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17 pages, 3585 KiB  
Article
Immunological Responses, Expression of Immune-Related Genes, and Disease Resistance of Rainbow Trout (Oncorhynchus mykiss) Fed Diets Supplied with Capsicum (Capsicum annuum) Oleoresin
by Sevdan Yilmaz, Osman Nezih Kenanoğlu, Sebahattin Ergün, Ekrem Şanver Çelik, Mert Gürkan, Elsayed Eldeeb Mehana and Hany M. R. Abdel-Latif
Animals 2024, 14(23), 3402; https://doi.org/10.3390/ani14233402 (registering DOI) - 25 Nov 2024
Abstract
A 45-day feeding study was carried out to assess the immune-stimulatory effects of capsicum oleoresin when added to rainbow trout diets. A total of 450 fish (mean weight: 155.20 ± 1.96 g) were distributed into 400 L tanks (30 fish/tank) across five experimental [...] Read more.
A 45-day feeding study was carried out to assess the immune-stimulatory effects of capsicum oleoresin when added to rainbow trout diets. A total of 450 fish (mean weight: 155.20 ± 1.96 g) were distributed into 400 L tanks (30 fish/tank) across five experimental groups: control (CT, 0%), C7 (0.7%), C14 (1.4%), C21 (2.1%), and C28 (2.8%). Each group consisted of three replicate tanks. At the end of this period, hemato-biochemical parameters, innate immune responses, and immune-related gene expression levels were evaluated, and a histological examination of head kidney and liver sections was conducted. Finally, fish in all groups were challenged with Lactococcus garvieae and observed for an additional 20 days. The results revealed that oleoresin supplementation enhanced the immune responses of the treated fish, which was evidenced by the increased globulin, total protein, respiratory burst activity, and total immunoglobulin levels. The highest expression levels of the il-8, il-1β, TGF-β, and SAA genes was noticed in the C7 group, as compared with the results for the other groups. The IgT gene expression levels were higher in all experimental groups than in the CT group, and this increase was at the highest level in the C28 group. Following the bacterial challenge, all experimental groups displayed higher survival rates compared to that of the CT group. These values were 75.93, 72.22, 46.30, 33.33, and 29.63% in the C7, C14, C21, C28, and CT groups, respectively, with the C7 group displaying the highest survival rate among the groups. The histological examination of liver and head kidney tissues revealed that higher doses (in the C21 and C28 groups) showed an increase in cytoplasmic vacuolization, which causes adverse effects on fish health. However, the C7 group displayed normal histological structure in both tissues. Taken together, the most favorable immune responses were achieved in the C7 group, suggesting that 0.7% oleoresin could be applied to rainbow trout to boost immunity and protect the fish from diseases. Full article
(This article belongs to the Special Issue Enhancing Aquatic Animal Health Through Feed Additives)
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Figure 1

Figure 1
<p>A panel of the serum biochemical parameters including total protein (<b>A</b>), albumin (<b>B</b>), globulin (<b>C</b>), glucose (<b>D</b>), triglycerides (<b>E</b>), and total cholesterol (<b>F</b>) of rainbow trout fed diets supplied with different levels of capsicum oleoresin for 45 days. Values are presented as means ± S.D. (<span class="html-italic">n</span> = 9). The bars assigned with different letters denote statistically significant differences between the control (CT) and treated groups (<span class="html-italic">p</span> &lt; 0.05).</p>
Full article ">Figure 2
<p>A panel of liver function enzymes including AST (<b>A</b>), ALT (<b>B</b>), and ALP (<b>C</b>) enzymes of rainbow trout fed diets supplied with different levels of capsicum oleoresin for 45 days. Values are presented as means ± S.D. (<span class="html-italic">n</span> = 9). The bars assigned with different letters denote statistically significant differences between the control (CT) and treated groups (<span class="html-italic">p</span> &lt; 0.05).</p>
Full article ">Figure 3
<p>A panel of serum immune indices including RBA (<b>A</b>), lysozyme (<b>B</b>), MPO (<b>C</b>), and total immunoglobulin (<b>D</b>) of rainbow trout fed diets supplied with different levels of capsicum oleoresin for 45 days. Values are presented as means ± S.D. (<span class="html-italic">n</span> = 9). The bars assigned with different letters denote statistically significant differences between the control (CT) and treated groups (<span class="html-italic">p</span> &lt; 0.05).</p>
Full article ">Figure 3 Cont.
<p>A panel of serum immune indices including RBA (<b>A</b>), lysozyme (<b>B</b>), MPO (<b>C</b>), and total immunoglobulin (<b>D</b>) of rainbow trout fed diets supplied with different levels of capsicum oleoresin for 45 days. Values are presented as means ± S.D. (<span class="html-italic">n</span> = 9). The bars assigned with different letters denote statistically significant differences between the control (CT) and treated groups (<span class="html-italic">p</span> &lt; 0.05).</p>
Full article ">Figure 4
<p>Expression responses of immune-related genes including il-8 (<b>A</b>), <span class="html-italic">il-1β</span> (<b>B</b>), <span class="html-italic">TGF-β</span> (<b>C</b>), <span class="html-italic">SAA</span> (<b>D</b>), <span class="html-italic">IgT</span> (<b>E</b>), and <span class="html-italic">IFN-ɣ</span> (<b>F</b>) genes of rainbow trout fed diets supplied with different levels of capsicum oleoresin for 45 days. Values are presented as means ± S.D. (<span class="html-italic">n</span> = 9). The bars assigned with different letters denote statistically significant differences between the control (CT) and treated groups (<span class="html-italic">p</span> &lt; 0.05).</p>
Full article ">Figure 4 Cont.
