Vol 454 | 24 July 2008 | doi:10.1038/nature06970
LETTERS
Ecosystem energetic implications of parasite and
free-living biomass in three estuaries
Armand M. Kuris1*, Ryan F. Hechinger1*, Jenny C. Shaw1, Kathleen L. Whitney1, Leopoldina Aguirre-Macedo2,
Charlie A. Boch1, Andrew P. Dobson3, Eleca J. Dunham4, Brian L. Fredensborg5, Todd C. Huspeni6, Julio Lorda1,
Luzviminda Mababa1, Frank T. Mancini7, Adrienne B. Mora8, Maria Pickering9, Nadia L. Talhouk1, Mark E. Torchin10
& Kevin D. Lafferty11
Parasites can have strong impacts but are thought to contribute
little biomass to ecosystems1–3. We quantified the biomass of freeliving and parasitic species in three estuaries on the Pacific coast of
California and Baja California. Here we show that parasites have
substantial biomass in these ecosystems. We found that parasite
biomass exceeded that of top predators. The biomass of trematodes was particularly high, being comparable to that of the
abundant birds, fishes, burrowing shrimps and polychaetes.
Trophically transmitted parasites and parasitic castrators subsumed more biomass than did other parasitic functional groups.
The extended phenotype biomass controlled by parasitic castrators sometimes exceeded that of their uninfected hosts. The annual
production of free-swimming trematode transmission stages was
greater than the combined biomass of all quantified parasites and
was also greater than bird biomass. This biomass and productivity
of parasites implies a profound role for infectious processes in
these estuaries.
Standing stock biomass and biomass production are traditional
measures of the energetics of ecosystems (see, for example, refs 4–6).
Infectious agents are perceived to contribute negligible biomass to
ecosystems1–3. If so, it may be appropriate to set them aside from
investigations of energetics, ecosystems or food webs. However, some
parasites markedly influence host individuals (notably humans),
wildlife populations and sometimes host communities. These effects
imply a general role for infectious processes in the dynamics of ecosystems. Here we quantify the biomass of free-living organisms and
their parasites in three estuaries.
Over the course of five years we performed an extensive quantification of the free-living and infectious biomass in three estuaries in Baja
California (Bahia Falsa in Bahia San Quintı́n (BSQ) and Estero de
Punta Banda (EPB)) and California (Carpinteria Salt Marsh (CSM)).
Cumulatively, the study included 199 species of free-living animals,
15 species of free-living vascular plants and 138 species (including 1
plant species) of infectious agents (see Table 1). Unless specifically
mentioned, biomass refers to wet weight, including hard parts.
Here we consider the biomass of free-living and parasitic species
grouped by taxonomic categories and, for parasites, by life-history
strategy7,8. We also determined the proportion of the mass in each
host category that was parasite tissue. Additionally—because several
parasites in our study were parasitic castrators, usurping the phenotype of their hosts—we noted the biomass in each estuary of castrated
hosts (parasite extended phenotypes9). Trematode castrators in snail
intermediate hosts contributed the most substantial parasitic standing crop biomass in these estuaries, so we further estimated the rates
of annual productivity for this infectious component of the system
(asexual production of cercariae). To illustrate more sharply the
importance of parasite biomass, we compare it directly with the
biomass of free-living groups, particularly with that of the bird
Table 1 | Summary of free-living groups and animal parasite functional groups in this study, and number of hosts dissected
No. of parasite species
Free-living group
No. of species
No. of individuals
dissected
Macroparasites
Trophically
transmitted
Castrators
Pathogens
Sum
Miscellaneous phyla
Small arthropods
Polychaetes
Bivalves
Snails
Burrowing shrimps
Crabs
Fishes
Birds
Total host–parasite combinations
Total species, life stages or individuals
10
33
38
15
11
2
3
17
70
–
199
55
258
533
267
14,158
87
949
965
162
–
17,434
–
–
1
2
–
1
1
6
30
41
40
1
2
7
15
9
7
19
19
–
79
72
–
–
–
1
24
2
2
–
–
29
29
–
–
2
1
1
–
6
1
–
11
9
1
2
10
19
34
10
28
26
30
160
150
Totals for numbers of parasite species may be less than the sum of the rows because some parasite species use more than one host group. Italic numbers indicate species for which we did not
quantify biomass.
