atmosphere-15-01066" class="html-bibr">42</a>]; (<b>D</b>) the age of sand, alluvial soil, and alluvial parent materials within the three profiles.</p>
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<p>Decay curve and growth curve of samples MH-1 (<b>a</b>,<b>b</b>) and TJ-1 (<b>c</b>,<b>d</b>).</p>
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16 pages, 5926 KiB  
Article
Ecological Status Assessment of Permafrost-Affected Soils in the Nadym Region, Yamalo-Nenets Autonomous District, Russian Arctic
by Wenjuan Wang, Timur Nizamutdinov, Aleksander Pechkin, Eugeniya Morgun, Gensheng Li, Xiaodong Wu, Sizhong Yang and Evgeny Abakumov
Land 2024, 13(9), 1406; https://doi.org/10.3390/land13091406 - 1 Sep 2024
Viewed by 271
Abstract
Permafrost-affected regions in the Russian Arctic are a critical study area for studying the sources of metal elements (MEs) in soils originating from geological/pedogenic processes or from anthropogenic sources via atmospheric transport. In the Nadym region of the Yamalo-Nenets Autonomous District, we investigated [...] Read more.
Permafrost-affected regions in the Russian Arctic are a critical study area for studying the sources of metal elements (MEs) in soils originating from geological/pedogenic processes or from anthropogenic sources via atmospheric transport. In the Nadym region of the Yamalo-Nenets Autonomous District, we investigated the contents of soil organic carbon (SOC), total nitrogen (TN), and MEs across different soil types and horizons, explored the source apportionment of MEs, and assessed local ecological risks of potentially toxic elements (PTEs). The results showed that (1) the contents of SOC and TN in Histic Cryosols (8.59% and 0.27%) were significantly higher than in Plaggic Podzols (Arenic, Gelic, and Turbic) (2.28% and 0.15%) and in Ekranic Technosols (Umbric) (1.32% and 0.09%); (2) the concentrations of MEs in the Nadym region were lower than in other Arctic regions; (3) the primary sources of MEs were identified as geological processes (36%), atmospheric transport (23%), agricultural activities (21%), and transportation (20%); and (4) the permafrost-affected soils in the Nadym region exhibited low ecological risks from PTEs. These results underscore the critical role of geological and anthropogenic factors in shaping soil conditions and highlight the relatively low ecological risk from PTEs, providing a valuable benchmark for future environmental assessments and policy development in Yamal permafrost regions. Full article
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<p>The location of the study areas. (<b>a</b>) Global map highlighting the study region. (<b>b</b>) Detailed map of the Nadym region in the Yamalo-Nenets Autonomous District. (<b>c</b>–<b>e</b>) Photographs of the three sampling sites in the Nadym region (TD-tundra, AF-abandoned farmland, and UA-urban area). (<b>f</b>–<b>h</b>) Soil profiles from the sampling sites in the Nadym region.</p>
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<p>Physicochemical properties in permafrost-affected soils of the Nadym region.TD—tundra; AF—abandoned farmland; UA—urban area; (<b>a</b>) SOC—soil organic carbon. (<b>b</b>) TN—soil total nitrogen. (<b>c</b>) C/N—the mass ratio of SOC to TN. (<b>d</b>) pH; (<b>e</b>) Clay (&lt;0.002 mm). (<b>f</b>) Silt (0.002–0.05 mm). (<b>g</b>) Sand (&gt;0.05 mm).</p>
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<p>The concentrations (mg kg<sup>−1</sup>) of metal elements (MEs) in permafrost-affected soils of the Nadym region. TD—tundra; AF—abandoned farmland; UA—urban area. (<b>a</b>–<b>h</b>) The concentrations of eight MEs (Fe, Mn, Zn, As, Cr, Ni, Cu, and Pb) in soil depths and horizons.</p>
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<p>Regression models of metal elements (MEs). TD—tundra; AF—abandoned farmland; UA—urban area. (<b>a</b>) Clay (&lt;0.002 mm). (<b>b</b>) Silt (0.002–0.05 mm). (<b>c</b>) Sand (&gt;0.05 mm). (<b>d</b>,<b>g</b>) SOC—soil organic carbon. (<b>e</b>,<b>h</b>). TN—soil total nitrogen. (<b>f</b>,<b>i</b>) C/N—the mass ratio of SOC to TN. **: significance level of <span class="html-italic">p</span> &lt; 0.01; *: significance level of <span class="html-italic">p</span> &lt; 0.05. The grey shadowed areas represent the 95% confidence interval. Only statistically significant results are shown here.</p>
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<p>Source apportionment of metal elements (MEs) in the Nadym region. (<b>a</b>) The percentage of contribution for each factor by PMF model. (<b>b</b>) Factor profiles of MEs in permafrost-affected soils derived from PMF model. (<b>c</b>) The correlations of MEs by combining Pearson analysis and PMF model, **: significance level of <span class="html-italic">p</span> &lt; 0.01 and *: significance level of <span class="html-italic">p</span> &lt; 0.05.</p>
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<p>Ecological state of potentially toxic elements (PTEs) in permafrost-affected soils of the Nadym region. (<b>a</b>) Geoaccumulation index (I<sub>geo</sub>), Class 0: I<sub>geo</sub> ≤ 0 (no pollution) and Class 1: 0 &lt; I<sub>geo</sub> ≤ 1 (no contamination to slight pollution). (<b>b</b>) Enrichment factor (EF), Class 1: EF &lt; 2 (no enrichment) and Class 2: 2 ≤ EF &lt; 5 (moderate enrichment).</p>
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<p>Potential ecological risk index in permafrost-affected soils of the Nadym region. E<sub>r</sub>—potential ecological risk index of the i-th element. RI—potential ecological risk index for all potentially toxic elements (PTEs), including Ni, As, Cu, Pb, Cr, and Zn.</p>
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16 pages, 5236 KiB  
Article
Effects of Organic Fertilizer and Biochar on Carbon Release and Microbial Communities in Saline–Alkaline Soil
by Pengfei Zhang, Ziwei Jiang, Xiaodong Wu, Nannan Zhang, Jiawei Zhang, Siyuan Zou, Jifu Wang and Shuying Zang
Agronomy 2024, 14(9), 1967; https://doi.org/10.3390/agronomy14091967 - 31 Aug 2024
Viewed by 483
Abstract
Climate change and aridification have increased the risk of salinization and organic carbon loss in dryland soils. Enrichment using biochar and organic fertilizers has the potential to reduce salt toxicity and soil carbon loss. However, the effects of biochar and organic fertilizers on [...] Read more.
