AnVILBase

This is the released version of AnVILBase; for the devel version, see AnVILBase.

Generic functions for interacting with the AnVIL ecosystem

Bioconductor version: Release (3.20)

Provides generic functions for interacting with the AnVIL ecosystem. Packages that use either GCP or Azure in AnVIL are built on top of AnVILBase. Extension packages will provide methods for interacting with other cloud providers.

Author: Marcel Ramos [aut, cre] , Martin Morgan [aut, ctb] , NIH NHGRI U24HG004059 [fnd]

Maintainer: Marcel Ramos <marcel.ramos at sph.cuny.edu>

Citation (from within R, enter citation("AnVILBase")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("AnVILBase")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AnVILBase")

Introduction to AnVILBase	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Infrastructure, Software
Version	1.0.0
In Bioconductor since	BioC 3.20 (R-4.4) (< 6 months)
License	Artistic-2.0
Depends
Imports	httr, httr2, dplyr, jsonlite, methods, tibble
System Requirements
URL	https://github.com/Bioconductor/AnVILBase
Bug Reports	https://github.com/Bioconductor/AnVILBase/issues

Suggests	AnVIL, AnVILAz, AnVILGCP, BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0), tinytest
Linking To
Enhances
Depends On Me	AnVIL, AnVILWorkflow
Imports Me	AnVILAz, AnVILGCP
Suggests Me	terraTCGAdata
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	AnVILBase_1.0.0.tar.gz
Windows Binary (x86_64)	AnVILBase_1.0.0.zip
macOS Binary (x86_64)	AnVILBase_1.0.0.tgz
macOS Binary (arm64)	AnVILBase_1.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/AnVILBase
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/AnVILBase
Bioc Package Browser	https://code.bioconductor.org/browse/AnVILBase/
Package Short Url	https://bioconductor.org/packages/AnVILBase/
Package Downloads Report	Download Stats