1
Department of Ecology, Evolution and Marine Biology and Marine Science Institute, University of California, Santa Barbara, California 93106, USA. 2Centro de Investigación y Estudios
Avanzados del IPN, C.P. 97310, Mérida, Mexico. 3Ecology and Evolutionary Biology, Princeton University, Princeton, New Jersey 08544-1003, USA. 4Center for Infectious Disease
Dynamics, Department of Biology, Pennsylvania State University, University Park, Pennsylvania 16802, USA. 5Department of Biology, University of Texas Pan-American, Edinburg,
Texas 78539, USA. 6Department of Biology, University of Wisconsin–Stevens Point, Stevens Point, Wisconsin 54481, USA. 7Pacific Islands Fisheries Research Center, National Marine
Fisheries Service, Honolulu, Hawaii 96822, USA. 8Department of Biology, University of California, Riverside, California 92521, USA. 9Ecology and Evolutionary Biology, University of
Connecticut, Storrs, 75 North Eagleville Rd. Unit 3043, Storrs, Connecticut 06269, USA. 10Smithsonian Tropical Research Institute, Apartado 0843, Ancon, Balboa 03092, Panama,
Republic of Panama. 11Western Ecological Research Center, US Geological Survey, Marine Science Institute, University of California, Santa Barbara, California 93106, USA.
*These authors contributed equally to this work.
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NATURE | Vol 454 | 24 July 2008
Figure 1 | Biomass of animals and proportional contribution of parasites in
three estuaries. a, Ecosystem-level biomass density of free-living animal
groups. b, Parasite tissue as a percentage of total biomasses. The arrow at the
bird icon in a marks the mean biomass of winter birds (4.1 kg ha21) across
the three estuaries. Error bars in a indicate upper 95% confidence limit. The
Supplementary Information contains the standard errors and degrees of
freedom for the stratified means, and confidence limits for this and all other
figures.
assemblage (an obvious and important component of the estuarine
ecosystem that includes most of the top predators10).
Vascular plants composed the greatest fraction of the biomass in
all three estuaries: a mean of 136,166 6 33,848 (95% confidence
limits) kg ha21 at BSQ, 61,754 6 14,512 kg ha21 at EPB, and
169,035 6 26,606 kg ha21 at CSM. At CSM, the parasitic dodder,
Cuscuta salina, infecting leaves and stems, was 0.27% of the plant
biomass. Dodder was less common at EPB and scarce at BSQ. We
recognized 199 species of free-living animals and 150 species (or life
stages) of metazoan parasites (Table 1).
Faunal composition was similar across these estuaries. As regards
the species that contribute the top 95% of all biomass, 28% of freeliving and 71% of parasite species were common to all three estuaries,
and 67% of free-living species and 74% of parasite species were
common to at least two estuaries. The biomasses of all free-living
Figure 2 | Ecosystem-level biomass density of animal parasites in three
estuaries. a, Parasites grouped by major taxon. b, Parasites grouped by
functional group. The reference arrow at the bird icon marks the mean
animals (including their infectious agents) were 925 kg ha21 at BSQ,
2,240 kg ha21 at EPB, and 2,594 kg ha21 at CSM. In the three estuaries, parasites composed 1.2%, 0.9% and 0.2% of the total animal
biomass, respectively. Additionally, parasite biomasses were 6.3%,
13.2% and 3.2% of the combined biomass of their free-living trophic
counterparts—that is, the main free-living groups that also feed on
multiple trophic levels, namely crabs, fishes, miscellaneous phyla and
birds.