<p>Expression responses of immune-related genes including il-8 (<b>A</b>), <span class="html-italic">il-1β</span> (<b>B</b>), <span class="html-italic">TGF-β</span> (<b>C</b>), <span class="html-italic">SAA</span> (<b>D</b>), <span class="html-italic">IgT</span> (<b>E</b>), and <span class="html-italic">IFN-ɣ</span> (<b>F</b>) genes of rainbow trout fed diets supplied with different levels of capsicum oleoresin for 45 days. Values are presented as means ± S.D. (<span class="html-italic">n</span> = 9). The bars assigned with different letters denote statistically significant differences between the control (CT) and treated groups (<span class="html-italic">p</span> &lt; 0.05).</p>
Full article ">Figure 5
<p>Photomicrographs of the head kidney sections of rainbow trout fed diets supplied with different levels of capsicum oleoresin for 45 days. (<b>a</b>) Control (CT), (<b>b</b>) C7, (<b>c</b>) C14, (<b>d</b>) C21, and (<b>e</b>) C28. Arrows show melanomacrophage aggregation. ×40 magnification; H&amp;E.</p>
Full article ">Figure 6
<p>Photomicrographs of the liver sections of rainbow trout fed diets supplied with different levels of capsicum oleoresin for 45 days. (<b>a</b>) Control (CT), (<b>b</b>) C7, (<b>c</b>) C14, (<b>d</b>) C21, and (<b>e</b>) C28 (S: sinusoid; H: hepatocyte; E: erythrocyte; CV: central vena; FC: fatty change; CVa: cytoplasmic vacuolization; PN: pyknotic nucleus). ×40 magnification; H &amp; E.</p>
Full article ">
18 pages, 1921 KiB  
Article
Tool Wear Prediction in Machining of Aluminum Matrix Composites with the Use of Machine Learning Models
by Adam Hamrol, Maciej Tabaszewski, Agnieszka Kujawińska and Jakub Czyżycki
Materials 2024, 17(23), 5783; https://doi.org/10.3390/ma17235783 (registering DOI) - 25 Nov 2024
Abstract
This paper discusses the diagnostic models of tool wear during face milling of Aluminum Matrix Composite (AMC), classified as a difficult-to-cut material. Prediction and classification models were considered. The models were based on one-dimensional simple regression or on multidimensional regression trees, random forest, [...] Read more.
This paper discusses the diagnostic models of tool wear during face milling of Aluminum Matrix Composite (AMC), classified as a difficult-to-cut material. Prediction and classification models were considered. The models were based on one-dimensional simple regression or on multidimensional regression trees, random forest, nearest neighbor and multilayer perceptron neural networks. Measures of diagnostic signals obtained from measurements of cutting forces and vibration accelerations of the workpiece were used. The study demonstrated that multidimensional models outperformed one-dimensional models in terms of prediction accuracy and classification performance. Specifically, multidimensional predictive models exhibited lower maximum and average absolute prediction errors (0.036 mm vs. 0.050 mm and 0.026 mm vs. 0.045 mm, respectively), and classification models recorded fewer Type I and Type II errors. Despite the increased complexity, the higher predictive accuracy (up to 0.97) achieved with multidimensional models was shown to be suitable for industrial applications. However, simpler one-dimensional models offered the ad-vantage of greater reliability in signal acquisition and processing. It was also highlighted that the advantage of simple models from a practical point of view is the reduced complexity and consequent greater reliability of the system for acquiring and processing diagnostic signals. Full article
17 pages, 1327 KiB  
Article
The Role of Medium Polarity in the Efficiency of Albumin Binding with Hydrophobic Ligands: Experimental Studies and a Molecular Dynamics Investigation
by Gabriel Zazeri, Ana Paula Ribeiro Povinelli, Luiza de Carvalho Bertozo, Alan M. Jones and Valdecir Farias Ximenes
Int. J. Mol. Sci. 2024, 25(23), 12664; https://doi.org/10.3390/ijms252312664 (registering DOI) - 25 Nov 2024
Abstract
This study evaluates how the polarity of the medium affects the binding efficiency of hydrophobic ligands with human serum albumin (HSA). The polarity of the aqueous medium was changed by adding 1,4-dioxane in concentrations of 0%, 10%, and 20% w/w, [...] Read more.
This study evaluates how the polarity of the medium affects the binding efficiency of hydrophobic ligands with human serum albumin (HSA). The polarity of the aqueous medium was changed by adding 1,4-dioxane in concentrations of 0%, 10%, and 20% w/w, resulting in solvent mixtures with decreasing dielectric constants (ε = 80, 72, and 63). The addition of 1,4-dioxane did not affect the integrity of the protein, as confirmed by Far-UV-CD, Rayleigh scattering, and time-resolved fluorescence experiments. The impact of medium polarity on the binding constants was evaluated using 1,6-diphenyl-1,3,5-hexatriene (DPH), octyl gallate (OG), quercetin, and rutin as ligands. The association constants of DPH decreased as the medium hydrophobicity increased: at 0%, Ka = 19.8 × 105 M−1; at 10%, Ka = 5.3 × 105 M−1; and at 20%, Ka = 1.7 × 105 M−1. The decrease was still higher using OG: at 0%, Ka = 5.2 × 106 M−1; and at 20%, Ka = 2.2 × 105 M−1. The results in the same direction were obtained using quercetin and rutin as ligands. Molecular dynamics simulations illustrated the hydrophobic effect at the molecular level. The energy barrier for DPH to detach from the protein’s hydrophobic site and to move into the bulk solution was higher at 0% (9 kcal/mol) than at 20% 1,4-dioxane (7 kcal/mol). The difference was higher for OG, with 14 and 6 kcal/mol, respectively. Based on these findings, it was shown that the difference in hydrophobicity between the protein’s microenvironment and the surrounding solvent is an essential component for the effectiveness of the interaction. These results shed light on albumin–ligand complexation, a molecular interaction that has been extensively studied. Full article
(This article belongs to the Section Molecular Biophysics)
20 pages, 2083 KiB  
Article
Toward Sustainable 3D-Printed Sensor: Green Fabrication of CNT-Enhanced PLA Nanocomposite via Solution Casting
by Javid Sharifi, Ghaus Rizvi and Haniyeh (Ramona) Fayazfar
Materials 2024, 17(23), 5782; https://doi.org/10.3390/ma17235782 (registering DOI) - 25 Nov 2024
Abstract
The current study explores, for the first time, an eco-friendly solution casting method using a green solvent, ethyl acetate, to prepare feedstock/filaments from polylactic acid (PLA) biopolymer reinforced with carbon nanotubes (CNTs), followed by 3D printing and surface activation for biosensing applications. Comprehensive [...] Read more.
