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Search Results (2,357)

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21 pages, 1112 KiB  
Article
Investigating the Mechanisms of Adventitious Root Formation in Semi-Tender Cuttings of Prunus mume: Phenotypic, Phytohormone, and Transcriptomic Insights
by Xiujun Wang, Yue Li, Zihang Li, Xiaowen Gu, Zixu Wang, Xiaotian Qin and Qingwei Li
Int. J. Mol. Sci. 2025, 26(6), 2416; https://doi.org/10.3390/ijms26062416 (registering DOI) - 7 Mar 2025
Abstract
Mei (Prunus mume Sieb. et Zucc.) is a rare woody species that flowers in winter, yet its large-scale propagation is limited by the variable ability of cuttings to form adventitious roots (ARs). In this study, two cultivars were compared: P. mume [...] Read more.
Mei (Prunus mume Sieb. et Zucc.) is a rare woody species that flowers in winter, yet its large-scale propagation is limited by the variable ability of cuttings to form adventitious roots (ARs). In this study, two cultivars were compared: P. mume ‘Xiangxue Gongfen’ (GF), which roots readily, and P. mume ‘Zhusha Wanzhaoshui (ZS), which is more recalcitrant. Detailed anatomical observations revealed that following cutting, the basal region expanded within 7 days, callus tissues had appeared by 14 days, and AR primordia emerged between 28 and 35 days. Notably, compared to the recalcitrant cultivar ZS, the experimental cultivar GF exhibited significantly enhanced callus tissue formation and AR primordia differentiation. Physiological analyses showed that the initial IAA concentration was highest at day 0, whereas cytokinin (tZR) and gibberellin (GA1) levels peaked at 14 days, with ABA gradually decreasing over time, resulting in increased IAA/tZR and IAA/GA1 ratios during the rooting process. Transcriptomic profiling across these time points identified significant upregulation of key genes (e.g., PmPIN3, PmLOG2, PmCKX5, PmIAA13, PmLAX2, and PmGA2OX1) and transcription factors (PmWOX4, PmSHR, and PmNAC071) in GF compared to ZS. Moreover, correlation analyses revealed that PmSHR expression is closely associated with IAA and tZR levels. Overexpression of PmSHR in tobacco further validated its role in enhancing lateral root formation. Together, these findings provide comprehensive insights into the temporal, hormonal, and genetic regulation of AR formation in P. mume, offering valuable strategies for improving its propagation. Full article
(This article belongs to the Section Molecular Plant Sciences)
24 pages, 8059 KiB  
Article
MMRAD-Net: A Multi-Scale Model for Precise Building Extraction from High-Resolution Remote Sensing Imagery with DSM Integration
by Yu Gao, Huiming Chai and Xiaolei Lv
Remote Sens. 2025, 17(6), 952; https://doi.org/10.3390/rs17060952 - 7 Mar 2025
Abstract
High-resolution remote sensing imagery (HRRSI) presents significant challenges for building extraction tasks due to its complex terrain structures, multi-scale features, and rich spectral and geometric information. Traditional methods often face limitations in effectively integrating multi-scale features while maintaining a balance between detailed and [...] Read more.
High-resolution remote sensing imagery (HRRSI) presents significant challenges for building extraction tasks due to its complex terrain structures, multi-scale features, and rich spectral and geometric information. Traditional methods often face limitations in effectively integrating multi-scale features while maintaining a balance between detailed and global semantic information. To address these challenges, this paper proposes an innovative deep learning network, Multi-Source Multi-Scale Residual Attention Network (MMRAD-Net). This model is built upon the classical encoder–decoder framework and introduces two key components: the GCN OA-SWinT Dense Module (GSTDM) and the Res DualAttention Dense Fusion Block (R-DDFB). Additionally, it incorporates Digital Surface Model (DSM) data, presenting a novel feature extraction and fusion strategy. Specifically, the model enhances building extraction accuracy and robustness through hierarchical feature modeling and a refined cross-scale fusion mechanism, while effectively preserving both detail information and global semantic relationships. Furthermore, we propose a Hybrid Loss, which combines Binary Cross-Entropy Loss (BCE Loss), Dice Loss, and an edge-sensitive term to further improve the precision of building edges and foreground reconstruction capabilities. Experiments conducted on the GF-7 and WHU datasets validate the performance of MMRAD-Net, demonstrating its superiority over traditional methods in boundary handling, detail recovery, and adaptability to complex scenes. On the GF-7 Dataset, MMRAD-Net achieved an F1-score of 91.12% and an IoU of 83.01%. On the WHU Building Dataset, the F1-score and IoU were 94.04% and 88.99%, respectively. Ablation studies and transfer learning experiments further confirm the rationality of the model design and its strong generalization ability. These results highlight that innovations in multi-source data fusion, multi-scale feature modeling, and detailed feature fusion mechanisms have enhanced the accuracy and robustness of building extraction. Full article
18 pages, 6260 KiB  
Article
The Effect of Aluminum Deformation Conditions on Microhardness and Indentation Size Effect Characteristics
by Peter Blaško, Jozef Petrík, Marek Šolc, Mária Mihaliková, Lenka Girmanová, Alena Pribulová, Peter Futáš, Joanna Furman and Kuczyńska-Chałada Marzena
Crystals 2025, 15(3), 252; https://doi.org/10.3390/cryst15030252 - 7 Mar 2025
Abstract
The degree and speed of deformation are factors that influence microstructure and mechanical properties. Aluminum (99.5%) was used as the test material in this experiment. This material is currently mainly used in the electrical industry to manufacture conductors as a substitute for the [...] Read more.
The degree and speed of deformation are factors that influence microstructure and mechanical properties. Aluminum (99.5%) was used as the test material in this experiment. This material is currently mainly used in the electrical industry to manufacture conductors as a substitute for the more expensive copper. The cylindrical samples were deformed at a strain rate of up to 2500 s−1, and the degree of deformation was up to 85%. At the point place of maximum deformation, usually in the center of the sample, the microhardness was measured under various loads, between 10 gf and 100 gf. The obtained data were used to determine the characteristics or parameters of the indentation size effect (ISE) and the influence of the deformation conditions on the microhardness. The results obtained were processed by linear regression analysis, followed by the creation of deformation maps. Full article
(This article belongs to the Special Issue Microstructural Characterization and Property Analysis of Alloys)
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<p>Relationship between Meyer’s index n and tensile or pressure deformation [<a href="#B9-crystals-15-00252" class="html-bibr">9</a>].</p>
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<p>Values of rate c<sub>1</sub>/c<sub>2</sub> measured on sample series A–H.</p>
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<p>Influence of the degree of deformation ε on the microhardness HV0.05.</p>
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<p>Influence of the strain rate <math display="inline"><semantics> <mrow> <mover accent="true"> <mrow> <mi>φ</mi> </mrow> <mo>˙</mo> </mover> </mrow> </semantics></math> on the microhardness HV0.05.</p>
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<p>Influence of the degree of deformation ε on Meyer’s index n.</p>
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<p>Influence of the strain rate <math display="inline"><semantics> <mrow> <mover accent="true"> <mrow> <mi>φ</mi> </mrow> <mo>˙</mo> </mover> </mrow> </semantics></math> on Meyer’s index n.</p>
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<p>Deformation map for HV0.05 as a function of deformation ε and strain rate <math display="inline"><semantics> <mrow> <mover accent="true"> <mrow> <mi>φ</mi> </mrow> <mo>˙</mo> </mover> </mrow> </semantics></math> created by Origin 8.</p>
