HPAanalyze

This is the released version of HPAanalyze; for the devel version, see HPAanalyze.

Retrieve and analyze data from the Human Protein Atlas

Bioconductor version: Release (3.20)

Provide functions for retrieving, exploratory analyzing and visualizing the Human Protein Atlas data.

Author: Anh Nhat Tran [aut, cre]

Maintainer: Anh Nhat Tran <trannhatanh89 at gmail.com>

Citation (from within R, enter citation("HPAanalyze")):

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("HPAanalyze")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HPAanalyze")

1. Quick-start guide: Acquire and visualize the Human Protein Atlas (HPA) data in one function with HPAanalyze	HTML	R Script
2. In-depth: Working with Human Protein Atlas (HPA) data in R with HPAanalyze	HTML	R Script
3. Tutorial: Combine HPAanalyze with your Human Protein Atlas (HPA) queries	HTML	R Script
4. Tutorial: Working with Human Protein Atlas (HPA) xml files offline	HTML	R Script
5. Tutorial: Export Human Protein Atlas (HPA) data as JSON	HTML	R Script
6. Tutorial: Download histology images from the Human Protein Atlas	HTML	R Script
99. Code for figures from HPAanalyze paper	HTML	R Script
Reference Manual	PDF
NEWS	Text
LICENSE	Text

biocViews	CellBiology, Proteomics, Software, Visualization
Version	1.24.0
In Bioconductor since	BioC 3.8 (R-3.5) (6 years)
License	GPL-3 + file LICENSE
Depends	R (>= 3.5.0)
Imports	dplyr, openxlsx, ggplot2, tibble, xml2, stats, utils, gridExtra
System Requirements
URL	https://github.com/anhtr/HPAanalyze
Bug Reports	https://github.com/anhtr/HPAanalyze/issues

Suggests	knitr, rmarkdown, markdown, devtools, BiocStyle
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Follow Installation instructions to use this package in your R session.

Source Package	HPAanalyze_1.24.0.tar.gz
Windows Binary (x86_64)	HPAanalyze_1.24.0.zip
macOS Binary (x86_64)	HPAanalyze_1.24.0.tgz
macOS Binary (arm64)	HPAanalyze_1.24.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/HPAanalyze
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/HPAanalyze
Bioc Package Browser	https://code.bioconductor.org/browse/HPAanalyze/
Package Short Url	https://bioconductor.org/packages/HPAanalyze/
Package Downloads Report	Download Stats