Climate change and aridification have increased the risk of salinization and organic carbon loss in dryland soils. Enrichment using biochar and organic fertilizers has the potential to reduce salt toxicity and soil carbon loss. However, the effects of biochar and organic fertilizers on CO2 and CH4 emissions from saline soils in dryland areas, as well as their microbial mechanisms, remain unelucidated. To clarify these issues, we performed a 5-month incubation experiment on typical soda-type saline soil from the western part of the Songnen Plain using five treatments: control treatment (CK), 5% urea (U), straw + 5% urea (SU), straw + 5% urea + microbial agent (SUH), and straw + 5% urea + biochar (SUB). Compared with the SU treatment, the SUH and SUB treatments reduced cumulative CO2 emissions by 14.85% and 35.19%, respectively. The addition of a microbiological agent to the SU treatment reduced the cumulative CH4 emissions by 19.55%, whereas the addition of biochar to the SU treatment increased the cumulative CH4 emissions by 4.12%. These additions also increased the relative abundances of Proteobacteria, Planctomycetes, and Ascomycota. Overall, the addition of biochar and organic fertilizer promoted CO2 emissions and CH4 uptake. This was mainly attributed to an improved soil gas diffusion rate due to the addition of organic materials and enhanced microbial stress due to soil salinity and alkalinity from the release of alkaline substances under closed-culture conditions. Our findings have positive implications for enhancing carbon storage in saline soils in arid regions. Full article
(This article belongs to the Section Agricultural Biosystem and Biological Engineering)
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<p>Cumulative CO<sub>2</sub> emissions (<b>a</b>) and cumulative CH<sub>4</sub> emissions (<b>b</b>) in different treatment groups (n = 3). CK, control treatment; U, urea; SU, straw + urea; SUH, straw + urea + microbial agent; SUB, straw + urea +biochar.</p>
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<p>Relative abundances of bacteria (<b>a</b>) and fungi (<b>c</b>) at the phylum level (&gt;1%) for all treatment groups on day 150. Nonmetric multidimensional scaling (NMDS) analysis of bacteria (<b>b</b>) and fungi (<b>d</b>). Each graph is grouped and connected based on the samples from each treatment group. CK, control treatment; U, urea; SU, straw + urea; SUH, straw + urea + microbial agent; SUB, straw + urea + biochar.</p>
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<p>Normalized heatmap analysis of predicted abundances of carbon degradation and CH₄ oxidation functional enzymes derived from soil bacterial (<b>a</b>) and fungal (<b>b</b>) sequencing data following cultivation experiments. CK, control treatment; U, urea; SU, straw + urea; SUH, straw + urea + microbial agent; SUB, straw + urea + biochar. Enzymes include α-amylase (EC 3.2.1.1), glucoamylase (EC 3.2.1.3), α-glucosidase (EC 3.2.1.20), isoamylase (EC 3.2.1.68), glycogen phosphorylase (EC 2.4.1.1), pullulanase (EC 3.2.1.41), cyclodextrin glycosyltransferase (EC 2.4.1.19), exocellobiohydrolase (EC 3.2.1.91), β-glucosidase (BG; EC 3.2.1.21), cellulase (EC 3.2.1.4), xylanase (EC 3.2.1.8), β-mannosidase (EC 3.2.1.25), α-L-arabinosidase (EC 3.2.1.55), β-xylosidase (EC 3.2.1.37), hemicellulase (EC 3.1.1.73), chitinase (EC 3.2.1.14), chitobiase (EC 3.2.1.132), α-N-acetylglucosaminidase (EC 3.2.1.50), particulate methane monooxygenase (pMMO; EC 1.14.18.3), laccase (LA; EC 1.10.3.2), and α-D-glucuronidase (EC 3.2.1.20).</p>
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<p>Heatmap of Spearman’s correlation analysis between CO<sub>2</sub> emissions (<b>a</b>) and CH₄ emissions (<b>b</b>) with microbial diversity indices and soil physicochemical properties at the phylum-level SAC, soil additives with different characteristics; CCO<sub>2</sub>, cumulative CO<sub>2</sub> emissions; CCH<sub>4</sub>, cumulative CH<sub>4</sub> emissions; CN<sub>2</sub>O, cumulative N<sub>2</sub>O emissions; BOS, bacterial observed species index; FChao1, fungal Chao1 index; FOS, fungal observed species index. * <span class="html-italic">p</span> &lt; 0.05, ** <span class="html-italic">p</span> &lt; 0.01, and *** <span class="html-italic">p</span> &lt; 0.001.</p>
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<p>Structural equation modeling (SEM) based on the effects of SAC, soil physicochemical properties, and fungal alpha diversity index on cumulative CO<sub>2</sub> emissions (<b>a</b>) and cumulative CH<sub>4</sub> emissions (<b>b</b>) in saline–alkaline soil samples. SEM-based standardized total effect on cumulative CO<sub>2</sub> emissions (<b>c</b>) and cumulative CH<sub>4</sub> emissions (<b>d</b>). Blue and red lines indicate significant positive and negative correlations, respectively (<span class="html-italic">p</span> &lt; 0.05), and dashed lines indicate a potential nonsignificant path. Numbers on the arrows indicate standardized path coefficients (* <span class="html-italic">p</span> &lt; 0.05, ** <span class="html-italic">p</span> &lt; 0.01, and *** <span class="html-italic">p</span> &lt; 0.001). Black double arrows indicate the covariance between the exogenous variables. R<sup>2</sup> denotes the total variance of the dependent variables explained by the model. SAC, soil additives with different characteristics; FC, fungal Chao1 index; FOS, observed fungal species index; FP, fungal Pielou evenness index.</p>
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13 pages, 1822 KiB  
Article
Construction of Lentiviral Vectors Carrying Six Pluripotency Genes in Yak to Obtain Yak iPSC Cells
by Ruilin Zeng, Xianpeng Huang, Wei Fu, Wenhui Ji, Wenyi Cai, Meng Xu and Daoliang Lan
Int. J. Mol. Sci. 2024, 25(17), 9431; https://doi.org/10.3390/ijms25179431 - 30 Aug 2024
Viewed by 245
Abstract
Yak is an excellent germplasm resource on the Tibetan Plateau and is able to live in high-altitude areas with hypoxic, cold, and harsh environments. Studies on induced pluripotent stem cells (iPSCs) in large ruminants commonly involve a combination strategy involving six transcription factors, [...] Read more.
