Original Research
Expression and Characterization of Glycosyl Hydrolase
Family 115 a-Glucuronidase from Scheffersomyces stipitis
Paramjit K. Bajwa, Sean Harrington, Mehdi Dashtban,
and Hung Lee
School of Environmental Sciences, University of Guelph, Guelph,
Canada
Abstract
The gene encoding glycosyl hydrolase family 115 aglucuronidase from Scheffersomyces stipitis (ssagu115) was
cloned and expressed in Pichia pastoris strain X33. The recombinant enzyme was purified to homogeneity by Ni-chelation affinity chromatography. The apparent molecular weight of the
secreted recombinant enzyme was about 150 kDa as determined
by sodium dodecyl sulfate polyacrylamide gel electrophoresis.
The recombinant a-glucuronidase was able to remove 4-Omethylglucuronic acid groups from several polymeric xylans
(beech, birch, and oat spelt xylan) as well as xylooligosaccharides
(aldotetraouronic acid and aldopentaouronic acid). The enzyme
was more active towards xylooligosaccharides than xylans.
Substrate inhibition was observed with aldouronic acids at concentrations above 23 mM. The Km values of the enzyme towards
aldotetraouronic and aldopentaouronic acids were 8.2 mM
(5 mg/mL) and 9 mM (6.5 mg/mL), respectively. For beech and
birch xylan, the Km values were 9.5 mg/mL and 35 mg/mL, respectively. The enzyme was active over the pH range of 3.0–8.5,
with maximal activity at pH 4.0. The optimum temperature for
activity of the enzyme was 50C. The enzyme exhibited synergy
with endoxylanases from the GH10 and GH11 families on hydrolysis of beech xylan, birch xylan, and oat spelt xylan, with the
greatest synergistic effect being shown with the GH10 endoxylanase. Treatment of polymeric xylan with SsAgu115 led to
reduced solubility and increased precipitation from solution. Insoluble xylans have the potential to form hydrogels, which may
have pharmaceutical and biomedical applications.
Key words: a-glucuronidase, glycosyl hydrolase, 4-Omethylglucuronic acid, pentose-fermenting, Pichia pastoris,
Scheffersomyces stipitis, xylan, yeast
a
Introduction
-glucuronidase catalyzes the hydrolysis of a-(1-2)linked 4-O-methylglucuronic acid (MeGlcA) residues from xylooligosaccharides or xylan.1,2 To date,
only two glycosyl hydrolase (GH) enzyme families,
98 INDUSTRIAL BIOTECHNOLOGY A P R I L 2 0 1 6
namely GH67 and GH115, have been identified that exhibit aglucuronidase activity on xylooligosaccharides or xylan.1,2 Most
of the known a-glucuronidases that remove MeGlcA residues
from xylooligosaccharides belong to the GH67 family. Members
of this family remove MeGlcA residues only from the terminal
non-reducing end of the xylooligosaccharides but not for polymeric xylan. In 2009, Ryebova et al. reported the existence of an
extracellular a-glucuronidase from Scheffersomyces stipitis that
could remove MeGlcA residues from the internal chain of xylan.
This activity is not exhibited by members of the GH 67 family. The
discovery of the S. stipitis enzyme led to the classification of a new
GH115 family. Prior to this discovery, another a-glucuronidase
from Schizophyllum commune was shown to exhibit activity towards polymeric xylan.3 At that time, the GH115 family was not
known and the authors reported a lack of sequence homology of
this enzyme with other known GH67 enzymes. Subsequently,
a-glucuronidase from another S. commune strain was characterized and confirmed to be a member of the GH115 family.4
About 265 members of the GH115 family have been identified
by sequence analysis.5 The majority are from bacterial sources.
Among these, three prokaryotic enzymes from Bacteroides
ovatus, Bacteroides thetaiotaomicron, and Streptomyces pristinaespiralis, and two eukaryotic enzymes from S. stipitis and
S. commune have been shown to display a-glucuronidase activity.2–4,6–9 Members of the GH115 family share 31–45% primary
sequence identity and the conserved residues are distributed
throughout the protein sequences without clear regions of homology. The native GH115 enzyme was purified from S. stipitis,
which is a naturally occurring xylose-fermenting yeast with the
rare ability to hydrolyze xylan and ferment the resultant xylose
directly to ethanol.10 Sequence analysis of the S. stipitis GH115
(SsAgu115) confirmed its unique identity, distinct from GH67 as
well as other previously characterized GH family enzymes.2
Although SsAgu115 is active against both xylooligosaccharides
and polymeric xylan, its activity was higher against the former.8
This suggests that synergistic activity of GH115 with endoxylanases is required for appreciable MeGlcA liberation.