The current study explores, for the first time, an eco-friendly solution casting method using a green solvent, ethyl acetate, to prepare feedstock/filaments from polylactic acid (PLA) biopolymer reinforced with carbon nanotubes (CNTs), followed by 3D printing and surface activation for biosensing applications. Comprehensive measurements of thermal, electrical, rheological, microstructural, and mechanical properties of developed feedstock and 3D-printed parts were performed and analyzed. Herein, adding 2 wt.% CNTs to the PLA matrix marked the electrical percolation, achieving conductivity of 8.3 × 10−3 S.m−1, thanks to the uniform distribution of CNTs within the PLA matrix facilitated by the solution casting method. Rheological assessments paralleled these findings; the addition of 2 wt.% CNTs transitioned the nanocomposite from liquid-like to a solid-like behavior with a percolated network structure, significantly elevating rheological properties compared to the composite with 1 wt.% CNTs. Mechanical evaluations of the printed samples revealed improvement in tensile strength and modulus compared to virgin PLA by a uniform distribution of 2 wt.% CNTs into PLA, with an increase of 14.5% and 10.3%, respectively. To further enhance the electrical conductivity and sensing capabilities of the developed samples, an electrochemical surface activation treatment was applied to as-printed nanocomposite samples. The field-emission scanning electron microscopy (FE-SEM) analysis confirmed that this surface activation effectively exposed the CNTs to the surface of 3D-printed parts by removing a thin layer of polymer from the surface, thereby optimizing the composite’s electroconductivity performance. The findings of this study underscore the potential of the proposed eco-friendly method in developing advanced 3D-printed bio-nanocomposites based on carbon nanotubes and biopolymers, using a green solution casting and cost-effective material extrusion 3D-printing method, for electrochemical-sensing applications. Full article
9 pages, 1203 KiB  
Article
The Effect of TiC–TiB2 Dual-Phase Nanoparticles on the Microstructure and Mechanical Properties of Cast Ni–Fe-Based Superalloys
by Guanlan Liu, Shengwei Sun, Yaoyun Hu and Qinglong Zhao
Materials 2024, 17(23), 5781; https://doi.org/10.3390/ma17235781 (registering DOI) - 25 Nov 2024
Abstract
TiC–TiB2 dual-phase nanoparticles were added into a Ni–Fe-based cast superalloy and their effects on the microstructure and mechanical properties were compared to those of a Ni–Fe-based superalloy with the addition of TiC nanoparticles. The addition of TiC nanoparticles led to the precipitation [...] Read more.
TiC–TiB2 dual-phase nanoparticles were added into a Ni–Fe-based cast superalloy and their effects on the microstructure and mechanical properties were compared to those of a Ni–Fe-based superalloy with the addition of TiC nanoparticles. The addition of TiC nanoparticles led to the precipitation of a higher volume fraction of carbides. Compared to the addition of TiC, the addition of TiC–TiB2 nanoparticles not only led to the precipitation of carbides but also promoted the formation of flaky borides and a reduction in the precipitation of the Laves phase. The strengthening effect of TiC–TiB2 nanoparticles on the mechanical properties of Ni–Fe-based superalloys was stronger than that of TiC nanoparticles due to more secondary γ’ precipitates. This study provides valuable insights for selecting ceramic nanoparticles to increase the mechanical properties of cast Ni–Fe-based superalloys. Full article
(This article belongs to the Special Issue Mechanical Properties and Structure Control of Superalloys)
20 pages, 7361 KiB  
Article
An Optimization Method for Design Solutions to Active Reflective Surface Control Systems Based on Axiomatic Design and Multi-Criteria Decision Making
by Qinghai Zhang, Xiaoqian Zhang, Qingjian Zhao, Shuang Zhao, Yanan Zhao, Yang Guo and Zhengxu Zhao
Electronics 2024, 13(23), 4655; https://doi.org/10.3390/electronics13234655 - 25 Nov 2024
Abstract
The design of an Active Reflective Surface Control System (ARCS) is a complex engineering task involving multidimensional and multi-criteria constraints. This paper proposes a novel methodological approach for ARCS design and optimization by integrating Axiomatic Design (AD) and Multi-Criteria Decision Making (MCDM) techniques. [...] Read more.
The design of an Active Reflective Surface Control System (ARCS) is a complex engineering task involving multidimensional and multi-criteria constraints. This paper proposes a novel methodological approach for ARCS design and optimization by integrating Axiomatic Design (AD) and Multi-Criteria Decision Making (MCDM) techniques. Initially, a structured design plan is formulated within the axiomatic design framework. Subsequently, four MCDM methods—Technique for Order Preference by Similarity to Ideal Solution (TOPSIS), Entropy Weight Method (EWM), Multi-Criteria Optimization and Compromise Solution (VIKOR), and the integrated TOPSIS–Grey Relational Analysis (GRA) approach—are used to evaluate and compare the alternative solutions. Additionally, fuzzy information axioms are used to calculate the total information content for each alternative to identify the optimal design. A case study is conducted, selecting the optimal actuator for a 5 m diameter scaled model of the Five-hundred-meter Aperture Spherical radio Telescope (FAST), followed by digital control experiments on the chosen actuator. Based on the optimal design scheme, an ARCS prototype is constructed, which accelerates project completion and substantially reduces trial-and-error costs. Full article
25 pages, 3236 KiB  
Article
Spatiotemporal Evolution and Influencing Factors of Urban Construction Land in Resource-Exhausted Cities: An Empirical Study of Puyang, China
by Xiaodan Li, Gangqiang Zhu and Zhen Liu
Land 2024, 13(12), 2007; https://doi.org/10.3390/land13122007 - 25 Nov 2024
Abstract
Resource-depleted cities face challenges of land structure imbalance and ecological environmental degradation, necessitating relevant research. Clarifying the land use evolution path and exploring the rationality of urban expansion are of significant importance for the sustainable development of resource-depleted cities. This study employs a [...] Read more.