Yak is an excellent germplasm resource on the Tibetan Plateau and is able to live in high-altitude areas with hypoxic, cold, and harsh environments. Studies on induced pluripotent stem cells (iPSCs) in large ruminants commonly involve a combination strategy involving six transcription factors, Oct4, Sox2, Klf4, c-Myc, Nanog, and Lin28 (OSKMNL). This strategy tends to utilize genes from the same species to optimize pluripotency maintenance. In this study, we cloned the six pluripotency genes (OSKMNL) from yak and constructed a multi-cistronic lentiviral vector carrying these genes. This vector efficiently delivered the genes into yak fibroblasts, aiming to promote the reprogramming process. We verified that the treated cells had several pluripotency characteristics, marking the first successful construction of a lentiviral system carrying yak pluripotency genes. This achievement lays the foundation for subsequent establishment of yak iPSCs and holds significant implications for yak-breed improvement and germplasm-resource conservation. Full article
(This article belongs to the Section Molecular Genetics and Genomics)
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<p>Construction of lentiviral vectors FUW-tetO-OSM-EGFP and FUW-tetO-KNL-mCherry. (<b>A</b>–<b>F</b>) PCR amplification results of <span class="html-italic">Oct4</span>, <span class="html-italic">Sox2</span>, <span class="html-italic">Klf4</span>, <span class="html-italic">c-Myc</span>, <span class="html-italic">Nanog</span>, and <span class="html-italic">Lin28</span> genes; M represents marker 2000, 1 represents PCR product; (<b>G</b>) Structure of FUW-tetO-OSM-EGFP lentiviral vector; (<b>H</b>) Structure of FUW-tetO-KNL-mCherry lentiviral vector; (<b>I</b>) Electrophoresis of total RNA from yak gonadal ridge; (<b>J</b>) PCR amplification results of lentiviral vectors; M represents marker 2000, 1–5 represent FUW-tetO-OSM-EGFP plasmid PCR products (4317 bp), 6–10 represent FUW-tetO-KNL-mCherry plasmid PCR products (3897 bp); (<b>K</b>–<b>P</b>) PCR amplification results of <span class="html-italic">Oct4</span>, <span class="html-italic">Sox2</span>, <span class="html-italic">Klf4</span>, <span class="html-italic">c-Myc</span>, <span class="html-italic">Nanog</span>, and <span class="html-italic">Lin28</span> genes from plasmid; M represents marker 2000, 1–4 represent plasmid PCR products; (<b>Q</b>–<b>V</b>) Sequence information of <span class="html-italic">Oct4</span>, <span class="html-italic">Sox2</span>, <span class="html-italic">Klf4</span>, <span class="html-italic">c-Myc</span>, <span class="html-italic">Nanog</span>, and <span class="html-italic">Lin28</span> genes of yak.</p>
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<p>Lentiviral transduction of 293T cells and immunofluorescence identification of fibroblasts. (<b>A</b>) Packaging results of FUW-tetO-OSM-EGFP lentiviral vector; (<b>B</b>) Packaging results of FUW-tetO-KNL-mCherry lentiviral vector; (<b>C</b>,<b>D</b>) Expression of fluorescent proteins in 293T cells after lentiviral transduction; (<b>C</b>) is the experimental group, (<b>D</b>) is the control group; (<b>E</b>) Immunofluorescence identification of yak fibroblasts; (<b>F</b>) Immunofluorescence identification of mouse fibroblasts, with red fluorescence indicating vimentin.</p>
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<p>Reprogramming of yak fibroblasts and preliminary pluripotency identification. (<b>A</b>) Reprogramming steps and morphological changes of yak fibroblasts; (<b>B</b>,<b>C</b>) Expression of fluorescent proteins in yak fibroblasts after lentiviral transduction; (<b>B</b>) is the experimental group, (<b>C</b>) is the control group; (<b>D</b>–<b>G</b>) AP staining of yak iPSCs; (<b>D</b>) shows the clone morphology on a six-well plate before staining, (<b>E</b>) shows the clone morphology on a six-well plate after staining, (<b>F</b>) shows AP-stained clones, (<b>G</b>) shows the number of positive clones in three replicate wells; (<b>H</b>) PCR for the methylation-status detection of the <span class="html-italic">Oct4</span> promoter region; (<b>I</b>) RT-PCR detection of pluripotency-related genes in yak iPSCs, with gonadal ridge as the positive control and BEF as the negative control; (<b>J</b>) RT-PCR detection of related genes in fibroblasts after lentiviral transduction; M is marker 2000. Experimental group: 1 for <span class="html-italic">Oct4</span> (242 bp), 3 for <span class="html-italic">Sox2</span> (215 bp), 5 for <span class="html-italic">c-Myc</span> (221 bp), 7 for <span class="html-italic">Klf4</span> (354 bp), 9 for <span class="html-italic">Nanog</span> (309 bp), 11 for <span class="html-italic">Lin28</span> (204 bp); control group: 2 for <span class="html-italic">Oct4</span>, 4 for <span class="html-italic">Sox2</span>, 6 for <span class="html-italic">c-Myc</span>, 8 for <span class="html-italic">Klf4</span>, 10 for <span class="html-italic">Nanog</span>, 12 for <span class="html-italic">Lin28</span>; (<b>K</b>) Methylation status of the <span class="html-italic">Oct4</span> promoter region in yak fibroblasts; (<b>L</b>) Methylation status of the <span class="html-italic">Oct4</span> promoter region in yak iPSCs.</p>
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17 pages, 10099 KiB  
Article
Leaf Functional Traits and Their Influencing Factors in Six Typical Vegetation Communities
by Yuting Xing, Shiqin Deng, Yuanyin Bai, Zhengjie Wu and Jian Luo
Plants 2024, 13(17), 2423; https://doi.org/10.3390/plants13172423 - 30 Aug 2024
Viewed by 245
Abstract
Leaf functional traits (LFTs) have become a popular topic in ecological research in recent years. Here, we measured eight LFTs, namely leaf area (LA), specific leaf area (SLA), leaf thickness (LT), leaf dry matter content (LDMC), leaf carbon content (LCC), leaf nitrogen content [...] Read more.