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<p>Deformation map for Meyer’s index n as a function of deformation ε and strain rate <math display="inline"><semantics> <mrow> <mover accent="true"> <mrow> <mi>φ</mi> </mrow> <mo>˙</mo> </mover> </mrow> </semantics></math> created by Origin 8.</p>
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<p>Deformation map for HV0.05 as a function of deformation ε and strain rate <math display="inline"><semantics> <mrow> <mover accent="true"> <mrow> <mi>φ</mi> </mrow> <mo>˙</mo> </mover> </mrow> </semantics></math> created by regression.</p>
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<p>Deformation map for Meyer’s index n as a function of deformation ε and strain rate <math display="inline"><semantics> <mrow> <mover accent="true"> <mrow> <mi>φ</mi> </mrow> <mo>˙</mo> </mover> </mrow> </semantics></math> created by regression.</p>
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<p>Deformation map for “true hardness” H<sub>PSR</sub>A<sub>1</sub> as a function of deformation ε and strain rate <math display="inline"><semantics> <mrow> <mover accent="true"> <mrow> <mi>φ</mi> </mrow> <mo>˙</mo> </mover> </mrow> </semantics></math> created by Origin 8.</p>
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<p>Deformation map for c<sub>0</sub> as a function of deformation ε and strain rate <math display="inline"><semantics> <mrow> <mover accent="true"> <mrow> <mi>φ</mi> </mrow> <mo>˙</mo> </mover> </mrow> </semantics></math> created by Origin 8.</p>
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<p>Deformation map for W as a function of deformation ε and strain rate <math display="inline"><semantics> <mrow> <mover accent="true"> <mrow> <mi>φ</mi> </mrow> <mo>˙</mo> </mover> </mrow> </semantics></math> created by Origin 8.</p>
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<p>Deformation map for the ratio c<sub>1</sub>/c<sub>2</sub> as a function of deformation ε and strain rate <math display="inline"><semantics> <mrow> <mover accent="true"> <mrow> <mi>φ</mi> </mrow> <mo>˙</mo> </mover> </mrow> </semantics></math> created by Origin 8.</p>
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<p>Deformation map for the ratio c<sub>1</sub>/c<sub>2</sub> as a function of deformation ε and strain rate <math display="inline"><semantics> <mrow> <mover accent="true"> <mrow> <mi>φ</mi> </mrow> <mo>˙</mo> </mover> </mrow> </semantics></math> created by Quantum XL.</p>
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<p>Deformation map for Meyer’s index n as a function of deformation ε and strain rate <math display="inline"><semantics> <mrow> <mover accent="true"> <mrow> <mi>φ</mi> </mrow> <mo>˙</mo> </mover> </mrow> </semantics></math> created by Quantum XL.</p>
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18 pages, 13360 KiB  
Article
The Relationships Between Vegetation Changes and Groundwater Table Depths for Woody Plants in the Sangong River Basin, Northwest China
by Han Wu, Jie Bai, Junli Li, Ran Liu, Jin Zhao and Xuanlong Ma
Remote Sens. 2025, 17(5), 937; https://doi.org/10.3390/rs17050937 - 6 Mar 2025
Viewed by 83
Abstract
Woody plants serve as crucial ecological barriers surrounding oases in arid and semi-arid regions, playing a vital role in maintaining the stability and supporting sustainable development of oases. However, their sparse distribution makes significant challenges in accurately mapping their spatial extent using medium-resolution [...] Read more.
Woody plants serve as crucial ecological barriers surrounding oases in arid and semi-arid regions, playing a vital role in maintaining the stability and supporting sustainable development of oases. However, their sparse distribution makes significant challenges in accurately mapping their spatial extent using medium-resolution remote sensing imagery. In this study, we utilized high-resolution Gaofen (GF-2) and Landsat 5/7/8 satellite images to quantify the relationship between vegetation growth and groundwater table depths (GTD) in a typical inland river basin from 1988 to 2021. Our findings are as follows: (1) Based on the D-LinkNet model, the distribution of woody plants was accurately extracted with an overall accuracy (OA) of 96.06%. (2) Approximately 95.33% of the desert areas had fractional woody plant coverage (FWC) values of less than 10%. (3) The difference between fractional woody plant coverage and fractional vegetation cover proved to be a fine indicator for delineating the range of desert-oasis ecotone. (4) The optimal GTD for Haloxylon ammodendron and Tamarix ramosissima was determined to be 5.51 m and 3.36 m, respectively. Understanding the relationship between woody plant growth and GTD is essential for effective ecological conservation and water resource management in arid and semi-arid regions. Full article
(This article belongs to the Section Ecological Remote Sensing)
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<p>(<b>a</b>) represents the location of the study area, (<b>b</b>) represents groundwater contour maps.</p>
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<p>Technical workflow chart.</p>
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<p>Schematic diagram for calculating the time-series enhanced vegetation index (EVI) for woody plants combined GF-2 and Landsat satellite images.</p>
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<p>Detailed comparison of woody plant mapping using three models at four sample sites. (a), (b), (c) and (d) represent the number of each sample site. Red represents extracted patches of woody plants.</p>
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<p>(<b>a</b>) the maps of fractional woody plant cover (FWC) in the middle and lower reaches of the SRB; (<b>b</b>) the maps of fractional vegetation cover (FVC) in the middle and lower reaches of the SRB; (<b>c</b>) the statistical distribution of FWC (<b>d</b>) the statistical distribution of FVC.</p>
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<p>(<b>a</b>) represents the change curves of FVC and FWC, and (<b>b</b>) represents the differences between FVC and FWC within 15 km from oasis.</p>
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<p>Spatiotemporal variations (<b>a</b>), statistical distribution (<b>b</b>) and annual time series (<b>c</b>) of the EVI from 1988 to 2021 in the middle and lower reaches of the SRB.</p>
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<p>Impact of GTD on EVI for (<b>a</b>,<b>b</b>) APOL, (<b>c</b>,<b>d</b>) APOU and (<b>e</b>,<b>f</b>) ADFO in the middle and lower reaches of the SRB. The pink-shaded region shows the 95% confidence interval of the regression.</p>
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<p>Impact of GTD and precipitation (PRE) on EVI for (<b>a</b>,<b>b</b>) <span class="html-italic">H. ammodendron</span> and (<b>c</b>,<b>d</b>) <span class="html-italic">T. ramosissima</span> in the lower reaches of the SRB. The pink-shaded region shows the 95% confidence interval of the regression.</p>
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<p>Diagram of the lognormal distribution fit between EVI and GTD for <span class="html-italic">H. amodendron</span> (red) and <span class="html-italic">T. ramosissima</span> (green) in the lower reaches of the SRB.</p>
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25 pages, 26721 KiB  
Article
Effective Cultivated Land Extraction in Complex Terrain Using High-Resolution Imagery and Deep Learning Method
by Zhenzhen Liu, Jianhua Guo, Chenghang Li, Lijun Wang, Dongkai Gao, Yali Bai and Fen Qin
Remote Sens. 2025, 17(5), 931; https://doi.org/10.3390/rs17050931 - 6 Mar 2025
Viewed by 102
Abstract
The accurate extraction of cultivated land information is crucial for optimizing regional farmland layouts and enhancing food supply. To address the problem of low accuracy in existing cultivated land products and the poor applicability of cultivated land extraction methods in fragmented, small parcel [...] Read more.