Resource-depleted cities face challenges of land structure imbalance and ecological environmental degradation, necessitating relevant research. Clarifying the land use evolution path and exploring the rationality of urban expansion are of significant importance for the sustainable development of resource-depleted cities. This study employs a comprehensive approach utilizing the land use transfer matrix, expansion intensity, expansion speed, and the equal fan analysis method to investigate the evolution characteristics of construction land in Puyang, a typical resource-exhausted city in China, from 1990 to 2020. Additionally, it identifies the driving factors based on a comprehensive approach combining the variance inflation factor (VIF), grey relational analysis, and Pearson correlation analysis. The main findings include the following: (1) From 1990 to 2020, the cultivated land area in Puyang decreased by 181,296 hectares, while the newly added construction land amounted to 24,846.30 hectares, primarily converted from cultivated land. (2) Puyang comprises five counties and one district. Among them, Hualong District exhibited the highest expansion intensity, speed, and area, whereas Taiqian County showed the lowest. This disparity is attributed to resource-centered land development and utilization. (3) From 1990 to 2020, urban expansion in Puyang primarily concentrated in the northeast direction, exhibiting a concentric outward expansion pattern. (4) Socioeconomic factors positively influenced the expansion of construction land, with the “year-end total population” having the most significant impact. Conversely, land use and natural resource factors negatively impacted construction land expansion, with “cultivated land area” being the most prominent. Additionally, policy and institutional frameworks played a regulatory and restrictive role in the evolution of construction land, while topography and location served as fundamental conditions for urban expansion. This study provides methodologies for sustainable development research in resource-exhausted cities and offers a foundation for land use planning research in resource-based regions of China. Full article
(This article belongs to the Section Land Planning and Landscape Architecture)
19 pages, 1146 KiB  
Article
Construction of A Dataset for All Expressed Transcripts for Alzheimer’s Disease Research
by Zhenyu Huang, Bocheng Shi, Xuechen Mu, Siyu Qiao, Gangyi Xiao, Yan Wang and Ying Xu
Brain Sci. 2024, 14(12), 1180; https://doi.org/10.3390/brainsci14121180 - 25 Nov 2024
Abstract
Accurate identification and functional annotation of splicing isoforms and non-coding RNAs (lncRNAs), alongside full-length protein-encoding transcripts, are critical for understanding gene (mis)regulation and metabolic reprogramming in Alzheimer’s disease (AD). This study aims to provide a comprehensive and accurate transcriptome resource to improve existing [...] Read more.
Accurate identification and functional annotation of splicing isoforms and non-coding RNAs (lncRNAs), alongside full-length protein-encoding transcripts, are critical for understanding gene (mis)regulation and metabolic reprogramming in Alzheimer’s disease (AD). This study aims to provide a comprehensive and accurate transcriptome resource to improve existing AD transcript databases. Background/Objectives: Gene mis-regulation and metabolic reprogramming play a key role in AD, yet existing transcript databases lack accurate and comprehensive identification of splicing isoforms and lncRNAs. This study aims to generate a refined transcriptome dataset, expanding the understanding of AD onset and progression. Methods: Publicly available RNA-seq data from pre-AD and AD tissues were utilized. Advanced bioinformatics tools were applied to assemble and annotate full-length transcripts, including splicing isoforms and lncRNAs, with an emphasis on correcting errors and enhancing annotation accuracy. Results: A significantly improved transcriptome dataset was generated, which includes detailed annotations of splicing isoforms and lncRNAs. This dataset expands the scope of existing AD transcript databases and provides new insights into the molecular mechanisms underlying AD. The findings demonstrate that the refined dataset captures more relevant details about AD progression compared to publicly available data. Conclusions: The newly developed transcriptome resource and the associated analysis tools offer a valuable contribution to AD research, providing deeper insights into the disease's molecular mechanisms. This work supports future research into gene regulation and metabolic reprogramming in AD and serves as a foundation for exploring novel therapeutic targets. Full article
15 pages, 1266 KiB  
Review
Technology Innovation for Discovering Renal Autoantibodies in Autoimmune Conditions
by Maurizio Bruschi, Giovanni Candiano, Andrea Petretto, Andrea Angeletti, Pier Luigi Meroni, Marco Prunotto and Gian Marco Ghiggeri
Int. J. Mol. Sci. 2024, 25(23), 12659; https://doi.org/10.3390/ijms252312659 - 25 Nov 2024
Abstract
Autoimmune glomerulonephritis is a homogeneous area of renal pathology with clinical relevance in terms of its numerical impact and difficulties in its treatment. Systemic lupus erythematosus/lupus nephritis and membranous nephropathy are the two most frequent autoimmune conditions with clinical relevance. They are characterized [...] Read more.
