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KEGG   Panicum virgatum (switchgrass): 120664202
Entry
120664202         CDS       T07260                                 
Name
(RefSeq) chromatin structure-remodeling complex protein BSH-like
  KO
K11648  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
pvir  Panicum virgatum (switchgrass)
Pathway
pvir03082  ATP-dependent chromatin remodeling
pvir03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:pvir00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    120664202
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    120664202
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:pvir01009]
    120664202
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pvir03021]
    120664202
   03036 Chromosome and associated proteins [BR:pvir03036]
    120664202
Protein phosphatases and associated proteins [BR:pvir01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     120664202
Transcription machinery [BR:pvir03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    BAF/PBAF complex
     120664202
    SWI/SNF complex
     120664202
Chromosome and associated proteins [BR:pvir03036]
 Eukaryotic type
  Chromatin remodeling factors
   BAF complex
    120664202
   PBAF complex
    120664202
   SWI/SNF complex
    120664202
SSDB
Motif
Pfam: SNF5
Other DBs
NCBI-GeneID: 120664202
NCBI-ProteinID: XP_039799207
LinkDB
Position
3N:complement(9156457..9159329)
AA seq 255 aa
MKTVSLGASRPSTVNFRMPTRDNLVPIRVDLEVDGQRYRDAFTWNPRDPDSEIISFAKRT
AKDLKLPANFVPQMLQSIQGQLAEFRSYEGQEMQIKEKIVPLKIDLRVNNTVIRDQFLWD
IGNLDSDPEEFARTLCDDLNITDPEVGPAIAVSIREQLYEIASQSDSVMREKQLSKKGRR
APEFSSNSKAMNNAVDLFKYFGSKGSVIRKRKEWYLYEPVVDVVANEEDGKEEPNNSSRP
KKRAEEEKVASLQSL
NT seq 768 nt   +upstreamnt  +downstreamnt
atgaagacggtcagcctcggcgcctccaggccctccaccgtcaacttccgcatgccgacg
agggacaacctggtgccgatacgcgtcgacctcgaggtggacgggcagcgctacagggac
gccttcacctggaacccgcgagaccctgactcagagatcatcagcttcgccaagcggacg
gccaaggacctcaagctgccggccaatttcgtcccccagatgctccagtccatccagggg
caacttgcggagttccgctcctacgaggggcaggagatgcagatcaaggagaagattgtg
cctctcaagattgacctccgagtgaacaacactgtaataagagaccagttcctatgggat
attggcaaccttgatagtgaccctgaggaatttgcgaggacgctatgtgacgatttgaac
atcacagatcctgaagttgggccggcaatagctgtttccatccgtgagcagctttatgag
attgctagtcagagtgactctgttatgagagagaagcaattgtcaaagaagggaaggcga
gcaccagaattttcttcgaatagcaaagctatgaacaacgcggtggacttattcaagtat
tttggcagcaaaggaagcgtcattcggaaaaggaaggaatggtatctgtatgagcccgtt
gtggatgttgtagctaatgaggaagatggaaaagaggagcctaataattctagtaggccg
aagaagcgagcagaagaagagaaagtcgcaagtcttcaatccctttga

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