For visual presentation, we combined free-living species into
broad taxonomic categories (Fig. 1a and Table 1). Our estimates
for free-living biomass compare with those from other estuaries
(see, for example, refs 11–13). The most substantial contributors to
animal biomass were the snails, bivalves and crabs. Across estuaries,
the biomasses of the broad categories were generally consistent, the
striking exception being the lack of bivalves at BSQ. Other biomass
differences between estuaries were driven to a large extent by differences in relative habitat areas (for example marsh habitat, which was
relatively extensive at CSM, supported fewer fishes and invertebrates). When all parasites were combined within the free-living
groups, the total mass of parasites was generally less than 2% of the
biomass of their host categories (Fig. 1b). However, the percentage of
parasite biomass varied between estuaries and sometimes reached
more than 3% of the mass of their free-living host groups.
The average parasite group had a biomass three orders of magnitude lower than that of the average free-living group (Fig. 2a).
Certain parasitic groups dominated the parasite biomass, reaching
levels similar to those of common free-living groups. For instance,
the biomass of trematode worms was comparable to that of the fishes,
burrowing shrimps, polychaetes or small arthropods. In all estuaries,
trematode biomass exceeded bird biomass by threefold to ninefold.
The epicaridean isopods were the second biggest biomass component
of the parasite groups (along with tapeworms at BSQ and EPB). As
with the free-living groups, biomass estimates for parasite groups
were similar for all estuaries, with exceptions being the small contribution of cestodes and parasitic copepods at CSM.
Parasitic castrators and trophically transmitted parasite stages
dominated parasite biomass, attaining 1–10 kg ha21 (Fig. 2b). This
mass density was comparable to—or exceeded—that of the vertebrate groups in these estuaries. Macroparasites contributed much less
to estuary biomass. This was partly due to the relatively low biomass
of their principal hosts (birds and fishes). The total biomasses of the
functional groups of parasites were also similar across estuaries.
A host infected with a parasitic castrator has the effective genotype
of the parasite14. Hence, the entire mass of each castrated host constitutes the extended phenotype9 of its parasitic castrator. For a host
group, the biomass of parasitically castrated hosts approached and
sometimes exceeded the biomass of their uninfected hosts (Fig. 3).
winter bird mass density across the three estuaries (4.1 kg ha21). Error bars
indicate upper 95% confidence limit.
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NATURE | Vol 454 | 24 July 2008
For example, across the three estuaries, parasitically castrated
Cerithidea californica commandeered 37–130% of the soft-tissue biomass compared to the uninfected snail populations (Fig. 4). Thus,
parasites effectively controlled much of the host biomass of some
free-living groups. This probably applies to the many other marine
and aquatic systems in which hosts for parasitic castrators (for
example crabs, shrimps and snails) are common.
The snail C. californica and its larval trematode parasitic castrators
were considerable components of animal biomass. C. californica had
the greatest biomass of any invertebrate in the two southern estuaries
(569 kg ha21 at BSQ, 854 kg ha21 at EPB) and ranked eighth among
the invertebrates at CSM (144 kg ha21). The larval parthenitae of 18
recognized trematode species parasitically castrated many of these
snails, including almost all of the largest individuals. The trematodes
average 22% of the total soft-tissue weight of individual infected
snails15. In total, the trematode biomass in C. californica matched
or exceeded the high winter biomass of birds and substantially
exceeded their summer biomass (Fig. 4).