Leaf functional traits (LFTs) have become a popular topic in ecological research in recent years. Here, we measured eight LFTs, namely leaf area (LA), specific leaf area (SLA), leaf thickness (LT), leaf dry matter content (LDMC), leaf carbon content (LCC), leaf nitrogen content (LNC), leaf phosphorus content (LPC), and leaf potassium content (LKC), in six typical vegetation communities (sclerophyllous evergreen broad-leaved forests, temperate evergreen coniferous forests, cold-temperate evergreen coniferous forests, alpine deciduous broad-leaved shrubs, alpine meadows, and alpine scree sparse vegetation) in the Chayu River Basin, southeastern Qinghai-Tibet Plateau. Our aim was to explore their relationships with evolutionary history and environmental factors by combining the RLQ and the fourth-corner method, and the method of testing phylogenetic signal. The results showed that (i) there were significant differences in the eight LFTs among the six vegetation communities; (ii) the K values of the eight LFTs were less than 1; and (iii) except for LCC, all other LFTs were more sensitive to environmental changes. Among these traits, LA was the most affected by the environmental factors, followed by LNC. It showed that the LFTs in the study were minimally influenced by phylogenetic development but significantly by environmental changes. This study further verified the ecological adaptability of plants to changes in environmental factors and provides a scientific basis for predicting the distribution and diffusion direction of plants under global change conditions. Full article
(This article belongs to the Section Plant Ecology)
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<p>Differences in leaf functional traits among plant communities. Leaf functional traits (LFTs): (<b>a</b>) leaf area (LA), (<b>b</b>) specific leaf area (SLA), (<b>c</b>) leaf thickness (LT), (<b>d</b>) leaf dry matter content (LDMC), (<b>e</b>) leaf carbon content (LCC), (<b>f</b>) leaf nitrogen content (LNC), (<b>g</b>) leaf phosphorus content (LPC), and (<b>h</b>) leaf potassium content (LKC). Community types: sclerophyllous evergreen broad-leaved forests (A), temperate evergreen coniferous forests (B), cold-temperate evergreen coniferous forests (C), alpine deciduous broad-leaved shrubs (D), alpine meadows (E), and alpine scree sparse vegetation (F). Significant differences in post hoc Dunn tests are represented by different letters above the boxplots.</p>
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<p>Phylogenetic tree of typical vegetation communities in the Chayu River Basin.</p>
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<p>Phylogenetic correlation of species in typical vegetation communities in the Chayu River Basin. Species names are colored according to community types, blue: sclerophyllous evergreen broad-leaved forests; green: temperate evergreen coniferous forests; purple: cold-temperate evergreen coniferous forests; red: alpine deciduous broad-leaved shrubs; yellow: alpine meadows; pink: alpine scree sparse vegetation. Black bar: no positive autocorrelation; red bar: positive autocorrelation.</p>
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<p>RLQ analysis of the Chayu River Basin. Study sites and species names are colored according to community types, red: sclerophyllous evergreen broad-leaved forests; orange: temperate evergreen coniferous forests; yellow: cold-temperate evergreen coniferous forests; green: alpine deciduous broad-leaved shrubs; light blue: alpine meadows; blue: alpine scree sparse vegetation.</p>
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<p>Fourth-corner analysis diagram. Red squares indicate positive relationships, blue squares indicate negative relationships, and gray squares indicate nonsignificant.</p>
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<p>Study area and sample distribution map. Community types: sclerophyllous evergreen broad-leaved forests (<b>I</b>), temperate evergreen coniferous forests (<b>II</b>), cold-temperate evergreen coniferous forests (<b>III</b>), alpine deciduous broad-leaved shrubs (<b>IV</b>), alpine meadows (<b>V</b>), and alpine scree sparse vegetation (<b>VI</b>).</p>
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20 pages, 12963 KiB  
Article
Multi-Scenario Ecological Network Conservation Planning Based on Climate and Land Changes: A Multi-Species Study in the Southeast Qinghai–Tibet Plateau
by Chuang Li, Kai Su, Sufang Yu and Xuebing Jiang
Forests 2024, 15(9), 1506; https://doi.org/10.3390/f15091506 - 28 Aug 2024
Viewed by 320
Abstract
The Qinghai–Tibet Plateau ecosystem is fragile, experiencing rapid changes in land cover driven by both climate change and human activities, leading to habitat fragmentation and loss and resulting in biodiversity decline. Habitat ecological networks (HA-ENs) are considered effective solutions for habitat connectivity and [...] Read more.
The Qinghai–Tibet Plateau ecosystem is fragile, experiencing rapid changes in land cover driven by both climate change and human activities, leading to habitat fragmentation and loss and resulting in biodiversity decline. Habitat ecological networks (HA-ENs) are considered effective solutions for habitat connectivity and biodiversity conservation in response to these dual drivers. However, HA-EN studies typically rely on current or historical landscape data, which hinders the formulation of future conservation strategies. This study proposes three future scenarios—improvement, deterioration, and baseline scenarios—focused on the southeastern Qinghai–Tibet Plateau (SE-QPT). The habitats of 10 species across three classes are extracted, integrating land use and climate change data into habitat ecological network modeling to assess the long-term dynamics of HA-ENs in the SE-QPT. Finally, conservation management strategies are proposed based on regional heterogeneity. The results show the following: Climate change and human activities are expected to reduce the suitable habitat area for species, intensifying resource competition among multiple species. By 2030, under all scenarios, the forest structure will become more fragmented, and grassland degradation will be primarily concentrated in the southeastern and western parts of the study area. Compared to 1985 (71,891.3 km2), the habitat area by 2030 is projected to decrease by 12.9% (62,629.3 km2). The overlap rate of species habitats increases from 25.4% in 1985 to 30.9% by 2030. Compared to the HA-EN control in 1985, all scenarios show a decrease in connectivity and complexity, with only the improvement scenario showing some signs of recovery towards the control network, albeit limited. Finally, based on regional heterogeneity, a conservation management strategy of “two points, two cores, two corridors, and two regions” is proposed. This strategy aims to provide a framework for future conservation efforts in response to climate change and human activities. Full article
(This article belongs to the Section Forest Ecology and Management)
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<p>Elevation and land use/land cover (LULC) of the study area.</p>
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<p>Research framework. The research framework of this study is divided into three parts from top to bottom, including multi-scenario simulation of future LULC, construction of the ecological network, and analysis of the ecological network.</p>
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<p>Spatial pattern change in LULC: (<b>a</b>) 1985 control network; (<b>b</b>) 2030 improvement network; (<b>c</b>) 2030 deterioration network; (<b>d</b>) 2030 baseline network and change transfer matrix of LULC; (<b>e</b>) 2030 improvement network; (<b>f</b>) 2030 deterioration network; (<b>g</b>) 2030 baseline network. (I) the intersection of high mountains and canyons, (II) dense forests, (III) urban neighborhoods, and (IV) grassland.</p>
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<p>Spatial pattern of resistance surfaces in multi-scenario ecological networks: (<b>a</b>) 1985 control network; (<b>b</b>) 2030 improvement network; (<b>c</b>) 2030 deterioration network; (<b>d</b>) 2030 baseline network. The letters in the figure represent four typical regions, (I) the intersection of high mountains and canyons, (II) dense forests, (III) urban neighborhoods, and (IV) grassland.</p>
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<p>The spatial distribution of networks. Each color represents a different species, patches represent ecological sources, and lines represent ecological corridors. (<b>a</b>) The 1985 control network; (<b>b</b>) 2030 improvement network; (<b>c</b>) 2030 deterioration network; (<b>d</b>) 2030 baseline network. The letters in the figure represent four typical regions, (I) the intersection of high mountains and canyons, (II) dense forests, (III) urban neighborhoods, and (IV) grassland.</p>
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<p>Network topology for multi-scenario ecological networks.</p>
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<p>A schematic diagram of the module division of the multi-species ecological network in the study area. Ecological sources with similar structure and close connection will form a module. The rectangle of each color represents a module, the lines in the rectangle represent different ecological sources, and the serial number of the source is marked at the bottom of the line. (<b>a</b>) The 1985 control network; (<b>b</b>) 2030 improvement network; (<b>c</b>) 2030 deterioration network; (<b>d</b>) 2030 baseline network.</p>
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<p>Conservation patterns in the study area: (<b>a</b>) habitat for migratory birds; (<b>b</b>) grassland degradation and restoration areas; (<b>c</b>) rivers and canyons; (<b>d</b>) forest sea; (<b>e</b>) animals in captivity; (<b>f</b>) melting glaciers; (<b>g</b>) rocky desertification; (<b>h</b>) urban green space; (<b>i</b>) human-made development; (<b>j</b>) overgrazing. (Shot by Chuang Li).</p>
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20 pages, 5048 KiB  
Article
Transcriptome-Based Screening of Candidate Low-Temperature-Associated Genes and Analysis of the BocARR-B Transcription Factor Gene Family in Kohlrabi (Brassica oleracea L. var. caulorapa L.)