The accurate extraction of cultivated land information is crucial for optimizing regional farmland layouts and enhancing food supply. To address the problem of low accuracy in existing cultivated land products and the poor applicability of cultivated land extraction methods in fragmented, small parcel agricultural landscapes and complex terrain mapping, this study develops an advanced cultivated land extraction model for the western part of Henan Province, China, utilizing Gaofen-2 (GF-2) imagery and an improved U-Net architecture to achieve a 1 m resolution regional mapping in complex terrain. We obtained optimal input data for the U-Net model by fusing spectral features and vegetation index features from remote sensing images. We evaluated and validated the effectiveness of the proposed method from multiple perspectives and conducted a cultivated land change detection and agricultural landscape fragmentation assessment in the study area. The experimental results show that the proposed method achieved an F1 score of 89.55% for the entire study area, with an F1 score ranging from 83.84% to 90.44% in the hilly or transitional zones. Compared to models that solely rely on spectral features, the feature selection-based model demonstrates superior performance in hilly and adjacent mountainous regions, with improvements of 4.5% in Intersection over Union (IoU). Cultivated land mapping results show that 83.84% of the cultivated land parcels are smaller than 0.64 hectares. From 2017 to 2022, the overall cultivated land area decreased by 15.26 km2, with the most significant reduction occurring in the adjacent hilly areas, where the land parcels are small and fragmented. This trend highlights the urgent need for effective land management strategies to address fragmentation and prevent further loss of cultivated land in these areas. We anticipate that the findings can contribute to precision agriculture management and agricultural modernization in complex terrains of the world. Full article
(This article belongs to the Special Issue Advances in Remote Sensing for Crop Monitoring and Food Security)
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<p>The overall workflow of this study.</p>
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<p>Geographic location and topography of the research region. Abbreviations for township names: Dianzhuang Town (DZT), Huaixin Street (HXS), Shouyangshan Street (SYSS), Zhai Town (ZT), Yuetang Town (YTT), Guxian Town (GXT), Goushi Town (GST), Fudian Town (FDT), Gaolong Town (GLT), Shanhua Town (SHT), Mangling Town (MLT), Dakou Town (DKT), Shangcheng Street (SCS), Yiluo Street (YLS), Koudian Town (KDT), Pangcun Town (PCT), Licun Town (LCT), and Zhuge Town (ZGT).</p>
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<p>Sample examples in the study area. (<b>a</b>,<b>c</b>) show the fused standard false-color composite images from GF-2, acquired on 16 December 2020, while (<b>b</b>,<b>d</b>) show the corresponding samples.</p>
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<p>Location distribution of predicted site. (<b>A</b>–<b>G</b>) are the corresponding GF-2 standard false-color composite images. Site A is in the northern hills, Sites B and C are in the plains, Site D is in the transition zone, and Sites E, F, and G are in the southern hills and plains, respectively. Employing 30 m resolution SRTM DEM data, the research delineated the study area’s landforms into three types based on elevation: plains (0–200 m), hills (200–500 m), and mountains (over 500 m).</p>
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<p>Improved U-Net architecture employed in the study (built upon Ronneberger et al. [<a href="#B32-remotesensing-17-00931" class="html-bibr">32</a>]).</p>
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<p>Mean and standard deviation of each feature.</p>
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<p>The PCA and PFI scores results for each feature. (<b>a</b>) shows the pearson correlation analysis results between features. The correlation results among these features are significant at the 0.001 level. (<b>b</b>) shows the permutation feature importance scores for each feature. PFI scores are uniformly multiplied by a constant value of 1000.</p>
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<p>Cultivated land map spatial details in the study area for 2022. (<b>a</b>) represents the cultivated land extraction results for the entire study area; (<b>b</b>,<b>c</b>) show cultivated land extraction results for the northern hilly region; (<b>d</b>) represents results for the central plain; (<b>e</b>,<b>f</b>) show results for the southern hilly region. (<b>g</b>–<b>k</b>) display zoomed-in views within the blue boxes from (<b>b</b>–<b>f</b>), overlaid with GF-2 standard false-color imagery.</p>
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<p>Cultivated land area changes results from 2017 to 2022.</p>
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<p>Map and statistics of field size in the study area for 2020. (<b>a</b>) shows the field size distribution map for the entire study area; (<b>b</b>), (<b>c</b>), and (<b>d</b>) represent the magnified views of the fields in the northern hilly area, central plain area, and southern hilly area of the study region, respectively.</p>
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<p>Training process of U-Net_FS and U-Net_WFS models with different numbers of sample patches. (<b>a</b>–<b>f</b>) represent the changes in model accuracy and validation loss for the U-Net_FS and U-Net_WFS models at patch sizes of 512 × 512 pixels, 448 × 448 pixels, 256 × 256 pixels, 224 × 224 pixels, 128 × 128 pixels, and 112 × 112 pixels, respectively.</p>
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<p>Cultivated land extraction results in the test areas. Test areas A, B, and C are located in plain regions, while area D represents a hilly region. Green represents cultivated land. (<b>a</b>) shows the schematic map of the test area location; (<b>b</b>,<b>d</b>,<b>f</b>,<b>h</b>) are standard false-color images of GF-2 for test areas A, B, C, and D, respectively; (<b>c</b>,<b>e</b>,<b>g</b>,<b>i</b>) are the corresponding cultivated land extraction results for these images.</p>
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<p>A visual comparison of the results between the cultivated land extraction method proposed in this study and publicly released cultivated land products. Green represents cultivated land, and (<b>g</b>–<b>x</b>) denotes the zoomed-in views within the blue boxes from (<b>a</b>–<b>f</b>).</p>
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<p>The classification sensitivity of the U-Net model to each feature.</p>
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<p>Correlation between cultivated land fragmentation and potential influencing factors. The result is significant at the 0.001 level.</p>
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22 pages, 2182 KiB  
Article
Determination and Comparison of Fat and Fibre Contents in Gluten-Free and Gluten-Containing Flours and Breads: Nutritional Implications
by María Purificación González, Paloma López-Laiz, María Achón, Rocío de la Iglesia, Violeta Fajardo, Ángela García-González, Natalia Úbeda and Elena Alonso-Aperte
Foods 2025, 14(5), 894; https://doi.org/10.3390/foods14050894 - 5 Mar 2025
Viewed by 189
Abstract
The absence of gluten is a technological challenge that requires the addition of components to replace the unique viscoelastic properties of gluten, thus altering the nutritional composition of gluten-free (GF) breads. Moreover, GF flours may have different compositions as compared to gluten-containing (GC) [...] Read more.
The absence of gluten is a technological challenge that requires the addition of components to replace the unique viscoelastic properties of gluten, thus altering the nutritional composition of gluten-free (GF) breads. Moreover, GF flours may have different compositions as compared to gluten-containing (GC) counterparts because of a different origin. This may impact the nutritional quality of GF diets. The aim of the study is to provide updated analytical data on moisture, fat, and fibre contents in GF flour and bread samples, and compare them with their GC counterparts, as well as to analyse ingredients and how they impact nutritional quality. A total of 30 different flours and 24 types of bread were analysed using AOAC methods. GF cereal flours contain more fat than GC flours (3.5 ± 2.1% vs. 2.5 ± 2.1%, p < 0.001), as well as GF flours from pseudocereals, except for wholemeal buckwheat (2.6 ± 0.1%). Fibre content is lower in GF flours (3.6 ± 3.1% vs. 7.1 ± 3.9%, p = 0.03), except for GF pseudocereal and legume flours. GF breads contain almost twice as much fat 6.6 ± 2.3% vs. 1.4 ± 0.2%, p < 0.001, and 4.2 ± 1.2%, p < 0.001) and fibre (7.3 ± 2.4% vs. 2.8 ± 0.5%, p < 0.001, and 4.9 ± 2.1%, p = 0.002) as GC breads. This is due to the raw materials themselves and to the addition of ingredients, such as regular and high oleic sunflower oil, and psyllium. Fibre ingredients and additives are more frequently used in ready-to-eat GF flours and breads, and more GF breads also contain fat-based ingredients, as compared to GC. Amaranth and chickpea flours are good alternatives to produce breads with better nutritional quality. Analysis of GF products for critical nutrients is peremptory because of continuing technological and nutritional innovation. Full article
(This article belongs to the Special Issue Gluten-Free Food and Celiac Disease: 2nd Edition)
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<p>Preparation procedures of Flour and bread samples.</p>
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<p>Frequency of use (%) of fat and fibre ingredients in the formulation of ready-to-use gluten-containing and gluten-free flour mixes. Expressed as a percentage based on the total number of products within the category or the subgroup.</p>
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<p>Average moisture, fat and fibre contents in gluten-containing and gluten-free flours. (*) <span class="html-italic">p</span> &gt; 0.05 GC vs. GF.</p>
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<p>Frequency of use (%) of fat (<b>a</b>) and fibre (<b>b</b>) ingredients in the formulation of gluten-containing and gluten-free breads. SFA: saturated fatty acid.</p>
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<p>Average moisture, fat and fibre contents in gluten-containing and gluten-free bread. (*) <span class="html-italic">p</span> &gt; 0.05 GC vs. GF.</p>
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23 pages, 2310 KiB  
Review
Fighting Bleb Fibrosis After Glaucoma Surgery: Updated Focus on Key Players and Novel Targets for Therapy
by Matteo Sacchi, Davide Tomaselli, Maria Ludovica Ruggeri, Francesca Bianca Aiello, Pierfilippo Sabella, Stefano Dore, Antonio Pinna, Rodolfo Mastropasqua, Mario Nubile and Luca Agnifili
Int. J. Mol. Sci. 2025, 26(5), 2327; https://doi.org/10.3390/ijms26052327 - 5 Mar 2025
Viewed by 117
Abstract
Filtration bleb (FB) fibrosis represents the primary risk factor for glaucoma filtration surgery (GFS) failure. We reviewed the most recent literature on post-GFS fibrosis in humans, focusing on novel molecular pathways and antifibrotic treatments. Three main literature searches were conducted. First, we performed [...] Read more.