However, no information is available on the kinetic parameters
for a eukaryotic GH115 enzyme.
In this study, the gene encoding a-glucuronidase from S. stipitis
was cloned and expressed in Pichia pastoris. The recombinant
enzyme was subjected to kinetic and functional characterization
using several xylo-oligosaccharides and xylans. This is the
first report on kinetic characterization of a eukaryotic GH115
a-glucuronidase. We also determined the synergistic action of
SsAgu115 and endo-1,4-b-xylanases belonging to the GH10 and
GH11 families on hydrolysis of beech xylan, birch xylan, and oat
DOI: 10.1089/ind.2015.0031
GH115 a-GLUCURONIDASE FROM S. STIPITIS
spelt xylan. In addition, the ability of SsAgu115 to reduce the
solubility of polymeric xylan was assessed. Selective removal of
MeGlcA reduces the solubility of xylan. Insoluble xylans may
form hydrogels that have biotechnological applications in the
pharmaceutical and biomedical fields.11,12
Materials and Methods
CHEMICALS, MICROBIAL STRAINS, VECTORS,
CULTURE MAINTENANCE
All chemicals were purchased from Sigma–Aldrich (Oakville, Canada). A genomic DNA isolation kit was purchased
from Qiagen (Toronto, Canada). Ni Sepharose excel affinity
resin was purchased from GE Healthcare Life Sciences (Mississauga, Canada). EKMax enterokinase and NuPAGE Novex
10% Bris-Tris gel were purchased from Life Technologies
(Burlington, Canada). GH10 xylanase from Bacillus stearothermophilus T6 and GH11 xylanase from Thermomyces lanuginosus were purchased from Megazyme (Wicklow, Ireland)
and Sigma-Aldrich, respectively. a-glucuronidase assay and
D-glucuronic/D-galacturonic acid assay kits were purchased
from Megazyme. Beech xylan, birch xylan, and oat spelt xylan
were purchased from Sigma-Aldrich. S. stipitis NRRL Y-7124
(NRC 2548) was obtained from the National Research Council
Canada Culture Collection (Ottawa). P. pastoris X-33 and yeast
expression vector pPICZaC were obtained from Life Technologies (Norwalk, CT). pPICZaC has an a-factor secretion signal
for directing expression of the recombinant protein and a zeocin
antibiotic resistance gene for selection in both Escherichia coli
and P. pastoris. S. stipitis and P. pastoris cultures were individually maintained on YPD agar (dextrose 2%, peptone 2%,
yeast extract 1%, and agar 1.5%) plates at 4C and were subcultured at monthly intervals. All the strains were stored in 25%
(w/v) glycerol for long-term preservation.
CLONING, EXPRESSION VECTOR CONSTRUCTION,
AND MAINTENANCE IN E. COLI
S. stipitis genomic DNA was purified using a DNeasy minikit
from Qiagen (Hilden, Germany) according to the manufacturer’s directions. The ssagu115 gene (GenBank accession number
NC_009046) was amplified from S. stipitis genomic DNA using
forward (5¢-GTGCGGTACCCATATGTTGTTTCATACTTCC
AGCGT-3¢) and reverse primers (5¢-GTGCGCATGCGCTCT
TCCGCACTTTTTGATGTAAGTTTCTGGTGGTCC-3¢). Restriction sites used for directional cloning are underlined in the
above sequences. Amplification was carried out using Phusion
high-fidelity DNA polymerase under the following conditions:
denaturation at 98C for 3 min, followed by 25 cycles of amplification at 98C for 30 s, 50C for 50 s, and 72C for 2 min.
The part of the gene coding for the first 18 amino acids was
omitted from the sequence during polymerase chain reaction
(PCR) cloning. This sequence corresponds to the enzyme
secretion signal sequence and is not preserved in the mature extracellular protein of 979 amino acids.2 The ssagu115 gene was
cloned in pUC19 previously digested with KpnI and SphI and
maintained in E. coli TOP10 cells. The ssagu115 gene was also
cloned into pTYB1 previously digested with Nde1 and Sap1 and
maintained in T7 Express Competent E. coli cells. ssagu115 was
subcloned into pPICZaC downstream of the AOX1 promoter and
the a-factor signal sequence using the In-Fusion EcoDry Cloning
kit (Clontech Laboratories, Mountain View, CA) following the
manufacturer’s directions. The sequences for the forward primer
and reverse primers were: 5¢-TCTCTCGAGAAGAGACATCA
TCATCATCATCATgacgacgacgacaagTTGGGTGGGTTGCAAA
ATATT-3¢ and 5¢-TCTAAGGCTACAAACCTATTTGATGT
AAGTTTCTGGTGGTG-3¢, respectively (sequences specific
to ssagu115 are shown in normal upper case letters while vectorspecific sequences are shown in bold upper case letters). Sequences for N-terminal 6·His-tag (upper case italics) and
enterokinase cleavage site (lower case) were incorporated in the
forward primer. The recombinant plasmid (pPICZaC-SsAgu115)
was transformed into HST08 E. coli stellar competent cells, and
positive clones were selected on low salt Luria-Bertani (LB) agar
(1% tryptone, 0.5% yeast extract, 0.5% NaCl, and 1.5% agar, pH
7.5) plates supplemented with 25 lg/mL zeocin. The correct insert was confirmed by DNA sequencing in both directions.