by Shuanling Bian, Dengkui Shao, Qingsheng Zhao, Quanhui Li and Yanjing Ren
Int. J. Mol. Sci. 2024, 25(17), 9261; https://doi.org/10.3390/ijms25179261 - 27 Aug 2024
Viewed by 332
Abstract
Low temperature is a significant abiotic stress factor that not only impacts plant growth, development, yield, and quality but also constrains the geographical distribution of numerous wild plants. Kohlrabi (Brassica oleracea L. var. caulorapa L.) belongs to the Brassicaceae family and has [...] Read more.
Low temperature is a significant abiotic stress factor that not only impacts plant growth, development, yield, and quality but also constrains the geographical distribution of numerous wild plants. Kohlrabi (Brassica oleracea L. var. caulorapa L.) belongs to the Brassicaceae family and has a short growing period. In this study, a total of 196,642 unigenes were obtained from kohlrabi seedlings at low temperatures; of these, 52,836 unigenes were identified as differentially expressed genes. Transcription factor family members ARR-B, C3H, B3-ARF, etc. that had a high correlation with biochemical indicators related to low temperature were identified. A total of nineteen BocARR-B genes (named BocARR-B1BocARR-B19) were obtained, and these genes were distributed unevenly across seven chromosomes. Nineteen BocARR-B genes searched four conserved motifs and were divided into three groups. The relative expression level analysis of 19 BocARR-B genes of kohlrabi showed obvious specificity in different tissues. This study lays a foundation and provides new insight to explain the low-temperature resistance mechanism and response pathways of kohlrabi. It also provides a theoretical basis for the functional analysis of 19 BocARR-B transcription factor gene family members. Full article
(This article belongs to the Special Issue Advance in Plant Abiotic Stress)
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<p>Biochemical indicators of kohlrabi seedlings at low temperature (CK) and under low-temperature stress at 12 °C, 8 °C, and 4 °C. (<b>A</b>) Fresh and dry weight. (<b>B</b>) Water content. (<b>C</b>) Catalase (CAT) activity. (<b>D</b>) Superoxide dismutase (SOD) activity. (<b>E</b>) Malondialdehyde (MDA) content. (<b>F</b>) Proline (Pro) content. (<b>G</b>) Soluble protein content. (<b>H</b>) Soluble sugar content. ** Represents a significant difference when the <span class="html-italic">p</span>-value is 0.01.</p>
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<p>Transcriptome data summary and analysis of differentially expressed unigenes in kohlrabi seedlings under low-temperature stress. (<b>A</b>) The transcript and unigene sequences’ length distribution. (<b>B</b>) Functional annotation of assembled unigenes. (<b>C</b>) Differentially expressed unigenes in different pairwise comparisons. (<b>D</b>) Venn diagram of differentially expressed unigene numbers in pairwise comparisons between control and treatment of 12 °C vs. CK, 8 °C vs. CK, and 4 °C vs. CK. White and red digits indicate the number of downregulated and upregulated genes, respectively. (<b>E</b>) Venn diagram of differentially expressed unigene numbers in pairwise comparisons of treatment of 12 °C vs. CK, 8 °C vs. 12 °C, and 4 °C vs. 8 °C. White and red digits indicate the number of downregulated and upregulated genes, respectively.</p>
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<p>Availability analysis of transcriptome data using RNA-Seq and RT-qPCR was used to construct the expression-level bar graphs at 4 °C, 8 °C, 12 °C, and CK (22 °C). (<b>A</b>) <span class="html-italic">BnaC05g00840D</span> (Cluster-17807.81882); (<b>B</b>) <span class="html-italic">SYD</span> (Cluster-17807.82832); (<b>C</b>) <span class="html-italic">Zinc finger protein CONSTANS-LIKE 4</span> (Cluster-17807.77797); (<b>D</b>) <span class="html-italic">MYB1-R1</span> (Cluster-17807.81941); (<b>E</b>) <span class="html-italic">C3H49</span> (Cluster-17807.85268); (<b>F</b>) <span class="html-italic">C3H30</span> (Cluster-17807.81598); (<b>G</b>) <span class="html-italic">Zinc finger protein CONSTANS-LIKE 4</span> (Cluster-17807.83850); (<b>H</b>) <span class="html-italic">RGA2</span> (Cluster-17807.82153); (<b>I</b>) <span class="html-italic">DOF3.3</span> (Cluster-17807.86516); (<b>J</b>) <span class="html-italic">B-box zinc finger protein 25</span> (Cluster-17807.84461).</p>
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<p>A putative interplay of kohlrabi seedlings under low-temperature stress. The DEG changes were represented by the log<sub>2</sub>FPKM. Blue and red, respectively, represent a decrease and an increase in the expression level of genes.</p>
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<p>Analysis of differentially expressed transcription factors and identification of low-temperature-related differentially expressed transcription factors. (<b>A</b>) Venn diagram of differentially expressed transcription factors in the comparison of 12 °C vs. CK, 8 °C vs. CK, and 4 °C vs. CK. White and red digits indicate the number of downregulated and upregulated genes, respectively. (<b>B</b>) Venn diagram of the differentially expressed transcription factor in the comparison of 12 vs. CK, 8 °C vs. 12 °C, and 4 °C vs. 8 °C. White and red digits indicate the number of downregulated and upregulated genes, respectively. (<b>C</b>) Co-expression network map between differentially expressed transcription factors and CAT activity, SOD activity, MDA content, Pro content, and soluble sugar content. Yellow squares indicate biochemical indicators related to the low temperature. Blue circles indicate differentially expressed transcription factors. (<b>D</b>) Expression profile of differentially expressed transcription factors’ related low-temperature stress in kohlrabi using RNA sequencing. The changes in the differentially expressed transcription factors are represented by the log<sub>2</sub>FPKM.</p>