Filtration bleb (FB) fibrosis represents the primary risk factor for glaucoma filtration surgery (GFS) failure. We reviewed the most recent literature on post-GFS fibrosis in humans, focusing on novel molecular pathways and antifibrotic treatments. Three main literature searches were conducted. First, we performed a narrative review of two models of extra-ocular fibrosis, idiopathic pulmonary fibrosis and skin fibrosis, to improve the comprehension of ocular fibrosis. Second, we conducted a systematic review of failed FB features in the PubMed, Embase, and Cochrane Library databases. Selected studies were screened based on the functional state and morphological features of FB. Third, we carried out a narrative review of novel potential antifibrotic molecules. In the systematic review, 11 studies met the criteria for analysis. Immunohistochemistry and genomics deemed SPARC and transglutaminases to be important for tissue remodeling and attributed pivotal roles to TGFβ and M2c macrophages in promoting FB fibrosis. Four major mechanisms were identified in the FB failure process: inflammation, fibroblast proliferation and myofibroblast conversion, vascularization, and tissue remodeling. On this basis, an updated model of FB fibrosis was described. Among the pharmacological options, particular attention was given to nintedanib, pirfenidone, and rapamycin, which are used in skin and pulmonary fibrosis, since their promising effects are demonstrated in experimental models of FB fibrosis. Based on the most recent literature, modern patho-physiological models of FB fibrosis should consider TGFβ and M2c macrophages as pivotal players and favorite targets for therapy, while research on antifibrotic strategies should clinically investigate medications utilized in the management of extra-ocular fibrosis. Full article
(This article belongs to the Special Issue Advances In and Insights into the Treatment of Glaucoma)
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<p>PRISMA diagram of the systematic literature review process. From 3 different databases, 335 records were identified. After removing duplicates, 288 items were selected. Then, 277 records were excluded because of inclusion criteria; thus, 11 records were included in the qualitative synthesis.</p>
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<p>Functional model of ocular fibrosis after glaucoma surgery. The figure aims at connecting the factors and molecules that were found to have a central role in the analyzed studies. Following the surgical procedure (orange), we highlighted central processes (yellow) following surgical procedure potentially involved in surgery failure in hemostasis and fibrin clot formation (1), inflammation (1), proliferation of fibroblasts and myofibroblast conversion (2), filtration bleb vascularization (3), and tissue remodeling (4). In the center of the figure, we represented TGFβ, the key element of the model, with the elements involved in its pathways. We aimed to highlight cells (green), upregulated factors (blue), and downregulated factors (red) that were found to be significantly related to the processes discussed (yellow). Green arrows refer to the main processes of cellular phenotype change. Thus, we tried to connect all the identified elements, despite the presence of discordance evidence (violet). * Refers to IL13 activity on IL13RA expressed by fibroblasts.</p>
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<p>Molecular targets of promising molecules in glaucoma surgery. The figure shows the main molecular pathways involved in the nintedanib, pirfenidone, and rapamycin actions. FGFR1-3: kinase activity of the fibroblast growth factor receptor; VEGFR-1-3: vascular endothelial growth factor receptor; PDGFR: platelet-derived growth factor receptors; TGFβ: transforming growth factor-β; ATP: adenosine triphosphate; CTGF: connective tissue growth factor; PDGF: platelet-derived growth factors; TNFα: tumor necrosis factor-alpha; mTOR: mammalian target of rapamycin; ⊗: Inhibition.</p>
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7 pages, 8880 KiB  
Interesting Images
A Rare Vitreoretinal Degenerative Disorder: Goldmann–Favre Syndrome Complicated with Choroidal Neovascularization in a Pediatric Patient
by Klaudia Szala and Bogumiła Wójcik-Niklewska
Diagnostics 2025, 15(5), 622; https://doi.org/10.3390/diagnostics15050622 - 5 Mar 2025
Viewed by 114
Abstract
Goldmann–Favre syndrome (GFS) is a rare vitreoretinal degenerative disorder caused by mutations in the NR2E3 gene located on the short arm of chromosome 15. This condition, inherited in an autosomal recessive manner, was first described by Favre in two siblings, with Ricci later [...] Read more.
Goldmann–Favre syndrome (GFS) is a rare vitreoretinal degenerative disorder caused by mutations in the NR2E3 gene located on the short arm of chromosome 15. This condition, inherited in an autosomal recessive manner, was first described by Favre in two siblings, with Ricci later confirming its hereditary pattern. In GFS, rod photoreceptors are essentially replaced by S-cone photoreceptors. Enhanced S-Cone Syndrome (ESCS) and Goldmann–Favre syndrome are two distinct entities within the spectrum of retinal degenerative diseases, both caused by mutations in the NR2E3 gene. Despite sharing a common genetic basis, these conditions exhibit significantly different clinical phenotypes. ESCS is characterized by an excessive number of S-cones (blue-sensitive cones) with degeneration of rods and L-/M-cones, leading to increased sensitivity to blue light and early-onset night blindness. In contrast, GFS is considered a more severe form of ESCS, involving additional features such as retinal schisis, vitreous degeneration, and more pronounced visual impairment. GFS typically manifests in the first decade of life as night blindness (nyctalopia) and progressive visual acuity impairment. The clinical features include degenerative vitreous changes such as liquefaction, strands, and bands, along with macular and peripheral retinoschisis, posterior subcapsular cataract, atypical pigmentary dystrophy, and markedly abnormal or nondetectable electroretinograms (ERGs). Although peripheral retinoschisis is more common in GFS, central retinoschisis may also occur. Despite the consistent genetic basis, the phenotype of GFS can vary significantly among individuals. The differential diagnosis should consider diseases within the retinal degenerative spectrum, including retinitis pigmentosa, congenital retinoschisis, and secondary pigmentary retinopathy. Full article
(This article belongs to the Section Medical Imaging and Theranostics)
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<p>A 16-year-old patient presented to the Ophthalmology Department with a complaint of progressive vision loss observed over the past year. Since childhood, the patient has experienced difficulties with mobility and impaired night vision. Apart from ophthalmological issues, including hyperopia in both eyes, the presence of a neovascular membrane in the right eye, and astigmatism in both eyes, no other chronic diseases were diagnosed, and the family medical history remains clinically insignificant. His best corrected visual acuity (BCVA) was 0.4 in the right eye and 0.6 in the left eye. Ocular examination revealed a normal anterior segment with bilateral schisis of the macula. Typical fundus findings combined with night blindness and electroretinogram abnormalities permitted the diagnosis of Goldmann–Favre vitreoretinal degeneration [<a href="#B1-diagnostics-15-00622" class="html-bibr">1</a>,<a href="#B2-diagnostics-15-00622" class="html-bibr">2</a>]. Examination of the fundus revealed clumps of hyperplastic retinal pigment epithelium (RPE) beginning in the temporal retina, extending along the retinal vascular arcades, and reaching the optic disc in both eyes. Fundus photographs show nummular lesions with atrophic centers and hyperpigmented borders in both eyes: (<b>A</b>) left eye, (<b>B</b>) right eye. Macular edema with schisis at the fovea was observed in both eyes. The electroretinography results were abnormal, showing extinguished activity of both cones and rods [<a href="#B3-diagnostics-15-00622" class="html-bibr">3</a>,<a href="#B4-diagnostics-15-00622" class="html-bibr">4</a>]. Optical coherence tomography scans revealed hyporeflective spaces in the macular area and irregularities of the chorioretinal complex in the degenerative pigmentary areas. In cases of children with night vision disturbances, diagnostic procedures should include fluorescein angiography in addition to OCT and electrophysiological examinations. This case is particularly unique, as we describe a child with Goldmann–Favre syndrome (GFS) who has already developed choroidal neovascularization (CNV). Such an occurrence is exceptionally rare in pediatric cases of GFS, emphasizing the importance of early and comprehensive diagnostic approaches, as well as the need for vigilant monitoring in similar cases. During hospitalization, an anti-VEGF (ranibizumab) injection was administered, resulting in improved visual acuity. The patient’s clinical presentation clearly supported the diagnosis of GFS. The child was also referred to a genetic clinic for definitive confirmation of the diagnosis and is currently awaiting further testing [<a href="#B5-diagnostics-15-00622" class="html-bibr">5</a>,<a href="#B6-diagnostics-15-00622" class="html-bibr">6</a>,<a href="#B7-diagnostics-15-00622" class="html-bibr">7</a>]. Given the chronic and progressive nature of GFS, as well as the risk of CNV recurrence, the patient remains under regular follow-up at the Ophthalmology Clinic for ongoing monitoring and management.</p>