TRANSFORMATION OF P. PASTORIS CELLS
P. pastoris X-33 cells were transformed with 5–10 lg of
PmeI-linearized recombinant plasmid (pPICZaC-SsAgu115) by
electroporation using the Gene Pulser (Bio-Rad; Hercules, CA)
following the Invitrogen transformation protocol described in the
manual for Pichia expression vectors. The electroporated cells
were spread on YPDS (2% peptone, 2% dextrose, and 1 M sorbitol)
agar plates supplemented with 100 lg/mL zeocin and incubated at
30C for 3–5 days until colonies formed. About 30 randomly selected colonies were individually streaked on 100 lg/mL zeocincontaining YPDS agar plates. The presence of the ssagu115 gene
in the transformants was confirmed by PCR using insert- and
vector-specific primers with yeast genomic DNA as the template.
EXPRESSION OF SSAGU115 IN P. PASTORIS
Expression studies were done following the Invitrogen protocol from the Pichia expression kit. Ten positive transformants
were grown individually in 5 mL of YPD medium in 50-mL
sterile tubes at 30C for 24 h with shaking at 200 rpm. Each
culture was then inoculated into 25 mL of BMGY medium (2%
w/v peptone, 1.34% w/v yeast nitrogen base, 4 · 10-5% w/v biotin, 1% v/v glycerol, and 100 mM potassium phosphate, pH 6.0)
in a 250-mL Erlenmeyer flask and shaken (200 rpm) overnight at
30C. The cells were centrifuged at 10,000·g for 10 min at 4C
and resuspended in 25 mL of BMMY induction medium (1% w/v
yeast extract, 2% w/v peptone, 1.34% w/v yeast nitrogen base,
4 · 10-5 % w/v biotin, 1% v/v methanol, and 100 mM potassium
phosphate, pH 6.0). To maintain induction, methanol was added
every 24 h to a final concentration of 1.0% (v/v) for 5 days.
Samples were withdrawn every 24 h and extracellular protein
expression was determined by SDS-PAGE (NuPAGE Novex
10% Bris-Tris gel). After 5 days, a-glucuronidase activity was
measured and the clone with the highest activity was selected for
scale-up production. Large-scale (2-L) protein expression was
carried out following the Invitrogen protocol described in the
Pichia expression kit.
His-tagged SsAgu115 was purified from the supernatant by
immobilized metal ion affinity chromatography (IMAC), using
ª M A R Y A N N L I E B E R T , I N C . VOL. 12
NO. 2 APRIL 2016
INDUSTRIAL BIOTECHNOLOGY 99
BAJWA ET AL.
Ni Sepharose excel affinity resin according to the manufacturer’s
instructions. His-tagged protein was eluted using an elution buffer
comprised of 50 mM NaH2PO4 (pH 7.0), 0.5 M NaCl, 250 mM
imidazole, and 10% (v/v) glycerol. Finally, the His-tag was
cleaved using enterokinase. Ten milligrams of the purified protein
dissolved in 50 mM NaH2PO4 (pH 7.0), 50 mM NaCl, and 1 mM
CaCl2 was mixed with enterokinase (100 U), and the reaction
mixture was incubated at 23C for 16–18 h and loaded onto a Ni
Sepharose excel affinity resin column to remove any uncleaved
protein. The uncleaved protein was bound to the resin while the
cleaved protein along with enterokinase was eluted in the flow
through. Enterokinase was removed by passing the flow through
containing the cleaved protein through Amicon ultra-15 centrifugal filter units with a 50-kDa cut-off. The protein was finally
exchanged into the storage buffer containing 50 mM NaH2PO4
(pH 7.0), 0.5 M NaCl, and 10% glycerol and stored at -20C.