Autoimmune glomerulonephritis is a homogeneous area of renal pathology with clinical relevance in terms of its numerical impact and difficulties in its treatment. Systemic lupus erythematosus/lupus nephritis and membranous nephropathy are the two most frequent autoimmune conditions with clinical relevance. They are characterized by glomerular deposition of circulating autoantibodies that recognize glomerular antigens. Technologies for studying renal tissue and circulating antibodies have evolved over the years and have culminated with the direct analysis of antigen–antibody complexes in renal bioptic fragments. Initial studies utilized renal microdissection to obtain glomerular tissue. Obtaining immunoprecipitates after partial proteolysis of renal tissue is a recent evolution that eliminates the need for tissue microdissection. New technologies based on ‘super-resolution microscopy’ have added the possibility of a direct analysis of the interaction between circulating autoantibodies and their target antigens in glomeruli. Peptide and protein arrays represent the new frontier for identifying new autoantibodies in circulation. Peptide arrays consist of 7.5 million aligned peptides with 16 amino acids each, which cover the whole human proteome; protein arrays utilize, instead, a chip containing structured proteins, with 26.000 overall. An example of the application of the peptide array is the discovery in membranous nephropathy of many new circulating autoantibodies including formin-like-1, a protein of podosomes that is implicated in macrophage movements. Studies that utilize protein arrays are now in progress and will soon be published. The contribution of new technologies is expected to be relevant for extending our knowledge of the mechanisms involved in the pathogenesis of several autoimmune conditions. They may also add significant tools in clinical settings and modify the therapeutic handling of conditions that are not considered to be autoimmune. Full article
Show Figures

Figure 1

Figure 1
<p>Workflow utilized for characterizing glomerular antibodies microeluted from the kidney. Glomerular microdissection is the first step: (<b>a</b>,<b>b</b>) show a renal bioptic sample before and after microdissection, and (<b>c</b>) shows the glomerulus derived from the procedure. Glomerular extracts are then incubated with podocyte proteins previously separated by 2D electrophoresis and transferred to nitrocellulose membranes. Those spots that are recognized by immunoglobulin glomerular extracts undergo characterization by mass spectrometry.</p>
Full article ">Figure 2
<p>Validation of antibodies microeluted from glomeruli and characterized by immunoblot and mass spectrometry is carried out by immunofluorescence on kidney biopsies. The example presented in this figure is the validation of alpha-enolase as an antigen in patients with lupus nephritis. In this case, alpha-enolase, stained in red, and IgG2, stained in green, have an intense yellow merge, which indicates that the two proteins interact in the tissue. Magnification: ×400.</p>
Full article ">Figure 3
<p>Whole proteome peptide arrays consist of 7,499,126 peptides with 16 amino acids each that together cover the amino acid sequence of all the proteins coded by the human genome. Sera are incubated with all 7,499,126 peptides of the customized array, and the intensity of the relative fluorescence deriving from their interaction is aligned in sequence by informatic technologies to obtain the identification of a unique linear epitope corresponding to a specific protein. This figure shows the application of the peptide arrays for discovering new circulating antibodies in patients with membranous nephropathy, which is a unique example of the application of the array in human pathology [<a href="#B17-ijms-25-12659" class="html-bibr">17</a>].</p>
Full article ">
13 pages, 820 KiB  
Article
Sediment TIE Validation Study Using South Korean Domestic Species Glyptotendipes tokunagai to Evaluate Contamination with Two Heavy Metals and Ammonia
by Yeo-Jin Bang, Rahul Singh, Da-Hyeon Hwang, Jae-Min Lee, Ihn-Sil Kwak, Jae-Won Park and Tae-Yong Jeong
Sustainability 2024, 16(23), 10318; https://doi.org/10.3390/su162310318 - 25 Nov 2024
Abstract
Toxicity identification evaluation (TIE) is used to support sustainable soil management. However, TIE studies for sediment contamination have been limited and no previous study has validated its applicability to a species native to South Korea, to the best of our knowledge. Therefore, this [...] Read more.
Toxicity identification evaluation (TIE) is used to support sustainable soil management. However, TIE studies for sediment contamination have been limited and no previous study has validated its applicability to a species native to South Korea, to the best of our knowledge. Therefore, this study aims to validate the applicability of domestic species inhabiting East Asia to a TIE framework. We selected Glyptotendipes tokunagai, a common benthic invertebrate in urban areas. Contaminated sediment samples were generated using cadmium, copper, and ammonia, which are the major pollutants in sediment. Three different adsorbents were chosen as pollutant removal agents to validate the applicability of TIE using G. tokunagai. In the results, G. tokunagai exhibited a mortality rate that was dependent on the concentration of each pollutant. The mortality rate dramatically decreased after adding the chosen adsorbents to the contaminated sediments. Additionally, the observed reduction in toxicant concentrations suggests that these additives are efficient for toxicant removal. In contrast, WCA10L showed a mortality higher than 20% and seems not to be a proper additive for a toxicity assay. Through this study, G. tokunagai was demonstrated to be sufficiently sensitive to sediment contaminated with different pollutants and showed reproducible measurements, making it a suitable test organism for the TIE framework. Moreover, suitable adsorbents were suggested by measuring efficiency and toxicity after the toxicant removal procedure. Full article
17 pages, 2816 KiB  
Article
Exploring the Impact of Semaglutide on Cognitive Function and Anxiety-Related Behaviors in a Murine Model of Alzheimer’s Disease
by Ianis Kevyn Stefan Boboc, Petrica-Daniel Dumitrelea, Andreea Daniela Meca, Liliana Mititelu-Tartau and Maria Bogdan
Biomedicines 2024, 12(12), 2689; https://doi.org/10.3390/biomedicines12122689 - 25 Nov 2024
Abstract
Background: Alzheimer’s disease (AD), the most prevalent form of dementia, is characterized by progressive cognitive decline and behavioral disturbances, with an increasing incidence as the global population ages. This study investigates the effects of semaglutide (SEM), a glucagon-like peptide-1 analog, on cognitive function [...] Read more.