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<p>Optical coherence tomography (OCT) reveals central retinoschisis and loss of the photoreceptor layer, sudden increase in retinal thickness, and loss of the retinal laminar structure in the affected retina. Cystoid macular edema (green arrows) at the fovea is observed in both eyes. OCT images on the left (<b>A</b>,<b>C</b>), presenting patient’s left eye, showing multiple large cystic spaces and multiple macular schisis cavities in the neurosensory retina of the macula. Small cysts are visible in the inner nuclear layer (blue arrow). OCT images of patient’s right eye (<b>B</b>,<b>D</b>) (right side of the image) showing multiple cystic spaces in the neurosensory retina and chorioretinal neovascularization (CNV) in the macular area (red arrow).</p>
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<p>Fluorescein angiography (FA) of the left eye reveals contrast leakage on the optic disc at the 16th second. Blood flow through the main vessels is preserved. Angiographic features of non-leaking cystoid macular edema (CME) are visible, indicating the presence of retinoschisis, as highlighted by the blue arrows (<b>A</b>–<b>C</b>). In the periphery, numerous punctate foci of pigment blockage corresponding to pigmentary changes are observed, marked by yellow arrowheads, as well as areas of hyperfluorescence corresponding to window defects, indicated by pink arrowheads (<b>D</b>–<b>G</b>). In the late phase of the angiography (<b>H</b>), contrast persists in regions corresponding to the window defects.</p>
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<p>Fluorescein angiography (FA) of the right eye demonstrates preserved blood flow through the main vessels. Angiographic features of non-leaking CME are observed, indicating the presence of retinoschisis, as highlighted by the blue arrows (<b>A</b>,<b>B</b>). Additionally, in the macula, a focus of increasing hyperfluorescence over time suggests the presence of CNV, marked by green arrows. Nasal to the macula, a focus of pigment blockage corresponds to a hemorrhage, indicated by the red arrows. In the peripheral regions (<b>C</b>–<b>F</b>), numerous punctate foci of pigment blockage are visible, corresponding to pigmentary changes, as marked by yellow arrowheads. Additionally, areas of hyperfluorescence are observed, which correspond to window defects, indicated by pink arrowheads. In the late phase of the angiography (<b>G</b>,<b>H</b>), contrast persists in areas of leakage associated with CNV. This case of a child with Goldmann–Favre syndrome who developed CNV is extremely rare and highlights the importance of an individualized diagnostic and therapeutic approach in such situations. The current literature suggests that diode verteporfin photodynamic therapy (V-PDT) and intraocular anti-VEGF injections can be used either as monotherapy or in combination for the treatment of pediatric CNV. Reports indicate that anti-VEGF therapy, such as bevacizumab, has been successfully utilized following a relapse of subretinal fluid after photodynamic therapy, leading to remission of the neovascular membrane and improved visual outcomes. However, due to the rarity of CNV in pediatric patients, data on long-term efficacy and safety remain limited, highlighting the need for further research in this area [<a href="#B8-diagnostics-15-00622" class="html-bibr">8</a>].</p>
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24 pages, 6145 KiB  
Article
Flood Mapping and Assessment of Crop Damage Based on Multi-Source Remote Sensing: A Case Study of the “7.27” Rainstorm in Hebei Province, China
by Chenhao Wen, Zhongchang Sun, Hongwei Li, Youmei Han, Dinoo Gunasekera, Yu Chen, Hongsheng Zhang and Xiayu Zhao
Remote Sens. 2025, 17(5), 904; https://doi.org/10.3390/rs17050904 - 4 Mar 2025
Viewed by 209
Abstract
Flooding is among the world’s most destructive natural disasters. From 27 July to 1 August 2023, Zhuozhou City and surrounding areas in Hebei Province experienced extreme rainfall, severely impacting local food security. To swiftly map the spatial and temporal distribution of the floodwaters [...] Read more.
Flooding is among the world’s most destructive natural disasters. From 27 July to 1 August 2023, Zhuozhou City and surrounding areas in Hebei Province experienced extreme rainfall, severely impacting local food security. To swiftly map the spatial and temporal distribution of the floodwaters and assess the damage to major crops, this study proposes a water body identification method with a dual polarization band combination for synthetic-aperture radar (SAR) data to solve the differences in water body feature recognition in SAR due to different polarization modes. Based on the SAR water body extent, the flood inundation extent was mapped with GF-6 optical data. In addition, Landsat-8 data were used to generate information on significant crops in the study area, while Sentinel-2 data and the Google Earth Engine (GEE) platform were used to classify the extent of crop damage. The results indicate that the flood inundated 700.51 km2, 14.10% of the study area. Approximately 40,700 hectares (ha) or 8.46% of the main crops were affected, including 33,700 ha of maize, 4300 ha of vegetables, and 2800 ha of beans. Moderate crop damage was the most widespread, affecting 37.62% of the crops, while very extreme damage was the least, affecting 5.10%. Zhuozhou City experienced the most significant impact, with 13,700 ha of crop damage, accounting for 33.70% of the total. This study provides a computational framework for rapid flood monitoring using multi-source remote sensing data, which also serves as a reference for post-disaster recovery, agricultural production, and crop risk assessment. Full article
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<p>Overview of the study area. (<b>a</b>) Geographic profile of Hebei Province. (<b>b</b>) The study area located within Hebei Province. (<b>c</b>) Administrative divisions and topography of cities and counties in the study area. (<b>d</b>,<b>e</b>) Flooding situation and farmland in Zhuozhou City, from <a href="https://news.sina.com.cn" target="_blank">https://news.sina.com.cn</a> (accessed on 1 August 2023).</p>
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<p>Multi-source remote sensing data from the study area. (<b>a</b>–<b>c</b>) are GF-3 SAR image data, (<b>d</b>) are GF-6 optical data, and (<b>e</b>) are Landsat-8 optical data.</p>
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<p>Flow chart of extraction and identification of spatial and temporal variations in flooding and crop damage assessment.</p>
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<p>Histograms of backscatter coefficients of water bodies in different modes.</p>
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<p>Characteristics of water bodies in the Zhuo City disaster with three different modal images. (<b>a</b>) GF-3 HH image. (<b>b</b>) GF-3 HV image. (<b>c</b>) <math display="inline"><semantics> <mrow> <msub> <mrow> <mi>W</mi> </mrow> <mrow> <mi>I</mi> </mrow> </msub> </mrow> </semantics></math> calculated image. The red box shows the magnified water results Characteristics.</p>
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<p>Maps of spatial and temporal distribution of water body areas. (<b>A</b>–<b>C</b>) represent the distribution of water body areas before, during, and after the disaster, respectively. (<b>a</b>–<b>g</b>) represent the largest water body areas in Zhuozhou City, Gaobeidian City, Dingxing County, Xiong County, Rongcheng County, Bazhou City, and Wen’an County, respectively.</p>
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<p>Histogram of water body areas at different periods in each district and county of the study area.</p>
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<p>Synthesized map of flood inundation extent and major rivers. (<b>a</b>) Indicates the Xiaoqing River floodplain. (<b>b</b>) Langouwa flood storage and retention area. (<b>c</b>) The Dongdian flood storage area.</p>
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<p>Flood inundation areas of each city and county.</p>
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<p>NDVI synthesized image and damage analysis (<b>a</b>) NDVI synthesized values from 1 July to 15 July before the flood. (<b>b</b>) NDVI synthesized values from 13 August to 20 August after the flood. (<b>c</b>) Maximum NDVI difference values before and after the flood. (<b>d</b>) NDVI disaster level results.</p>
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<p>Spatial distribution of flood-affected crops. (<b>a</b>–<b>c</b>) represent the distribution and intensity of damage for maize, vegetables, and beans, respectively. (<b>d</b>) Intensity of each type of damage for the three crops as a percentage of their respective acreages. The red boxes represent enlarged affected crops.</p>
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<p>Quantitative crop damage assessment in cities and counties in the study area. (<b>a</b>–<b>g</b>) represent Zhuozhou City, Gaobeidian City, Dingxing County, Xiong County, Rongcheng County, Bazhou City, and Wen’an County, respectively.</p>
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12 pages, 258 KiB  
Article
Growth Performance of French Guinea Fowl Broilers Fed the Probiotics Lactobacillus reuteri and Streptomyces coelicolor
by Sarayu Bhogoju, Thyneice Taylor-Bowden, Collins N. Khwatenge and Samuel N. Nahashon
Bacteria 2025, 4(1), 13; https://doi.org/10.3390/bacteria4010013 - 4 Mar 2025
Viewed by 175
Abstract
The continuous use of antibiotics is associated with many complications in the poultry industry. Probiotics have emerged as a viable alternative over the past few decades to counter the adverse effects of antibiotics. No candidate probiotic microorganisms have been fully evaluated in the [...] Read more.