ENZYME SUBSTRATES AND ASSAY
Aldotetraouronic acid (UXX) was prepared by hydrolyzing
beech xylan with GH10 endo-1,4-b-xylanase from B. stearothermophilus T6. GH10 xylanase generates predominantly
UXX along with small amounts of xylobiose and xylotriose
from xylan hydrolysis. In aldotetraouronic acid generated by a
GH10 xylanase, the non-reducing xylose residue of xylotriose is
substituted with MeGlcA.13 The reaction mixture containing
50 mM potassium phosphate buffer (pH 6.0), 4% (w/v) beech
xylan, and 100 U of GH10 xylanase was incubated for 18–24 h
at 40C. Aldopentaouronic acid (XUXX) was prepared by
hydrolyzing beech xylan with recombinant GH11 endo-1,4-bxylanase from T. lanuginosus. GH11 xylanase generates predominantly XUXX along with small amounts of xylobiose
and xylotriose from xylan hydrolysis. In XUXX generated by
a GH11 xylanase, the xylose residue immediately following
the non-reducing residue of xylotetrose is substituted with
MeGlcA.13 The reaction mixture containing 50-mM potassium
phosphate buffer (pH 6.0), 4% (w/v) beech xylan, and 2,500 U of
GH11 xylanase was incubated for 18–24 h at 40C. Acidic xylooligosaccharides were purified from the digestion mixture by
passing through a column of AG1–X8 anion exchange resin
(acetate form). After eluting the neutral sugars by water, acidic
oligosaccharides were eluted by 3 M acetic acid. Acetic acid was
removed by evaporation.
SsAgu115 activity was measured using the a-glucuronidase
kit from Megazyme. Hydrolysis of xylan or acidic xyloologosaccharides by GH115 a-glucuronidase released 4-Omethylglucuronic acid, which was in turn oxidized by
nicotinamide adenine dinucleotide (NAD)-dependent uronate
dehydrogenase to D-glucarate. The coupled reaction was followed by measuring the formation of NADHat 340 nm. One
unit of a-glucuronidase activity was the amount of enzyme
required to liberate one lmole of MeGlcA per min.
INITIAL CHARACTERIZATION OF SSAGU115
To compare the ability of the recombinant SsAgu115 to hydrolyze substrates with different degrees of polymerization, the
enzyme reactions containing 2.8 lg of purified enzyme and
10 mg/mL of the individual substrates (XUXX, UXX, beech,
100 INDUSTRIAL BIOTECHNOLOGY A P R I L 2 0 1 6
birch, and oat spelt xylan) suspended in 50 mM sodium acetate
buffer (pH 5.0) were incubated for 15 min at 23C.
The effect of substrate concentration on a-glucuronidase activity was evaluated using varying concentrations of XUXX
(0.78-35 mM) and UXX (0.94-42 mM). For beech and birch
xylan, enzyme activity was measured at substrate concentrations
ranging from 2.85-60 mg/mL. The xylan substrates were added
to water and dissolved by heating. Due to the lower solubility of
xylans, concentrations higher than 60 mg/mL could not be tested. The assay was performed at 23C and pH 5.0. The Km and
Vmax values were estimated from the substrate dependence data
using the nonlinear regression function of Graph Pad Prism
version 6.04 for Windows (GraphPad Software, La Jolla, CA).
The Kcat values were calculated based on a molecular weight
(MW) of 150 kDa determined by SDS-PAGE. For determining
the optimal temperature and pH, the assays were performed
using 2.8 lg of the purified enzyme and XUXX as the substrate.
For optimal temperature determination, the reaction mixtures
were incubated for 15 min in 50 mM sodium acetate buffer (pH
5.0) at 23, 35, 45, 50, and 60C. Optimal pH was determined at
23C using buffers adjusted to pH values ranging from 3.0 to 8.5
(sodium acetate, pH 3.0–5.5; potassium phosphate, pH 6.0–8.5).
ENZYME SYNERGY STUDIES
Potential synergy between a-glucuronidase and xylanases
was evaluated by hydrolyzing individual substrates (beech,
birch, and oat spelt xylans) using 2.8 lg of purified SsAgu115—
either alone or in combination with 10 U of a GH10 or GH11
xylanase and 10 mg of the substrate in a standard assay done for
15 min at 50C.