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<p>Co-expression network map between differentially expressed transcription factors related to the low temperature and DEGs related to the metabolites pathway. Blue circles indicate DEGs related to the metabolites pathway; yellow squares indicate differentially expressed transcription factors related to the low temperature.</p>
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<p>Chromosomal locations of <span class="html-italic">BocARR-B</span> genes in kohlrabi. Note: C1–C9 indicates nine chromosomes. The scale bar on the left shows the chromosome lengths (Mb). The blue and yellow regions of the chromosome represent a low and high gene density, respectively.</p>
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<p>Evolutionary relationships, conserved protein motifs, and domains of the 19 <span class="html-italic">BocARR-Bs</span>. (<b>A</b>) Phylogenetic relationship analysis using amino acid sequences of <span class="html-italic">BocARR-Bs</span> by MEGA11. The size of the purple circle represents the bootstrap value. The display range indicates the branch metadata bootstrap. (<b>B</b>) Distribution of 4 motifs. (<b>C</b>) Distribution of REC_type_ARR-like domain, myb_SHAQKYF domain, PLN03162 superfamily domain, and HFD_SF superfamily domain. (<b>D</b>) Four different conserved motifs of <span class="html-italic">BocARR-Bs</span>.</p>
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<p>Evolutionary tree of <span class="html-italic">BocARR-B</span> family genes in kohlrabi and Arabidopsis.</p>
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<p>Expression analysis of <span class="html-italic">BocARR-B</span> family genes in kohlrabi. (<b>A</b>) Expression profile of <span class="html-italic">BocARR-B</span> genes in kohlrabi using RNA sequencing during low-temperature stress. Data in the heatmap box are normalized expression levels of three replicates. (<b>B</b>–<b>L</b>) RT-qPCR analysis of eleven <span class="html-italic">BocARR-B</span> transcription factor genes in different tissues of kohlrabi. * Represents a significant difference when the <span class="html-italic">p</span>-value is 0.05. ** Represents a significant difference when the <span class="html-italic">p</span>-value is 0.01.</p>
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19 pages, 27849 KiB  
Article
Combined Multi-Omics Analysis Reveals the Potential Role of ACADS in Yak Intramuscular Fat Deposition
by Fang Xu, Haibo Wang, Chunyu Qin, Binglin Yue, Youzhualamu Yang, Jikun Wang, Jincheng Zhong and Hui Wang
Int. J. Mol. Sci. 2024, 25(16), 9131; https://doi.org/10.3390/ijms25169131 - 22 Aug 2024
Viewed by 387
Abstract
The Yak (Bos grunniens) is a special breed of livestock predominantly distributed in the Qinghai–Tibet Plateau of China. Intramuscular fat (IMF) content in beef cattle is a vital indicator of meat quality. In this study, RNA-Seq and Protein-Seq were respectively employed [...] Read more.
The Yak (Bos grunniens) is a special breed of livestock predominantly distributed in the Qinghai–Tibet Plateau of China. Intramuscular fat (IMF) content in beef cattle is a vital indicator of meat quality. In this study, RNA-Seq and Protein-Seq were respectively employed to sequence the transcriptome and proteome of the longissimus dorsi (LD) tissue from 4-year-old yaks with significant differences in IMF content under the same fattening conditions. Five overlapping genes (MYL3, ACADS, L2HGDH, IGFN1, and ENSBGRG00000000-926) were screened using combined analysis. Functional verification tests demonstrated that the key gene ACADS inhibited yak intramuscular preadipocyte (YIMA) differentiation and proliferation, promoted mitochondrial biogenesis gene expression, and increased the mitochondrial membrane potential (MMP). Furthermore, co-transfection experiments further demonstrated that interfering with ACADS reversed the effect of PPARα agonists in promoting lipid differentiation. In conclusion, ACADS potentially inhibits lipid deposition in YIAMs by regulating the PPARα signalling pathway. These findings offer insights into the molecular mechanisms underlying yak meat quality. Full article
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<p>Overview of transcriptome data. (<b>A</b>) Principal component analysis (PCA). (<b>B</b>) Volcano plot of DEGs. (<b>C</b>) Heatmap of the hierarchical cluster analysis of all samples and DEGs. (<b>D</b>) Gene Ontology (GO) terms with significant enrichment of DEGs. (<b>E</b>) Circle map of the top 20 enriched KEGG pathways for DEGs. (<b>F</b>) RNA-Seq data verified by RT-qPCR.</p>
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<p>Overview of proteome data. (<b>A</b>) PCA for H-IMF and L-IMF. (<b>B</b>) Volcano plot for the distribution of DEPs. (<b>C</b>) Heatmap of the hierarchical cluster analysis of all sequencing samples and DEPs. (<b>D</b>) GO terms with significant enrichment of DEPs. (<b>E</b>) Circle map of the top 20 enriched KEGG pathways for DEPs. (<b>F</b>) Functional clustering of DEPs by STRING 12.0.</p>
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<p>Combined analysis of transcriptome and proteome data. (<b>A</b>) Venn diagram of all genes, all proteins, DEGs and DEPs. (<b>B</b>) Nine-quadrant diagram of DEGs and DEPs. (<b>C</b>) Top 30 enriched GO terms for both transcriptome and proteome data. (<b>D</b>) Significantly enriched KEGG pathways for both transcriptomics and proteomics data.</p>
