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Tigriopus californicus (tidepool copepod): 131889858
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Entry
131889858 CDS
T09700
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A-like
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
tcf
Tigriopus californicus (tidepool copepod)
Pathway
tcf03082
ATP-dependent chromatin remodeling
tcf03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
tcf00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
131889858
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
131889858
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
tcf01009
]
131889858
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tcf03021
]
131889858
03036 Chromosome and associated proteins [BR:
tcf03036
]
131889858
Protein phosphatases and associated proteins [BR:
tcf01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
131889858
Transcription machinery [BR:
tcf03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
131889858
SWI/SNF complex
131889858
Chromosome and associated proteins [BR:
tcf03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
131889858
PBAF complex
131889858
SWI/SNF complex
131889858
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF5
INI1_DNA-bd
Motif
Other DBs
NCBI-GeneID:
131889858
NCBI-ProteinID:
XP_059095051
LinkDB
All DBs
Position
11:499218..501172
Genome browser
AA seq
393 aa
AA seq
DB search
MVVKTYGERPMVFRFGEGEQEEEYMIGSEVGNYLRMFRGALYKRYPGLSRRNLTVDERKK
LVEMGHSQHVTASSISLLKAAEVELILQGHDDQFKGSAMVAAANAQAGVTLGGEPGPGAT
PNLAGVGGTPRPRAKPAPFVPTMPNSSHLDAVPQPTPINRNRVVHKKVRTFPFCFDDTDP
GAVHDNAGLPEVLVPIRMDMDIEGQKLRDTFLWNKNETLITPEMFAEVICDDLDLNPINF
VPAIAAAVQQQLDSFPTDTENLLKEQADQRVIIKLNIHVGNISLVDQFEWDLAEENNTPE
EFAKKICADLSLGGEFVSAIAYSIRGQLAWHQKTYAFSDNHLPPVELAFRTQNDADTWSP
FLETLTDAEMEKKIRDQDRNTRRMRRLAAAQPY
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atggtggtgaaaacgtacggcgagcgccccatggtgtttcgcttcggcgagggcgagcaa
gaggaggagtacatgatcggatcggaggtgggcaactacctgcgcatgttccgcggcgcc
ctctacaagcgctatcccggactctcgcgccgcaatctgaccgtggacgagcgcaagaag
ctggtcgagatgggccactcgcagcacgtgacggcctcgtccatctcgctgctcaaggcc
gccgaggtcgagctcatcctccaaggccacgacgaccaattcaagggctcggccatggtg
gccgcggccaatgcgcaggccggcgtgaccttaggcggcgagcccggcccaggcgccacg
cccaacttggccggggtgggtggaacgccgcgtccgcgggctaaacccgccccctttgtg
cccaccatgcccaattcctcccatttggatgccgtgcctcagcccacgcccatcaatcgc
aaccgggtggtgcacaagaaggtacggaccttcccgttctgcttcgatgacacggacccg
ggcgccgtgcacgacaatgcgggcttgcccgaggtgttggtgcccatccggatggacatg
gacatcgagggccagaaattgcgcgacacgttcctgtggaacaagaacgagacgctcatc
acgccggaaatgttcgccgaagtgatttgcgacgacctggacctgaaccccatcaacttc
gtgccggccatcgcggccgccgtccaacagcaattggacagcttccccacggacacggag
aacctgctcaaggagcaagccgaccaacgcgttatcatcaagctcaacatccacgtgggc
aacatctcgttggtggaccagttcgagtgggacctggccgaggagaacaacacgcccgag
gagttcgccaagaagatctgcgccgacttgagcttggggggcgagttcgtctcggccatt
gcctactccattcgcggacagttggcctggcatcagaagacgtacgccttctcggacaac
catttaccgcccgtggagttggcgtttcggacgcaaaatgacgcggacacgtggtcgccg
ttcctggagacactcaccgacgccgagatggaaaagaagatccgcgatcaagaccgcaac
acgcgacgcatgcggcgcctggccgcggctcaaccgtactag
DBGET
integrated database retrieval system