EFFECT OF SSAGU115 ON XYLAN SOLUBILITY
The ability of SsAgu115 to reduce the solubility of polymeric
xylan was assessed qualitatively by incubating 25 mg/mL beech
xylan with 5 and 10 lg of purified SsAgu115 in 50 mM acetate
buffer pH 5.0 in a total volume of 1 mL. The reaction mixture
was incubated at 22C and 40C for 24 h, and the solubility of
xylan was assessed by measuring the turbidity of the reaction
mixture at 600 nm. Heat-killed enzyme was used in the control
samples. The amount of glucuronic acid released was estimated
using the a-glucuronidase kit from Megazyme. To estimate the
total glucuronic acid content of xylans, approximately 100 mg of
each polysaccharide was digested with 5 mL of 2 M H2SO4 in
screw cap glass tubes and incubated at 100C for 6 h. The tubes
were cooled to room temperature, and 7 mL of 2 M NaOH were
added. The contents of the tube were transferred to a 100 mL
volumetric flask, and the volume was adjusted to 100 mL with
distilled water. The solution was centrifuged at 1,500 g for
10 min prior to measuring the amount of glucuronic acid, as
described above. A control sample with glucuronic acid was
treated the same way to determine the extent of its degradation
during acid hydrolysis, and this was taken into account when
calculating the total amount of glucuronic acid in xylan.
ADDITIONAL PROCEDURES
Protein concentration was measured by the Bradford assay
using bovine serum albumin as the standard.14 The MW of the
GH115 a-GLUCURONIDASE FROM S. STIPITIS
enzyme was determined by SDS-PAGE and NativePAGE
(NativePAGE Novex 4–16% Bis-Tris Gels).
EXPERIMENTAL REPLICATION AND DATA ANALYSIS
All enzyme assays were conducted 3 times and the values
shown in the figures are the averages – standard deviations from
3 independent sets of experiments.
Results and Discussion
CLONING OF SSAGU115 GENE AND ITS
EXPRESSION IN P. PASTORIS
The 2,940-bp ssagu115 gene was cloned by PCR from the
S. stipitis genomic DNA into pPICZaC downstream of the
AOX1 promoter and the a-factor signal sequence to yield
pPICZaC-SsAgu115. The recombinant plasmid was transformed
into E. coli HST08 cells for maintenance and into P. pastoris X33
cells for expression. SsAgu115 was expressed as a secreted protein by P. pastoris cells under the control of AOX1 promoter. Ten
zeocin-resistant clones were randomly selected, cultured independently in BMMY medium for 72 h, and assayed for extracellular a-glucuronidase activity. All 10 clones showed good and
comparable enzyme activity; the clone with the highest activity
was selected for protein purification. No activity was detected in
the culture supernatant of a clone transformed with the insert-free
pPICZaC vector. About 5 mg of His-tagged recombinant enzyme
was purified per liter of culture supernatant.
Both the native S. stipitis a-glucuronidase and the recombinant form expressed in Saccharomyces cerevisiae have a MW of
120–125 kDa.2,15 However, the MW of the recombinant enzyme
secreted in the P. pastoris cultures was about 150 kDa, as determined by SDS-PAGE. The higher MW of the recombinant
enzyme secreted by P. pastoris was likely due to greater
glycosylation, as reported by some researchers for other recombinant enzymes.16–18 The MW of the recombinant S. stipitis
a-glucuronidase on non-denaturing native gel electrophoresis
was about 380 kDa, suggesting the presence of more than one
subunit. The optimal pH (pH 4.0) and temperature (50C) of the
recombinant a-glucuronidase closely resembled those reported
for the native enzyme (pH 4.4, 60C).2
BIOCHEMICAL PROPERTIES OF RECOMBINANT
S. STIPITIS a-GLUCURONIDASE
Substrate preference. To examine the substrate preference of
the recombinant a-glucuronidase, its specific activity was measured against short and longer chain substrates, including terminally or internally substituted aldouronic acids (UXX and XUXX)
and several xylans. Both terminally (UXX) and internally substituted (XUXX) aldouronic acids were hydrolyzed by the a-glucuronidase, with 1.7-fold higher specific activity against
UXX (24 U/mg) than XUXX (14 U/mg) (Fig. 1). Interestingly,
the specific activities of the recombinant enzyme towards aldouronic acids were about 3-fold higher compared to those reported for the native enzyme under similar assay conditions.8 The
reason for this difference is not known.
While the recombinant a-glucuronidase was able to release MeGlcA from xylan, it was more active against xylooligosaccharides, as has been reported for the native enzyme.8
Fig. 1. Specific activities of SsAgu115 on aldotetraouronic acid (UXX),
aldopentaouronic acid (XUXX), beech, birch, and oat spelt xylan
(10 mg/mL each) at 23C in 50 mM sodium acetate buffer (pH 5.0).
Among the xylans tested, the enzyme was most active against
beech xylan (specific activity of 4 U/mg), followed by birch
xylan (1 U/mg). Activity against oat spelt xylan was negligible.