The continuous use of antibiotics is associated with many complications in the poultry industry. Probiotics have emerged as a viable alternative over the past few decades to counter the adverse effects of antibiotics. No candidate probiotic microorganisms have been fully evaluated in the poultry industry for their effectiveness as potential probiotics in guinea fowls (GFs) compared to chickens. Recently, a metagenome evaluation of GFs in our laboratory revealed a predominance of Lactobacillus reuteri (L. reuteri) and actinobacteria class of bacteria in their gastrointestinal tract. The aim of this study is to evaluate a well-known lactic acid probiotic bacterium (L. reuteri) and a unique probiotic (S. coelicolor) that has not been assessed in any guinea fowl species. In the current study, L. reuteri and Streptomyces coelicolor (S. coelicolor) were selected as probiotic bacteria, encapsulated, and added into French guinea fowl (FGF) feed individually at a concentration of 108 cfu/g or both microorganisms combined each at 104 cfu/g. In an 8-week study, 216-day-old guinea keets were randomly assigned to four dietary treatments as indicated: (1) L. reuteri (108 cfu/g); (2) S. coelicolor (108 cfu/g); (3) mixture of L. reuteri (104 cfu/g) and S. coelicolor (104 cfu/g); and (4) control treatment (no probiotics included). The L. reuteri, S. coelicolor, and L. reuteri + S. coelicolor were added into the feed using wheat middlings as a carrier at a final concentration of 108 cfu/g. The FGFs that were fed diets containing L. reuteri showed improved feed consumption at 3–8 weeks of age (WOA). The guineas fed L. reuteri and S. coelicolor showed a lower feed conversion ratio (FCR), which was significant at 2 and 8 WOA, and a numerically lower 8-week average FCR when compared with other dietary treatments. Differences in body weight gain among all dietary treatments were not significant. This research suggests that L. reuteri and S. coelicolor may have the potential for use as probiotics in FGFs when used in combination or separately. Full article
29 pages, 762 KiB  
Review
The Genetic and Biological Basis of Pseudoarthrosis in Fractures: Current Understanding and Future Directions
by Amalia Kotsifaki, Georgia Kalouda, Sousanna Maroulaki, Athanasios Foukas and Athanasios Armakolas
Diseases 2025, 13(3), 75; https://doi.org/10.3390/diseases13030075 - 3 Mar 2025
Viewed by 292
Abstract
Pseudoarthrosis—the failure of normal fracture healing—remains a significant orthopedic challenge affecting approximately 10–15% of long bone fractures, and is associated with significant pain, prolonged disability, and repeated surgical interventions. Despite extensive research into the pathophysiological mechanisms of bone healing, diagnostic approaches remain reliant [...] Read more.
Pseudoarthrosis—the failure of normal fracture healing—remains a significant orthopedic challenge affecting approximately 10–15% of long bone fractures, and is associated with significant pain, prolonged disability, and repeated surgical interventions. Despite extensive research into the pathophysiological mechanisms of bone healing, diagnostic approaches remain reliant on clinical findings and radiographic evaluations, with little innovation in tools to predict or diagnose non-union. The present review evaluates the current understanding of the genetic and biological basis of pseudoarthrosis and highlights future research directions. Recent studies have highlighted the potential of specific molecules and genetic markers to serve as predictors of unsuccessful fracture healing. Alterations in mesenchymal stromal cell (MSC) function, including diminished osteogenic potential and increased cellular senescence, are central to pseudoarthrosis pathogenesis. Molecular analyses reveal suppressed bone morphogenetic protein (BMP) signaling and elevated levels of its inhibitors, such as Noggin and Gremlin, which impair bone regeneration. Genetic studies have uncovered polymorphisms in BMP, matrix metalloproteinase (MMP), and Wnt signaling pathways, suggesting a genetic predisposition to non-union. Additionally, the biological differences between atrophic and hypertrophic pseudoarthrosis, including variations in vascularity and inflammatory responses, emphasize the need for targeted approaches to management. Emerging biomarkers, such as circulating microRNAs (miRNAs), cytokine profiles, blood-derived MSCs, and other markers (B7-1 and PlGF-1), have the potential to contribute to early detection of at-risk patients and personalized therapeutic approaches. Advancing our understanding of the genetic and biological underpinnings of pseudoarthrosis is essential for the development of innovative diagnostic tools and therapeutic strategies. Full article
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<p>“Key biological factors and Wnt/β-actin molecular pathway in pseudoarthrosis in fractures”: This figure illustrates the most crucial biological and molecular elements involved in pseudoarthrosis, highlighting their roles in non-union fracture. It depicts the interplay between BMPs, MMPs, macrophages, blood factors, and vascularization factors—such as VEGF, TGF-β, and IGF-1—as well as osteoprogenitor cells. Additionally, the figure emphasizes the Wnt pathway’s role in promoting RUNX2 expression in MSCs and pre-osteoblastic cells, ultimately influencing osteoblast function. Understanding these interactions provides insights into potential therapeutic targets for improving bone healing and fracture repair.</p>
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28 pages, 8366 KiB  
Article
Artificial Neural Network Modeling of Mechanical Properties of 3D-Printed Polyamide 12 and Its Fiber-Reinforced Composites
by Catalin Fetecau, Felicia Stan and Doina Boazu
Polymers 2025, 17(5), 677; https://doi.org/10.3390/polym17050677 - 3 Mar 2025
Viewed by 235
Abstract
Fused filament fabrication (FFF) has recently emerged as a sustainable digital manufacturing technology to fabricate polymer composite parts with complex structures and minimal waste. However, FFF-printed composite parts frequently exhibit heterogeneous structures with low mechanical properties. To manufacture high-end parts with good mechanical [...] Read more.