Background: Alzheimer’s disease (AD), the most prevalent form of dementia, is characterized by progressive cognitive decline and behavioral disturbances, with an increasing incidence as the global population ages. This study investigates the effects of semaglutide (SEM), a glucagon-like peptide-1 analog, on cognitive function and anxiety-like behavior in a transgenic murine model of AD. Methods: 20 mice were randomly distributed into the following groups (n = 5): (WT + VEH) group: C57BL/6J + saline, (WT + SEM) group: C57BL/6J + semaglutide, (AD + VEH) group: AD + saline, (AD + SEM) group: AD + semaglutide. The animals underwent a four-week treatment, during which we monitored blood glucose levels, body weight, and responses in an open field test, novel object recognition test, social chamber test, and 0-maze test. Results: Post-treatment, SEM significantly reduced blood glucose levels in AD mice, aligning them with those of wild-type controls. Cognitive assessments indicated an improvement in the investigation index for SEM-treated mice compared to those receiving a vehicle, suggesting cognitive benefits. Although SEM did not significantly enhance motor and exploratory activities, it displayed a potential anxiolytic effect, particularly evident in the combined anxiety index, with notable differences observed before and after treatment in the AD group. Conclusions: The findings of this pilot study suggest that SEM may play a dual role in managing AD by improving glycemic control and potentially enhancing cognitive function. As the landscape of AD treatment evolves, the comprehensive approach of utilizing SEM could pave the way for innovative interventions targeting the complex interplay of metabolic and cognitive dysfunctions in this challenging neurodegenerative disorder. Full article
22 pages, 6416 KiB  
Article
Assessing Compound Coastal–Fluvial Flood Impacts and Resilience Under Extreme Scenarios in Demak, Indonesia
by Asrini Chrysanti, Ariz Adhani, Ismail Naufal Azkiarizqi, Mohammad Bagus Adityawan, Muhammad Syahril Badri Kusuma and Muhammad Cahyono
Sustainability 2024, 16(23), 10315; https://doi.org/10.3390/su162310315 - 25 Nov 2024
Abstract
Demak is highly vulnerable to flooding from both fluvial and coastal storms, facing increasing pressures on its sustainability and resilience due to multiple compounding flood hazards. This study assesses the inundation hazards in Demak coastal areas by modeling the impacts of compound flooding. [...] Read more.
Demak is highly vulnerable to flooding from both fluvial and coastal storms, facing increasing pressures on its sustainability and resilience due to multiple compounding flood hazards. This study assesses the inundation hazards in Demak coastal areas by modeling the impacts of compound flooding. We modeled eight scenarios incorporating long-term forces, such as sea level rise (SLR) and land subsidence (LS), as well as immediate forces, like storm surges, wind waves, and river discharge. Our findings reveal that immediate forces primarily increase inundation depth, while long-term forces expand the inundation area. Combined effects from storm tides and other factors resulted in a 10–20% increase in flood extent compared to individual forces. Fluvial flooding mostly impacts areas near river outlets, but the combination of river discharge and storm tides produces flood extents similar to those caused by SLR. Land subsidence emerged as the primary driver of coastal flooding, while other factors, adding just 25% to area increase, significantly impacted inundation depth. These findings underscore the effectiveness of mangroves in mitigating floods in low-lying areas against immediate forces. However, the resilience and sustainability of the Demak region are challenged by SLR, LS, and the need to integrate these factors into a comprehensive flood mitigation strategy. Full article
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<p>The location of the study area. The green line indicates four sub-districts in the Demak Regency. The white square indicates the location of the study area in Java Island.</p>
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<p>(<b>a</b>) Skew surge profile of selected storm events. The data are collected from the Semarang tidal monitoring station. The water level residuals are extracted from the observed water level and astronomical tide prediction. Observed water level and predicted storm events on (<b>b</b>) 1 December 2017; (<b>c</b>) 23 May 2018; (<b>d</b>) 7 April 2020; and (<b>e</b>) 3 June 2020.</p>
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<p>Return periods for (<b>a</b>) significant wave height and (<b>b</b>) wave period.</p>
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<p>(<b>a</b>) Watersheds of rivers that flow into the Demak Delta. Main river discharge: (<b>b</b>) 50-year return-period flood discharge; (<b>c</b>) flow duration curve (FDC) calibration of the Sacramento model and observation of Buyaran River discharge.</p>
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<p>Model domain: (<b>a</b>) the first model domain covers the area from Kendal City to Jepara City. Storm wave and high tidal forcing boundary conditions are used in this domain. (<b>b</b>) The second model domain covers a smaller area of Semarang City and some parts of southeastern Jepara City. No additional forcing was added to this domain. The smallest grid with the highest resolution was implemented in our area of interest: Demak Regency.</p>
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<p>Flowchart for the scenario simulated for the future projection of flood hazards. The gray background color indicates different forcings implemented in this study.</p>
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<p>(<b>a</b>) Skew surge abstracted at an extreme storm event (1 December 2017); (<b>b</b>) boundary condition for high-water spring and wind wave (blue); storm tides in the SH-WS scenario (orange); storm tides with SLR for the SS-SLR scenario (green).</p>
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<p>Maximum inundation depth values for the following scenarios: (<b>a</b>) baseline scenario; (<b>b</b>) storm tide scenario (SH-WS); (<b>c</b>) high-water spring and sea level rise scenario (SH-SLR); (<b>d</b>) high-water spring and land subsidence scenario (SH-LS). The inundation depth changes for all scenarios can be seen in <a href="#app1-sustainability-16-10315" class="html-app">Figure S4</a>. The red triangle in <a href="#sustainability-16-10315-f008" class="html-fig">Figure 8</a>a indicates the Wulan River outlet and the yellow line indicates sub-district region.</p>
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<p>Maximum inundation increases based on the baseline (HWS scenario): (<b>a</b>–<b>d</b>) single forcing scenarios; (<b>e</b>–<b>h</b>) compound scenarios under the storm tide condition. A visualization map of inundation depth increases can be seen in <a href="#app1-sustainability-16-10315" class="html-app">Figure S4</a>.</p>
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<p>(<b>a</b>) Water depth distribution during flooding period, data collected for the Bonang region, and (<b>b</b>) maximum inundation depth distribution for all simulated scenarios.</p>
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<p>Maximum inundation depth for compound scenarios: (<b>a</b>) storm tide and river discharge (SS-DR); (<b>b</b>) storm tide and sea level rise scenario (SS-SLR); (<b>c</b>) storm tide and land subsidence scenario (SS-LS); (<b>d</b>) worst-case (WC) scenario. Yellow line indicates sub-district region.</p>
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<p>Inundation depth distribution for all simulated scenarios.</p>
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<p>Flooding extent at higher topographical elevations (above MSL): (<b>a</b>) HWS (828.01 Ha inundated); (<b>b</b>) storm tide (1525.26 Ha inundated) (<b>c</b>) worst-case scenario (6315.31 Ha inundated). The yellow line indicates sub-district region.</p>
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13 pages, 693 KiB  
Article
Valorising Transnational Heritage Through Cultural Routes—European Travels in Special Collections of Adriatic Libraries
by Nataša Urošević, Ross Cameron and Damjana Frančić
Soc. Sci. 2024, 13(12), 632; https://doi.org/10.3390/socsci13120632 - 25 Nov 2024
Abstract
In this paper, the authors present the possibilities of transnational networking and developing innovative cultural routes through participatory research and creative presentations of European cultural heritage in special collections of Adriatic libraries. The purpose of the research, conducted in the framework of the [...] Read more.