Differences in enzyme activity against different xylans could be
attributed to differences in the degree of MeGlcA substitution
and the presence of other side groups between the xylans. Beech
and birch are angiosperms, in which the xylan is highly substituted with MeGlcA residues (20–35%).19–21 Oat spelt xylan is
an arabinoglucuronoxylan.19–21 It is possible that SsAgu115 was
hindered by the presence of L-arabinofuranosyl substituents,
and that the activity of a-glucuronidase on oat spelt xylan might
be enhanced by a-L-arabinofuranosidase.
Substrate dependence and kinetic parameters. To our knowledge, no information is available on the kinetic parameters for a
eukaryotic GH115 enzyme. In this study, kinetic and functional
characterization was done on SsAgu115. The kinetic parameters
were determined using UXX, XUXX, beech, and birch xylan as
substrates. SsAgu115 exhibited higher maximum activity (Vmax)
and affinity (lower Km) for xylooligosaccharides compared to
polymeric xylans (Table 1). Substrate inhibition was observed
at high concentrations of aldouronic acids, whereas normal
Michaelis–Menten kinetics were observed with the polymeric
substrates within the concentration ranges tested. The low solubility of xylan prevented higher concentrations from being
Table 1. Kinetic parameters for SsAgu115
Vmax
(lmole/
min/mg)
Km
(mg/mL)
Kcat
(min-1)
Kcat/Km
(min-1/
mg/mL)
UXX
24.9
5.1
4,150
813.7
XUXX
18.4
6.5
3,066
471.6
Beech xylan
8.7
9.5
1,450
152.6
Birch xylan
7
35
1,166
33.3
SUBSTRATE
ª M A R Y A N N L I E B E R T , I N C . VOL. 12
NO. 2 APRIL 2016
INDUSTRIAL BIOTECHNOLOGY 101
BAJWA ET AL.
Fig. 2. Effect of substrate concentration on SsAgu115 activity
towards aldouronic acids. Inset: Lineweaver–Burke plot. Symbols:
UXX and A XUXX.
tested. a-glucuronidase activity increased with increasing aldouronic acid concentrations to a maximum, beyond which a
further increase in substrate concentration (above 14 and 17 mg/
mL [23 mM] for UXX and XUXX, respectively) resulted in decreased enzyme activity (Fig. 2). Substrate inhibition (above
6 mM UXX and 25 mM UXXX) with aldouronic acids has
also been reported for the Aureobasidium pullulans GH67
a-glucuronidase.22
The Kcat of a-glucuronidase against beech xylan was about
3- and 2-fold lower than UXX and XUXX, respectively (Table 1).
Against birch xylan, the Kcat was about 3.5- and 2.6-fold lower
than UXX and XUXX, respectively. The enzyme showed a decreasing reaction rate and turnover number with substrates
of longer chain length. The substrate affinity and catalytic efficiency also declined with increasing chain length. Against birch
xylan, the apparent Km was 3.6-fold higher and catalytic efficiency was 4-fold lower compared to beech xylan (Table 1).
SYNERGY BETWEEN a-GLUCURONIDASE
AND ENDOXYLANASES
Most of the a-glucuronidases characterized to date belong to
the GH67 family. Since these enzymes remove MeGlcA residues only from the terminal nonreducing end of xylooligosaccharides, but not from polymeric xylan, they require the
synergistic action of endoxylanase and b-xylosidase for efficient
liberation of MeGlcA from polymeric substrates.3,23,24 GH115
enzymes, unlike GH67 enzymes, can remove terminal as well
internal MeGlcA residues from polymeric xylan as well as xylooligosaccharides.2 Therefore, it was of interest to assess if and to
what extent synergies exist between the endoxylanases and
GH115 enzyme.
In this study, the potential synergistic influence of GH10 and
GH11 endoxylanase on SsAgu115 was examined by incubating
102 INDUSTRIAL BIOTECHNOLOGY A P R I L 2 0 1 6
Fig. 3. Synergistic effect of GH10 and GH11 endoxylanases on
SsAgu115 activity towards beech, birch, and oat spelt xylan. Purified
SsAgu115 (2.8 lg) was tested either alone or in combination with
10 U of a GH10 or GH11 xylanase for 15 min at 50C in a standard
assay mixture that contained 10 mg of the substrate. Symbols: beech xylan, birch xylan, and , oat spelt xylan.
SsAgu115 and one of the endoxylanases with a xylan substrate.
The activity of a-glucuronidase was clearly enhanced in the
presence of GH10 or GH11 xylanase (Fig. 3). On beech xylan,
1.3- to 2-fold more MeGlcA was released when SsAgu115 was
tested together with a GH10 or GH11 xylanase. On birch xylan,
4-fold more MeGlcA was released by the combined action of
Fig. 4. Effect of SsAgu115 on solubility of beech xylan (25 mg/ml)
incubated at (A) 22C and (B) 40C for 24 h. Symbols:
5 lg
enzyme,
5 lg heat-killed enzyme,
10 lg enzyme, and
10 lg heat-killed enzyme.