Fused filament fabrication (FFF) has recently emerged as a sustainable digital manufacturing technology to fabricate polymer composite parts with complex structures and minimal waste. However, FFF-printed composite parts frequently exhibit heterogeneous structures with low mechanical properties. To manufacture high-end parts with good mechanical properties, advanced predictive tools are required. In this paper, Artificial Neural Network (ANN) models were developed to evaluate the mechanical properties of 3D-printed polyamide 12 (PA) and carbon fiber (CF) and glass fiber (GF) reinforced PA composites. Tensile samples were fabricated by FFF, considering two input parameters, such as printing orientation and infill density, and tested to determine the mechanical properties. Then, single- and multi-target ANN models were trained using the forward propagation Levenberg–Marquardt algorithm. Post-training performance analysis indicated that the ANN models work efficiently and accurately in predicting Young’s modulus and tensile strength of the 3D-printed PA and fiber-reinforced PA composites, with most relative errors being far less than 5%. In terms of mechanical properties, such as Young’s modulus and tensile strength, the 3D-printed composites outperform the unreinforced PA. Printing PA composites with 0° orientation and 100% infill density results in a maximum increase in Young’s modulus (up to 98% for CF/PA and 32% for GF/PA) and tensile strength (up to 36% for CF/PA and 18% for GF/PA) compared to the unreinforced PA. This study underscores the potential of the ANN models to predict the mechanical properties of 3D-printed parts, enhancing the use of 3D-printed PA composite components in structural applications. Full article
(This article belongs to the Special Issue 3D Printing of Polymer Composite Materials)
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<p>Geometry of the 3D-printed samples and printing direction (all dimensions in mm).</p>
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<p>Configuration of the feed-forward neural network: (<b>a</b>) one output (Young’s modulus or tensile strength); (<b>b</b>) two outputs (Young’s modulus and tensile strength).</p>
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<p>SEM images of the fractured surface of the FFF-printed PA sample with (<b>a</b>) 0°, (<b>b</b>) 90°, and (<b>c</b>) ±45° printing orientation.</p>
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<p>SEM images of the fractured surface of the FFF-printed CF/PA sample with (<b>a</b>) 0°, (<b>b</b>) 90°, and (<b>c</b>) ±45° printing orientation.</p>
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<p>SEM images of the fractured surface of the FFF-printed GF/PA sample with (<b>a</b>) 0°, (<b>b</b>) 90°, and (<b>c</b>) ±45° printing orientation.</p>
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<p>Representative stress–strain curves for 3D-printed samples with 0° printing orientation: (<b>a</b>) PA; (<b>b</b>) CF/PA; (<b>c</b>) GF/PA.</p>
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<p>Effect of printing orientation on the stress–strain curves of 3D-printed (<b>a</b>) PA, (<b>b</b>) CF/PA and (<b>c</b>) GF/PA (100% infill density).</p>
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<p>Effect of fillers on the stress–strain curves of samples 3D-printed with 0° printing orientation and 100% infill density.</p>
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<p>Mechanical properties of 3D-printed PA and PA-based composites (<b>a</b>) Young’s modulus, (<b>b</b>) tensile strength, (<b>c</b>) stress at break, and (<b>d</b>) strain at break.</p>
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<p>Main effects plot for 3D-printed PA-based samples: (<b>a</b>) Young’s modulus, (<b>b</b>) tensile strength, (<b>c</b>) stress at break, and (<b>d</b>) strain at break.</p>
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<p>Comparison of experimental Young’s modulus and tensile strength with the predicted values for the optimized ANN model with one output: (<b>a</b>,<b>b</b>) Training results; (<b>c</b>,<b>d</b>) Testing results.</p>
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<p>Comparison of experimental Young’s modulus and tensile strength with the predicted values for the optimized ANN model with two outputs: (<b>a</b>,<b>b</b>) Training results; (<b>c</b>,<b>d</b>) Testing results.</p>
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<p>Comparison between the predicted outcomes using the regression and ANN models for 3D-printed: (<b>a</b>,<b>b</b>) PA, (<b>c</b>,<b>d</b>) GF/PA; and (<b>e</b>,<b>f</b>) CF/PA samples.</p>
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<p>Comparison between the predicted outcomes using the regression and ANN models for 3D-printed: (<b>a</b>,<b>b</b>) PA, (<b>c</b>,<b>d</b>) GF/PA; and (<b>e</b>,<b>f</b>) CF/PA samples.</p>
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24 pages, 5117 KiB  
Article
Estimation of Aboveground Biomass of Picea schrenkiana Forests Considering Vertical Zonality and Stand Age
by Guohui Zhang, Donghua Chen, Hu Li, Minmin Pei, Qihang Zhen, Jian Zheng, Haiping Zhao, Yingmei Hu and Jingwei Fan
Forests 2025, 16(3), 445; https://doi.org/10.3390/f16030445 - 1 Mar 2025
Viewed by 198
Abstract
The aboveground biomass (AGB) of forests reflects the productivity and carbon-storage capacity of the forest ecosystem. Although AGB estimation techniques have become increasingly sophisticated, the relationships between AGB, spatial distribution, and growth stages still require further exploration. In this study, the Picea schrenkiana [...] Read more.
The aboveground biomass (AGB) of forests reflects the productivity and carbon-storage capacity of the forest ecosystem. Although AGB estimation techniques have become increasingly sophisticated, the relationships between AGB, spatial distribution, and growth stages still require further exploration. In this study, the Picea schrenkiana (Picea schrenkiana var. tianschanica) forest area in the Kashi River Basin of the Ili River Valley in the western Tianshan Mountains was selected as the research area. Based on forest resources inventory data, Gaofen-1 (GF-1), Gaofen-6 (GF-6), Gaofen-3 (GF-3) Polarimetric Synthetic Aperture Radar (PolSAR), and DEM data, we classified the Picea schrenkiana forests in the study area into three cases: the Whole Forest without vertical zonation and stand age, Vertical Zonality Classification without considering stand age, and Stand-Age Classification without considering vertical zonality. Then, for each case, we used eXtreme Gradient Boosting (XGBoost), Back Propagation Neural Network (BPNN), and Residual Networks (ResNet), respectively, to estimate the AGB of forests in the study area. The results show that: (1) The integration of multi-source remote-sensing data and the ResNet can effectively improve the remote-sensing estimation accuracy of the AGB of Picea schrenkiana. (2) Furthermore, classification by vertical zonality and stand ages can reduce the problems of low-value overestimation and high-value underestimation to a certain extent. Full article
(This article belongs to the Special Issue Modeling Aboveground Forest Biomass: New Developments)
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<p>Geographic location map of the study area. (<b>a</b>) Position of the study area within China. (<b>b</b>) Position of the study area within Xinjiang Province. (<b>c</b>) Elevation map of the study area, along with the forest sample locations.</p>
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<p>Topographic feature map of the study area. (<b>a</b>) altitude map of the study area. (<b>b</b>) vertical zonality division map of the study area. (<b>c</b>) slope division map of the study area. (<b>d</b>) aspect division map of the study area.</p>
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<p>Classification map of stand ages of <span class="html-italic">Picea schrenkiana</span> forests.</p>
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<p>The framework of the Back Propagation Neural Network model.</p>
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<p>The framework of the Residual Network model. k represents the convolution kernel, s represents the stride, and p represents the padding.</p>
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<p>The accuracy of each model using multi-source data in the case of vertical zonality.</p>
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<p>The accuracy of each model using multi-source data in the case of stand ages.</p>
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<p>Accuracy of each model using multi-source data in the case of whole forest.</p>
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<p>AGB estimation results under three different modeling methods. (<b>a</b>) shows the output map of estimated AGB for the whole forest. (<b>b</b>) based on the classification of vertical zonality, shows the output map of estimated AGB. (<b>c</b>) based on the classification of stand ages, shows the output map of estimated AGB.</p>
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<p>The comparison of AGB estimation results between this study and Yang’s study. (<b>a</b>) the results of this experimental study; (<b>b</b>) The results of Yang’s study.</p>
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15 pages, 4318 KiB  
Article
Novel Cold-Active Levansucrase (SacBPk) from Priestia koreensis HL12 for Short-Chain Fructooligosaccharides and Levan Synthesis
by Hataikarn Lekakarn, Natthamon Phusiri, Teeranart Komonmusik, Phuphiphat Jaikaew, Srisakul Trakarnpaiboon and Benjarat Bunterngsook
Catalysts 2025, 15(3), 216; https://doi.org/10.3390/catal15030216 - 25 Feb 2025
Viewed by 214
Abstract
Levansucrases are key enzymes responsible for the synthesis of β-2,6-linked fructans, found in plants and microbes, especially in bacteria. Levansucrases have been applied in the production of levan biopolymer and fructooligosaccharides (FOSs) using sucrose as a substrate as well as in reducing sugar [...] Read more.