In this paper, the authors present the possibilities of transnational networking and developing innovative cultural routes through participatory research and creative presentations of European cultural heritage in special collections of Adriatic libraries. The purpose of the research, conducted in the framework of the course Travel Writing and Cultural Routes, was to identify collections that contain travel writing material related to the broader Euro-Mediterranean area and to enable its better visibility through the digitization and creation of new European cultural routes. The students, with the help of librarians at the University Library in Pula, explored special collections, such as the Marine Library, and proposed the creation of new cultural routes, following the itineraries of European travel writers in the Adriatic. The conducted research indicated collections and materials in heritage institutions (archives, libraries and museums) in Pula and Istria relevant to the topics of cultural routes and travel in Europe, as well as regional multicultural history. Libraries in Istria and Dalmatia have valuable collections of rare archival material related to European travels to the Adriatic. The cataloguing and digitisation of rare travel texts has the potential to raise awareness of these collections, adding to their significance for academic research and heritage-based tourism. Full article
21 pages, 4501 KiB  
Article
A Deep Learning-Based Method for Bearing Fault Diagnosis with Few-Shot Learning
by Yang Li, Xiaojiao Gu and Yonghe Wei
Sensors 2024, 24(23), 7516; https://doi.org/10.3390/s24237516 - 25 Nov 2024
Abstract
To tackle the issue of limited sample data in small sample fault diagnosis for rolling bearings using deep learning, we propose a fault diagnosis method that integrates a KANs-CNN network. Initially, the raw vibration signals are converted into two-dimensional time-frequency images via a [...] Read more.
To tackle the issue of limited sample data in small sample fault diagnosis for rolling bearings using deep learning, we propose a fault diagnosis method that integrates a KANs-CNN network. Initially, the raw vibration signals are converted into two-dimensional time-frequency images via a continuous wavelet transform. Next, Using CNN combined with KANs for feature extraction, the nonlinear activation of KANs helps extract deep and complex features from the data. After the output of CNN-KANs, an FAN network module is added. The FAN module can employ various feature aggregation strategies, such as weighted averaging, max pooling, addition aggregation, etc., to combine information from multiple feature levels. To further tackle the small sample issue, data generation is performed on the original data through diffusion networks under conditions of fewer samples for bearings and tools, thereby increasing the sample size of the dataset and enhancing fault diagnosis accuracy. Experimental results demonstrate that, under small sample conditions, this method achieves higher accuracy compared to other approaches. Full article
(This article belongs to the Section Fault Diagnosis & Sensors)
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<p>Methodology of the proposed research work.</p>
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<p>The detailed differences between MLP and KAN.</p>
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<p>A schematic representation of a spline curve.</p>
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<p>Spline interpolation, showcasing different orders of spline interpolation. (<b>a</b>) for cubic interpolation, (<b>b</b>) for 7th-order interpolation, (<b>c</b>) for 5th-order interpolation, and (<b>d</b>) for linear spline.</p>
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<p>The noise addition process in the diffusion network (displayed every 20 steps).</p>
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<p>The structure of the KANs-CNN network.</p>
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<p>The fault diagnosis flowchart.</p>
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<p>Time-frequency diagram of the bearing after wavelet transform.</p>
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<p>Loss Function, Accuracy, and Confusion Matrix of the KANs-CNN Experiment on the Augmented Bearing Dataset Using DDPM.</p>
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<p>Comparison of time-frequency maps of the bearing dataset before and after using the diffusion network.</p>
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<p>In comparative experiments with other methods, KANs-CNN achieved the highest performance in terms of average accuracy.</p>
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<p>Comparison of confusion matrices for fault diagnosis accuracy among the DDPM, GAN, and VAE generative models.</p>
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<p>Time-frequency maps of the tool after wavelet transformation.</p>
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<p>Comparison of confusion matrices for fault diagnosis accuracy among the DDPM, GAN, and VAE generative models.</p>
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16 pages, 8996 KiB  
Article
Preharvest Applications Improve the Postharvest Storage and Quality of Tomato Fruits by Enhancing the Nutritional Value and Antioxidant System
by Adel M. Al-Saif, Mohamed E. M. Ahmed, Mohamed A. Taha, Ashutosh Sharma, Abdel-Nasser A. El-Sheshtawy, Ibrahim A. Abouelsaad, Rasha S. El-Serafy and Rehab M. Mahdy
Horticulturae 2024, 10(12), 1248; https://doi.org/10.3390/horticulturae10121248 - 25 Nov 2024
Abstract
Tomato fruit’s quality, firmness, and resistance to hard postharvest handling and storage conditions can be raised via different preharvest applications, including fertilization. This study aimed to study the impact of preharvest field humic acid (HA), fulvic acid (FA), and salicylic acid (SA) treatments [...] Read more.