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<p>Analysis of the <span class="html-italic">ACADS</span> sequence and tissue expression profile. (<b>A</b>) Tissue expression pattern of <span class="html-italic">ACADS</span> in Maiwa yaks (n = 9), the same lowercase letter indicates that the difference is not significant (<span class="html-italic">p</span> &gt; 0.05), and the different lowercase letters indicate significant differences (<span class="html-italic">p</span> &lt; 0.05). (<b>B</b>) Expression levels of <span class="html-italic">ACADS</span> and <span class="html-italic">PPARγ</span> in YIMAs (n = 9). (<b>C</b>) Phylogenetic tree of <span class="html-italic">ACADS</span> protein sequence. (<b>D</b>) Protein interaction network of <span class="html-italic">ACADS</span>. (<b>E</b>) Construction of the lipid deposition model of YIMAs. Data are presented as the mean ± SEM.</p>
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<p><span class="html-italic">ACADS</span> inhibits YIMA lipid accumulation. (<b>A</b>) Identification of siRNA interference efficiency and concentration screening of <span class="html-italic">ACADS</span> (n = 9). (<b>B</b>) Identification of efficiency and concentration screening of <span class="html-italic">ACADS</span> overexpression (n = 9). (<b>C</b>,<b>D</b>) Expression of lipid differentiation marker genes at five time points after <span class="html-italic">ACADS</span> interference or overexpression (n = 9). (<b>E</b>,<b>F</b>) BODIPY staining at five-time points after <span class="html-italic">ACADS</span> interference or overexpression. (<b>G</b>,<b>H</b>) Oil red O staining at five time points after <span class="html-italic">ACADS</span> interference or overexpression. * <span class="html-italic">p</span> &lt; 0.05, ** <span class="html-italic">p</span> &lt; 0.01, *** <span class="html-italic">p</span> &lt; 0.001, ns <span class="html-italic">p</span> &gt; 0.05. Data are presented as the mean ± SEM.</p>
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<p><span class="html-italic">ACADS</span> inhibited YIMA proliferation. (<b>A</b>,<b>B</b>) Expression of proliferation marker genes after interference or overexpression of <span class="html-italic">ACADS</span> (n = 9). (<b>C</b>,<b>D</b>) The OD value of CCK-8 at four time points after interference or overexpression of <span class="html-italic">ACADS</span> (n = 6). (<b>E</b>,<b>F</b>) EdU staining after interference or overexpression of <span class="html-italic">ACADS</span>. (<b>G</b>,<b>H</b>) Scratch test at four time points after interference or overexpression of <span class="html-italic">ACADS</span>. (<b>I</b>,<b>J</b>) Flow cytometry after interference or overexpression of <span class="html-italic">ACADS</span>. * <span class="html-italic">p</span> &lt; 0.05, ** <span class="html-italic">p</span> &lt; 0.01, ns <span class="html-italic">p</span> &gt; 0.05. Data are presented as the mean ± SEM.</p>
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<p><span class="html-italic">ACADS</span> promotes mitochondrial biogenesis and the mitochondrial membrane potential (MMP). (<b>A</b>,<b>B</b>) Expression of mitochondrial marker genes after interference or overexpression of <span class="html-italic">ACADS</span> (n = 9). (<b>C</b>,<b>D</b>) Rh-123 staining after interference or overexpression of <span class="html-italic">ACADS</span>. * <span class="html-italic">p</span> &lt; 0.05, ** <span class="html-italic">p</span> &lt; 0.01, ns <span class="html-italic">p</span> &gt; 0.05. Data are presented as the mean ± SEM.</p>
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<p><span class="html-italic">ACADS</span> inhibits intramuscular fat (IMF) deposition by regulating the PPARα signalling pathway. (<b>A</b>,<b>B</b>) Expression of key genes in the PPARα signalling pathway after the interference or overexpression of <span class="html-italic">ACADS</span> (n = 9). (<b>C</b>) PPARα activator Wy-14643 concentration screening (n = 9). (<b>D</b>) Expression of key genes in the PPARα pathway and lipid differentiation marker genes in different treatment control groups (NC, siRNA, Wy-14643, siRNA+Wy-14643), “+” means to add, “−” means not to add, the same lowercase letter indicates that the difference is not significant (<span class="html-italic">p &gt;</span> 0.05), the different lowercase letters indicate significant differences (<span class="html-italic">p &lt;</span> 0.05). (<b>E</b>) Oil red O staining under different treatment control groups. (<b>F</b>) BODIPY staining under different treatment control groups. * <span class="html-italic">p</span> &lt; 0.05, ** <span class="html-italic">p</span> &lt; 0.01, ns <span class="html-italic">p</span> &gt; 0.05. Data are presented as the mean ± SEM.</p>
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19 pages, 5543 KiB  
Article
Characterization and Differentiation of Flavor Profile of 12 Air-Dried Yak Meat Products Using GC–IMS and Multivariate Analysis
by Qiuyu Wang, Rongsheng Du, Yuqi Wang, Shulin Zhang, Linlin Wang and Lina Wang
Foods 2024, 13(16), 2626; https://doi.org/10.3390/foods13162626 - 21 Aug 2024
Viewed by 479
Abstract
Volatile organic compounds (VOCs) in food are key factors constituting their unique flavor, while the characteristics of VOCs in air-dried yak meat (AYM) from various regions of the Tibetan Plateau and their inter-regional differences remain unclear. Therefore, this study conducted a comprehensive analysis [...] Read more.