Levansucrases are key enzymes responsible for the synthesis of β-2,6-linked fructans, found in plants and microbes, especially in bacteria. Levansucrases have been applied in the production of levan biopolymer and fructooligosaccharides (FOSs) using sucrose as a substrate as well as in reducing sugar levels in fruit juice. As a result, levansucrases that are active at low temperatures are required for industrial applications to maintain product stability. Therefore, this work firstly reports the novel cold-active levansucrase (SacBPk) isolated from a sucrolytic bacterial strain, P. koreensis HL12. The SacBPk was classified into glycoside hydrolase family 68 subfamily 1 (GH68_1) and comprised a single catalytic domain with the Asp104/Asp267/Glu362 catalytic triad. Interestingly, the recombinant SacBPk demonstrated cold-active levansucrase activity at low temperatures (on ice and 4–40 °C) with the highest specific activity (167.46 U/mg protein) observed at 35 and 40 °C in 50 mM sodium phosphate buffer pH 6.0. SacBPk mainly synthesized levan polymer as the major product (129 g/L, corresponding to 25.8% of total sugar) with a low number of short-chain FOSs (GF2–4) (12.8 g/L, equivalent to 2.5% of total sugar) from 500 g/L sucrose after incubating at 35 °C for 48 h. These results demonstrate the industrial application potential of SacBPk levansucrase for levan and FOSs production. Full article
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Graphical abstract

Graphical abstract
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<p>Evolutionary analysis of SacBPk levansucrase from <span class="html-italic">P. koreensis</span> HL12 comparing with the 18 homologs of GH32 and 12 homologs of GH68. The phylogenetic tree was constructed using the neighbor-joining method with 5000 replicates bootstrap test. Bar represents sequence divergence.</p>
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<p>Structural-based sequence alignment of SacBPk levansucrase from <span class="html-italic">P. koreensis</span> HL12 and previously biochemical characterized levansucrases classified as GH68_subfamily 1 and subfamily 2. GH68_subfamily 1 levansucrases are wild-type levansucrases from <span class="html-italic">B. megaterium</span> (3OM2), <span class="html-italic">B. amyloliquefaciens</span> (P21130), <span class="html-italic">B. licheniformis</span> (H6UZK4), and <span class="html-italic">Bacillus spizizenii</span> (E0U3I0). GH68_subfamily 2 levansucrases are levansucrases from <span class="html-italic">E. amylovora</span> (Q46654), <span class="html-italic">G. diazotrophicus</span> (Q43998), <span class="html-italic">A. naeslundii</span> (AAG09737), <span class="html-italic">L. mesenteroides</span> (AAT81165), and <span class="html-italic">Z. mobilis</span> (AAA27695). Highly conserved amino acid residues are shown in the blue box. Secondary structures indicated above are assigned according to the predicted model of SacBPk. The proposed catalytic triad residues Asp104/Asp267/Glu362 are indicated by red triangles, and the neighboring residues are indicated by black triangles. The OB1 and OB2 surface residues were indicated in green and orange color, respectively.</p>
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<p>The predicted three-dimensional model of SacBPk levansucrase from <span class="html-italic">P. koreensis</span> HL12. (<b>a</b>) Cartoon representation Sec signal peptide link with GH68 catalytic domain at the C-terminus. (<b>b</b>) The structure comparison between SacBPk (blue color) and experimental model levansucrase from <span class="html-italic">B. megaterium</span> (3OM2) (purple color). (<b>c</b>) The electrostatic structure represents the cleft of an active site on the protein surface. (<b>d</b>) The proposed key amino acid residues involving in the sucrose binding site of SacBPk.</p>
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<p>The SDS-PAGE analysis of recombinant SacBPk. (<b>a</b>) The expression of SacBPk comparing with pET28a(+) empty vector. The cell lysate of <span class="html-italic">E. coli</span> BL21(DE3) containing the empty vector and the recombinant pET28a(+) harboring <span class="html-italic">sacBPk</span> gene was analyzed on a 12% (<span class="html-italic">w</span>/<span class="html-italic">v</span>) acrylamide gel. UN represents an uninduced condition. IPTG indicates induction with 0.25 mM IPTG. (<b>b</b>) Purification of SacBPk using affinity chromatography.</p>
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<p>Effect of pH and temperature on the levansucrase activity of recombinant SacBPk. (<b>a</b>) Optimal pH analysis of SacBPk. The hydrolysis activity was analyzed toward sucrose at 35 °C for 10 min in 50 mM sodium acetate buffer pH 4.0–6.0, 50 mM sodium phosphate buffer pH 6.0–8.0, 50 mM Tris-HCl buffer pH 8.0–9.0, and 50 mM Glycine-NaOH buffer pH 9.0–10.0. (<b>b</b>) The optimal temperature analysis was performed by incubating the reaction on ice (0 °C) and different temperatures (4–80 °C) for 10 min in 50 mM sodium phosphate buffer pH 6.0. The experiment has been carried out with six replicates.</p>
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<p>The product profile analysis of FOSs and levan synthesis by recombinant SacBPk from <span class="html-italic">P. koreensis</span> HL12. (<b>a</b>) The qualitative product profile analyzed by TLC method. (<b>b</b>) The sugar profile and content analysis using the HPLC method. The sugar standards are glucose (Glc), fructose (Fru), sucrose (Suc), 1-Kestose (GF2), 1,1-Kestotetraose (GF3), and 1,1,1-Kestopentaose (GF4).</p>
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16 pages, 3967 KiB  
Article
Potato Disease and Pest Question Classification Based on Prompt Engineering and Gated Convolution
by Wentao Tang and Zelin Hu
Agriculture 2025, 15(5), 493; https://doi.org/10.3390/agriculture15050493 - 25 Feb 2025
Viewed by 162
Abstract
Currently, there is no publicly available dataset for the classification of potato pest and disease-related queries. Moreover, traditional query classification models generally adopt a single maximum-pooling strategy when performing down-sampling operations. This mechanism only extracts the extreme value responses within the local receptive [...] Read more.
Currently, there is no publicly available dataset for the classification of potato pest and disease-related queries. Moreover, traditional query classification models generally adopt a single maximum-pooling strategy when performing down-sampling operations. This mechanism only extracts the extreme value responses within the local receptive field, which leads to the degradation of fine-grained feature representation and significantly amplifies text noise. To address these issues, a dataset construction method based on prompt engineering is proposed, along with a question classification method utilizing a gated fusion–convolutional neural network (GF-CNN). By interacting with large language models, prompt words are used to generate potato disease and pest question templates and efficiently construct the Potato Pest and Disease Question Classification Dataset (PDPQCD) by batch importing named entities. The GF-CNN combines outputs from convolutional kernels of varying sizes, and after processing with max-pooling and average-pooling, a gating mechanism is employed to regulate the flow of information, thereby optimizing the text feature extraction process. Experiments using GF-CNN on the PDPQCD, Subj, and THUCNews datasets show F1 scores of 100.00%, 96.70%, and 93.55%, respectively, outperforming other models. The prompt engineering-based method provides a new paradigm for constructing question classification datasets, and the GF-CNN can also be extended for application in other domains. Full article
(This article belongs to the Special Issue Computational, AI and IT Solutions Helping Agriculture)
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<p>Prompt and model replies.</p>
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<p>Entity import algorithm logic.</p>
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<p>Data distribution.</p>
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<p>Model structure.</p>
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<p>GF-CNN model structure.</p>
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<p>Gating fusion unit.</p>
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<p>Confusion matrix.</p>
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<p>Performance comparison of different feature fusion.</p>
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