Tomato fruit’s quality, firmness, and resistance to hard postharvest handling and storage conditions can be raised via different preharvest applications, including fertilization. This study aimed to study the impact of preharvest field humic acid (HA), fulvic acid (FA), and salicylic acid (SA) treatments on the postharvest quality of tomato fruits. The experiment was arranged in a randomized complete block design in five treatments as follows: 20 mL L−1 HA plus 2 g L−1 FA (T1), 20 mL L−1 HA plus 0.5 g L−1 SA (T2), 40 mL L−1 HA plus 2 g L−1 FA (T3), 40 mL L−1 HA plus 0.5 g L−1 SA (T4), and untreated plants (T5). HA was added as a soil supplementation, while FA and SA were applied as a foliar application. Tomato fruits were collected at the beaker stage and maintained at 12 °C and 95% relative humidity for the postharvest storage period. The results obtained revealed that all physicochemical traits were significantly influenced by all treatments applied when comparing with the control fruit. The firmness of tomato fruits was better retained with the HA plus FA treatments than HA plus SA. T3 treatment improved the carotenoids and total soluble solids by 10.0% and 92.0%, respectively, relative to the control fruits. By the end of the storage period, the highest reducing sugar, ascorbic acid, and pectin content was exhibited by tomatoes subjected to T3 treatment followed by T1 and T4. Preharvest treatment enhanced antioxidant content enzymes of α-amylase, catalase (CAT), and peroxidase (POX) enzymes in tomato fruit during the storage period. Moreover, the T3 treatment recorded the lowest weight loss percentage (5.9%) by the end of storage period. The results revealed that combining preharvest HA and FA treatments effectively maintains the quality and shelf life of tomato fruits. Full article
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<p>Chlorophyll a (<b>a</b>), chlorophyll b (<b>b</b>), total chlorophyll (<b>c</b>), and carotenoids (<b>d</b>) content of tomato fruits on 0, 7, 14, and 21 days of the storage period in response to preharvest humic acid, fulvic acid, and salicylic acid. Bars with the same letters are not significantly differed at <span class="html-italic">p</span> ≤ 0.05 level. T1: 20 mL L<sup>−1</sup> HA plus 2 g L<sup>−1</sup> FA, T2: 20 mL L<sup>−1</sup> HA plus 0.5 g L<sup>−1</sup> SA, T3: 40 mL L<sup>−1</sup> HA plus 2 g L<sup>−1</sup> FA, T4: 40 mL L<sup>−1</sup> HA plus 0.5 g L<sup>−1</sup> SA, and T5: untreated plants. Mean values sharing the same lower-case letter in the same column do not differ significantly at <span class="html-italic">p</span> ≤ 0.05 by Duncan test.</p>
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<p>Fruit firmness (<b>a</b>) and TSS (<b>b</b>) of tomato fruits on 0, 7, 14, and 21 days of storage in response to preharvest humic acid, fulvic acid, and salicylic acid. Bars with the same letters are not significantly differed at <span class="html-italic">p</span> ≤ 0.05 level. T1: 20 mL L<sup>−1</sup> HA plus 2 g L<sup>−1</sup> FA, T2: 20 mL L<sup>−1</sup> HA plus 0.5 g L<sup>−1</sup> SA, T3: 40 mL L<sup>−1</sup> HA plus 2 g L<sup>−1</sup> FA, T4: 40 mL L<sup>−1</sup> HA plus 0.5 g L<sup>−1</sup> SA, and T5: untreated plants. Mean values sharing the same lower-case letter in the same column do not differ significantly at <span class="html-italic">p</span> ≤ 0.05 by Duncan test.</p>
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<p>Reducing sugar (<b>a</b>), starch content (<b>b</b>), total organic acid (<b>c</b>), and ascorbic acid (<b>d</b>) of tomato fruits on 0, 7, 14, and 21 days of storage in response to preharvest humic acid, fulvic acid, and salicylic acid treatments. Bars with the same letters are not significantly differed at <span class="html-italic">p</span> ≤ 0.05 level. T1: 20 mL L<sup>−1</sup> HA plus 2 g L<sup>−1</sup> FA, T2: 20 mL L<sup>−1</sup> HA plus 0.5 g L<sup>−1</sup> SA, T3: 40 mL L<sup>−1</sup> HA plus 2 g L<sup>−1</sup> FA, T4: 40 mL L<sup>−1</sup> HA plus 0.5 g L<sup>−1</sup> SA, and T5: untreated plants. Mean values sharing the same lower-case letter in the same column do not differ significantly at <span class="html-italic">p</span> ≤ 0.05 by Duncan test.</p>
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<p>α-amylase (<b>a</b>), catalase (<b>b</b>), and peroxidase (<b>c</b>) enzymes of tomato fruits on 0, 7, 14, and 21 days of the storage period in response to preharvest humic acid, fulvic acid, and salicylic acid treatments. Bars with the same letters are not significantly differed at <span class="html-italic">p</span> ≤ 0.05 level. T1: 20 mL L<sup>−1</sup> HA plus 2 g L<sup>−1</sup> FA, T2: 20 mL L<sup>−1</sup> HA plus 0.5 g L<sup>−1</sup> SA, T3: 40 mL L<sup>−1</sup> HA plus 2 g L<sup>−1</sup> FA, T4: 40 mL L<sup>−1</sup> HA plus 0.5 g L<sup>−1</sup> SA, and T5: untreated plants. Mean values sharing the same lower-case letter in the same column do not differ significantly at <span class="html-italic">p</span> ≤ 0.05 by Duncan test.</p>
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<p>Tannin (<b>a</b>) and pectin content (<b>b</b>) of tomato fruits on 0, 7, 14, and 21 days of storage in response to preharvest humic acid, fulvic acid, and salicylic acid treatments. Bars with the same letters are not significantly differed at <span class="html-italic">p</span> ≤ 0.05 level. T1: 20 mL L<sup>−1</sup> HA plus 2 g L<sup>−1</sup> FA, T2: 20 mL L<sup>−1</sup> HA plus 0.5 g L<sup>−1</sup> SA, T3: 40 mL L<sup>−1</sup> HA plus 2 g L<sup>−1</sup> FA, T4: 40 mL L<sup>−1</sup> HA plus 0.5 g L<sup>−1</sup> SA, and T5: untreated plants. Mean values sharing the same lower-case letter in the same column do not differ significantly at <span class="html-italic">p</span> ≤ 0.05 by Duncan test.</p>
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