ncRNAtools
This is the released version of ncRNAtools; for the devel version, see ncRNAtools.
An R toolkit for non-coding RNA
Bioconductor version: Release (3.20)
ncRNAtools provides a set of basic tools for handling and analyzing non-coding RNAs. These include tools to access the RNAcentral database and to predict and visualize the secondary structure of non-coding RNAs. The package also provides tools to read, write and interconvert the file formats most commonly used for representing such secondary structures.
Author: Lara Selles Vidal [cre, aut] , Rafael Ayala [aut]
, Guy-Bart Stan [aut]
, Rodrigo Ledesma-Amaro [aut]
Maintainer: Lara Selles Vidal <lara.selles at oist.jp>
citation("ncRNAtools")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ncRNAtools")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ncRNAtools")| rfaRm | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataImport, FunctionalGenomics, Software, StructuralPrediction, ThirdPartyClient, Visualization |
| Version | 1.16.0 |
| In Bioconductor since | BioC 3.12 (R-4.0) (4 years) |
| License | GPL-3 |
| Depends | |
| Imports | httr, xml2, utils, methods, grDevices, ggplot2, IRanges, GenomicRanges, S4Vectors |
| System Requirements | |
| URL | |
| Bug Reports | https://github.com/LaraSellesVidal/ncRNAtools/issues |
See More
| Suggests | knitr, BiocStyle, rmarkdown, RUnit, BiocGenerics |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | ncRNAtools_1.16.0.tar.gz |
| Windows Binary (x86_64) | ncRNAtools_1.16.0.zip |
| macOS Binary (x86_64) | ncRNAtools_1.16.0.tgz |
| macOS Binary (arm64) | ncRNAtools_1.16.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/ncRNAtools |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ncRNAtools |
| Bioc Package Browser | https://code.bioconductor.org/browse/ncRNAtools/ |
| Package Short Url | https://bioconductor.org/packages/ncRNAtools/ |
| Package Downloads Report | Download Stats |