Volatile organic compounds (VOCs) in food are key factors constituting their unique flavor, while the characteristics of VOCs in air-dried yak meat (AYM) from various regions of the Tibetan Plateau and their inter-regional differences remain unclear. Therefore, this study conducted a comprehensive analysis of VOCs in the five-spice (FS), spicy and numbing (SN), and aromatic and spicy (AS) versions of AYM from four regions of the Tibetan Plateau (Gansu, Qinghai, Sichuan, and Tibet) using gas chromatography–ion mobility spectrometry (GC–IMS) A total of 58 VOCs were identified, with alcohols accounting for 28.40%, ketones 22.89%, aldehydes 18.85%, and terpenes 17.61%. Topographic plots, fingerprint profiles, and multivariate analysis not only distinguished AYM of the same flavor from different regions but also discriminated those of different flavors within the same region. Furthermore, 17 key VOCs were selected as the primary aroma characteristics of the 12 types of AYM, including linalool, 3-methylbutanal, acetone, and limonene. Meanwhile, the differential VOCs for each flavor were determined, with linalyl acetate being unique to the FS, (E)-ocimene and ethyl propanoate being specific to the SN, and 2-methyl-3-(methylthio)furan-D and Hexanal-D being characteristic of the AS flavor. Based on the above results, the flavor of AYM can be improved to suit the taste of most people and increase its consumption. Full article
(This article belongs to the Section Food Analytical Methods)
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<p>3D topography of air-dried yak meat with different flavors from four regions ((<b>A</b>–<b>D</b>) are Gansu, Qinghai, Tibet, and Sichuan regions, respectively).</p>
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<p>Two-dimensional spectrograms of air-dried yak meat with different flavors from four regions ((<b>A</b>–<b>D</b>) are Gansu, Qinghai, Tibet, and Sichuan regions, respectively).</p>
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<p>Relative content of volatile components in air-dried yak meat.</p>
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<p>Relative content of volatile components in air-dried yak meat ((<b>A</b>–<b>D</b>) are Gansu, Qinghai, Tibet, and Sichuan regions, respectively).</p>
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<p>PCA of flavor compounds of air-dried yak meat with different flavors from four regions ((<b>A</b>–<b>D</b>) are Gansu, Qinghai, Tibet, and Sichuan regions, respectively).</p>
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<p>Euclidean distance plots of flavor compounds of air-dried yak meat with different flavors from four regions ((<b>A</b>–<b>D</b>) are Gansu, Qinghai, Tibet, and Sichuan regions, respectively).</p>
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<p>(<b>A</b>) Scatter plot of PCA of 12 air-dried yak meat samples. (<b>B</b>) Plot of volatile components scores of 12 air-dried yak meat samples categorized by Gansu (G), Qinghai (Q), Sichuan (S), and Tibet (X). (<b>C</b>) Substitution test plot of 12 air-dried yak meats.</p>
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<p>Screening of differential volatile components in 12 air-dried yak meat samples ((<b>A</b>) VOCs with VIP values &gt; 1; (<b>B</b>) PCA scoring plot; (<b>C</b>) clustered thermogram).</p>
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<p>(<b>A</b>) PCA scatter plot of air-dried yak meat with FS flavoring. (<b>B</b>) Volatile component score plot of four air-dried yak meat samples with FS flavoring classified according to Gansu (G), Qinghai (Q), Sichuan (S), and Tibet (X). (<b>C</b>) Substitution test plot of air-dried yak meat with FS flavoring. (<b>D</b>) VOCs in air-dried yak meat with FS flavoring with VIP value greater than 1.</p>
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<p>(<b>A</b>) PCA scatter plot of air-dried yak meat with SN flavoring. (<b>B</b>) Volatile component score plot of four air-dried yak meat samples with SN flavoring classified according to Gansu (G), Qinghai (Q), Sichuan (S), and Tibet (X). (<b>C</b>) Substitution test plot of air-dried yak meat with SN flavoring. (<b>D</b>) VOCs in air-dried yak meat with SN flavoring with VIP value greater than 1.</p>
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<p>(<b>A</b>) PCA scatter plot of air-dried yak meat with AS flavoring. (<b>B</b>) Volatile component score plot of four air-dried yak meat samples with AS flavoring classified according to Gansu (G), Qinghai (Q), Sichuan (S), and Tibet (X). (<b>C</b>) Substitution test plot of air-dried yak meat with AS flavoring. (<b>D</b>) VOCs in air-dried yak meat with AS flavoring with VIP value greater than 1.</p>
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19 pages, 15166 KiB  
Article
Ensemble Predictions of Rainfall-Induced Landslide Risk under Climate Change in China Integrating Antecedent Soil-Wetness Factors
by Han Zong, Qiang Dai and Jingxuan Zhu
Atmosphere 2024, 15(8), 1013; https://doi.org/10.3390/atmos15081013 - 21 Aug 2024
Viewed by 307
Abstract
Global warming has increased the occurrence of extreme weather events, causing significant economic losses and casualties from rainfall-induced landslides. China, being highly prone to landslides, requires comprehensive predictions of future rainfall-induced landslide risks. By developing a landslide-prediction model integrated with the CMIP6 GCMs [...] Read more.
Global warming has increased the occurrence of extreme weather events, causing significant economic losses and casualties from rainfall-induced landslides. China, being highly prone to landslides, requires comprehensive predictions of future rainfall-induced landslide risks. By developing a landslide-prediction model integrated with the CMIP6 GCMs ensemble, we predict the spatiotemporal distribution of future rainfall-induced landslides in China, incorporating antecedent soil-wetness factors. In this study, antecedent soil wetness is represented by the antecedent effective rainfall index (ARI), which accounts for cumulative rainfall, evaporation, and runoff losses. Firstly, we calculated landslide susceptibility using seven geographic factors, such as slope and geology. Then, we constructed landslide threshold models with two antecedent soil-wetness indicators. Compared to the traditional recent cumulative rainfall thresholds, the landslide threshold model based on ARI demonstrated higher hit rates and lower false alarm rates. Ensemble predictions indicate that in the early 21st century, the risk of landslides decreases in the Qinghai–Tibet Plateau, Southwest, and Southeast regions but increases in other regions. Mid-century projections show a 10% to 40% increase in landslide risk across most regions. By the end of the century, the risk is expected to rise by more than 15% nationwide, displaying a spatial distribution pattern that intensifies from east to west. Full article
(This article belongs to the Special Issue Advances in Rainfall-Induced Hazard Research)
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<p>The decision-making process of the LHASA model.</p>
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<p>Calibration of parameters with Euclidean distances for different <span class="html-italic">w</span> and <span class="html-italic">t</span> values.</p>
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<p>Map of rainfall-induced landslide sensitivity levels in China.</p>
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<p>Thresholds of MODEL 1 and MODEL 2 under different climate models (red dots represent average values), (<b>a</b>) The thresholds of MODEL 1 under the QDM correction algorithm; (<b>b</b>) The thresholds of MODEL 1 under the MBCn correction algorithm; (<b>c</b>) The thresholds of MODEL 2 under the QDM correction algorithm; (<b>d</b>) The thresholds of MODEL 2 under the MBCn correction algorithm.</p>
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<p>Spatial distribution of MODEL 1 and MODEL 2 thresholds, (<b>a</b>) MODEL 1; (<b>b</b>) MODEL 2.</p>
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<p>Spatial distribution of relative changes in rainfall-induced landslides in China under different bias-correction methods.</p>
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<p>Spatial distribution of relative changes in rainfall-induced landslides in China under different SSP scenarios.</p>
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<p>Spatial distribution of relative changes in rainfall-induced landslides in China from 2041 to 2070 under different climate models in the SSP2-4.5 scenario.</p>
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<p>Relative changes in landslide risk under different SSPs across various climate models (red dots represent average values), (<b>a</b>) GCMs include ACCESS-CM2, ACCESS-ESM1-5, CESM2-WACCM, EC-Earth3-Veg, and FGOALS-g3; (<b>b</b>) GCMs include GFDL-CM4, GFDL-ESM4, INM-CM4-8, INM-CM5-0, and IPSL-CM6A-LR; (<b>c</b>) GCMs include MIROC6, MPI-ESM1-2-LR, MRI-ESM2-0, NorESM2-LM, and NorESM2-MM.</p>
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<p>Spatial distribution of relative changes in rainfall-induced landslides in China under different landslide threshold models.</p>
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<p>Spatial distribution of relative changes in rainfall-induced landslides in China across different future periods.</p>
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<p>Seasonal changes in relative landslide risk across different periods for each region.</p>
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