GH115 a-GLUCURONIDASE FROM S. STIPITIS
a-glucuronidase and endoxylanases. The extent of MeGlcA removal from oat spelt xylan was slightly increased in the presence of a combination of enzymes. Since the activity of
SsAgu115 is lower on polymeric substrates compared to xylooligosaccharides, the presence of endoxylanases increased the
efficiency of side chain removal by hydrolyzing the polymer
into shorter chain substrates against which the a-glucuronidase
exhibited higher activity. Since the enzyme was more active on
terminally substituted aldouronic acids compared to internally
substituted aldouronic acids, the synergistic action was higher
in the presence of GH10 (which generated UXX) compared to
GH11 endoxylanase (which generated XUXX). It is not currently known how the other side chains in polymeric xylan affected SsAgu115 activity. A better picture would be available when
SsAgu115 is used in combination with endoxylanases and other
debranching enzymes such as acetylxylan esterase and a-Larabinofuranosidase. When GH115 a-glucuronidase from S.
commune was used in combination with acetylxylan esterase, xylanase, and b-xylosidase, more MeGlcA was released from acetylated glucuronoxylan from birch.3 However, no synergistic action
was seen between a-glucuronidase and a-L-arabinofuranosidase
in removing MeGlcA groups from arabinoglucuronoxylan from
spruce pulp, although a-L-arabinofuranosidase efficiently removed arabinose from spruce pulp.3
EFFECT OF SSAGU115 ON XYLAN SOLUBILITY
The presence of the various side groups on the xylan backbone renders xylan more soluble in water.3 Therefore, removal
of side chains is expected to change the solubility, rheological
property, and possibly the potential biotechnological applications of xylans. In this study, we assessed the ability of GH115
a-glucuronidase to reduce the solubility of beech xylan by incubating the xylan suspensions with GH115 enzyme for 24 h.
Treatment with the recombinant SsAgu115 resulted in increased
viscosity visible by eye and precipitation of the xylan as indicated by increased optical density (OD)600 (Fig. 4). At 22C,
OD600 increased from 0.52 to 1.47 and from 0.53 to 1.63 over
24 h when beech xylan was incubated with 5 lg and 10 lg of
enzyme, respectively. This corresponded to removal of about
48% of MeGlcA side groups from xylan. The increase in OD600
(0.5 to 1.79 and 0.51 to 1.90 with 5 lg and 10 lg of enzyme,
respectively) and percent removal of MeGlcA side groups
(56%) over 24 h were higher when the incubation temperature
was raised to 40C. OD600 did not increase over 24 h in the
control samples, to which heat-killed enzyme was added.
Conclusions
SsAgu115 was subjected to kinetic and functional characterization. The enzyme was more active against xylooligosaccharides than polymeric xylan. SsAgu115 acts in synergy
with GH10 and GH11 endoxylanases. Removel of MeGlcA side
groups by SsAgu115 reduces xylan solubility.
Insoluble xylans are potential raw materials for production of
hydrogels.11 A bioactive substance can be encapsulated within
the hydrogel and used for sustained slow-release or targeted
drug delivery.12 The utilization of SsAgu115 for reducing xylan
solubility is a new area of research with novel applications that
hold considerable promise and warrant further investigation.
Acknowledgments
This research was funded by the Ontario Ministry of Research
& Innovation. We thank Emma Master, Weijun Wang, and
Thu Vuong from University of Toronto for providing valuable
suggestions.
Author Disclosure Statement
No competing financial interests exist.
REFERENCES
1. Nurizzo D, Nagy T, Gilbert HJ, Davies, GJ. The structural basis for catalysis and
specificity of the Pseudomonas cellulosa a-glucuronidase, GlcA67A. Structure
2002;10:547–556.
2. Ryabova O, Vrsanska M, Kaneko S, et al. A novel family of hemicellulolytic
alpha-glucuronidase. FEBS Let 2009;583:1457–1462.
3. Tenkanen M, Siika-Aho M. An alpha-glucuronidase of Schizophyllum commune
acting on polymeric xylan. J Biotech 2000;78:149–161.
4. Chong S, Battaglia E, Coutinho P, et al. The alpha-glucuronidase Agu1 from
Schizophyllum commune is a member of a novel glycoside hydrolase family
(GH115). Appl Microbiol Biot 2011;90:1323–1332.
5. Lombard V, Golaconda RH, Drula E, et al. The carbohydrate-active enzymes
database (CAZy) in 2013. Nucleic Acids Res 2014;42:D490–D495.
6. Kolenova K, Ryabova O, Vsanska M, Biely P. Inverting character of family GH115
alpha-glucuronidases. FEBS Lett 2010;584:4063–4068.
7. Fujimoto Z, Ichinose H, Biely P, Kaneko S. Crystallization and preliminary
crystallographic analysis of the glycoside hydrolase family 115-glucuronidase
from Streptomyces pristinaespiralis. Acta Crystallograph Sect F Struct Biol Cryst
Commun 2010;67:68–71
8. Rogowski A, Basle A, Farinas C, et al. Evidence that GH115 alpha-glucuronidase
activity which is required to degrade plant biomass is dependent on
conformational flexibility. J Biol Chem 2014;283:53–64.
9. Aalbers F, Johan P, Turkenburg JP, et al. Structural and functional
characterization of a novel family GH115 4-O-methyl-a-glucuronidase with
specificity for decorated arabinogalactans. J Mol Biol 2015;427(24):3935–3946.
10. Lee H, Biely P, Latta RK, et al. Utilization of xylan by yeasts and its conversion to
ethanol by Pichia stipitis strains. Appl Environ Microbiol 1986;52:320–324.
11. Chimphango AFA, Rose SH, van Zyl WH, Görgens JF. Production and
characterisation of recombinant a-L-arabinofuranosidase for production of
xylan hydrogels. Appl Microbiol Biotechnol 2012;95:101–112.
12. van Zyl WH, Chimphango AFA, Görgens JF. (6 August 2014) An enzymatic
method of producing a hydrogel from xylan. Patent no. WO 2011154803 A1.
13. Biely P, Vrsanska M, Tenkanen M, Kluepfel, D. Endo-beta-1,4-xylanase families:
Differences in catalytic properties. J Biotechnol 1997;57:151–166.
14. Bradford MM. A rapid and sensitive method for the quantification of
microgram quantities of protein utilizing the principle of protein-dye binding.
Anal Biochem 1976;72:248–254.
15. Anane E, Van Rensburg E, Gorgens J. Optimisation and scale-up of alphaglucuronidase production by recombinant Saccharomyces cerevisiae in aerobic
fed-batch culture with constant growth rate. Biochem Eng J 2013;81:1–7.
16. Juturu V, Wu JC. Heterologous expression of b-xylosidase gene from
Paecilomyces thermophila in Pichia pastoris. World J Microbiol Biotechnol
2013;29:249–255.
17. Zhang R, Fan Z, Kasuga T. Expression of cellobiose dehydrogenase from
Neurospora crassa in Pichia pastoris and its purification and characterisation.
Protein Expr Purif 2011;75:63–69.
18. Sriyapai T, Somyoonsap P, Matsui K, et al. Cloning of a thermostable xylanase
from Actinomadura sp. S14 and its expression in Escherichia coli and Pichia
pastoris J Biosci Bioeng 2011;111:528–536.
ª M A R Y A N N L I E B E R T , I N C . VOL. 12
NO. 2 APRIL 2016
INDUSTRIAL BIOTECHNOLOGY 103
BAJWA ET AL.
19. Aspinall GO. Chemistry of cell wall polysaccharides. Biochem Plants
1980;3:473–500.
20. Teleman A, Lundqvist J, Tjerneld F, et al. Characterization of acetylated 4-Omethylglucuronoxylan isolated from aspen employing 1H and 13C NMR
spectroscopy. Carbohydr Res 2000;329:807–815.
21. Timell TE. Recent progress in the chemistry of wood hemicelluloses. Wood Sci
Technol 1967;1:45–70
22. De Wet BJ, Van Zyl WH, Prior BA. Characterization of the Aureobasidium
pullulans a-glucuronidase expressed in Saccharomyces cerevisiae. Enzyme
Microb Technol 2006;38:649–656.
23. de Vries RP, Poulsen CH, Madrid S, Visser J. aguA, the gene encoding an
extracellular a-glucuronidase from Aspergillus tubingensis, is specifically
induced on xylose and not on glucuronic acid. J Bacteriol 1998;180:
243–249.
104 INDUSTRIAL BIOTECHNOLOGY A P R I L 2 0 1 6
24. Shao W, Samuel KCO, Pulps J, Wiegel J. Purification and characterization of the
a-glucuronidase from Thermoanaerobacterium sp. strain JW:SL-YS485, an
important enzyme for the utilization of substituted xylans. Appl Environ
Microbiol 1995;61:1077–1081.
Address correspondence to:
Hung Lee, PhD
School of Environmental Sciences
University of Guelph
Guelph, Ontario
Canada N1G 2W1
Phone: 519-824-4120, Ext.53828
E-mail: hlee@uoguelph.ca