We quantified the combined cercarial production of the 18 trematode species infecting C. californica snails. Because their snail hosts
were large and abundant, these cercariae comprised a substantial
component of parasite productivity. Cercariae are released from
snails in a daily pulse16 and have ephemeral life spans of about
24 h. The annual cercarial biomass produced by all C. californica
trematodes could therefore be compared with the standing crop
biomass of other (long-lived) animals. Annual production of cercariae was about threefold that of trematode parthenitae standingstock biomass and threefold to tenfold that of winter bird biomass
(Fig. 4). Further the annual production of cercariae exceeded 1.3–
2.2-fold the standing stock of all parasites combined. Reproductive
effort—the biomass of offspring (cercariae) produced in a year
divided by the biomass of parents (infected snail soft-tissue
mass)—was 0.53–0.86. This reproductive effort lies outside the range
of values (0.065–0.29) reported for 13 iteroparous marine mollusc
species17,18. Both parthenitae in C. californica and cercariae produced
by trematodes infecting C. californica had greater densities in the two
southern estuaries, primarily as a result of the abundance of C. californica throughout the vegetated marsh at BSQ and EPB, whereas at
CSM snails were rare in this extensive habitat (50–53% of all habitat
area at BSQ and EPB, and 77% of that at CSM).
Our conservative estimates (see Methods) indicate that parasite
biomass is comparable to that of several major groups of free-living
animals and greater than that of the principal top predators in these
estuaries. Parasite biomass was not equally distributed among host or
parasite groups; the parasitic castrator functional group comprised
most of the parasitic biomass. Consideration of the influence of their
Figure 3 | Ecosystem-level biomass density of parasitically castrated
(extended phenotypes) and uninfected phenotypes of hosts supporting
parasitic castrators in three estuaries. a, Bivalves. b, Snails. c, Burrowing
shrimps. d, Crabs. The reference arrow at the bird icon marks the mean
winter bird mass density across the three estuaries (4.1 kg ha21). Error bars
indicate upper 95% confidence limit.
extended phenotypes indicates a large ecological role for such parasites. Further, parasite biomass relative to the free-living biomass was
up to 6–12-fold the 0.1–0.2% ‘best guess’ used for an ecosystem
model of coral reefs that predicted a significant increase in trophic
efficiency when parasites were included in the model19.
Large standing-stock biomass is not the only indication of energetic importance to ecosystems: productivity is also fundamental4,5,20.
Parasites efficiently convert food to growth and reproduction, perhaps because they are released from the homeostatic, food gathering
and mobility tasks conducted by their hosts21. Thus, parasites—such
as larval trematodes in snails—may generally have substantial
biomass (like many macroorganisms) and high productivity (like
microbial organisms).
Additionally, parasites drain host energy beyond that which they
consume. Resistance to parasites can be energetically costly (as a
result of physiological and behavioural traits to detect, prevent and
respond to infection)22. In particular, immune systems require substantial standing investment and incur inductive energetic costs23,
and added to that are costs of repairing tissue damaged or consumed
by parasites. If parasites have relatively high productivity compared
with free-living consumers, and non-consumptive effects on their
resources, their effects at the ecosystem level could be disproportionately greater than suggested by their biomass.
This investigation of the biomass of parasites at the ecosystem level
fits with emerging interest in the role of parasites in food webs.
Parasites can significantly affect food-web topology (for example,
increasing chain length and connectance) and are commonly consumed24,25. Further, by modifying the behaviour of intermediate
hosts, parasites can selectively strengthen links between predator
and prey26. A quantification of biomass allows the assignment of mass
to these potentially important parasitic nodes and therefore represents a step towards fully dynamic food-web models that incorporate
infectious processes.
The substantial biomass and productivity attributed to parasites in
these estuaries calls for the full integration of parasite ecology into the
general body of ecological theory. Food-web analyses and ecosystem
Figure 4 | Standing crop biomass and cercarial productivity of trematodes
in Cerithidea californica snails. a, Ecosystem-level biomass density of host
and parasite tissues of parasitically castrated C. californica. b, Biomass
density of the free-swimming stages (cercariae) produced annually by
infected snails. Uninfected C. californica tissue biomass was 78.8 6 73.4
(95% confidence limits) kg ha21 at BSQ, 110.5 6 119.4 kg ha21 at EPB, and
11.8 6 9.0 kg ha21 at CSM. For clarity we do not include the snail shell mass,
which is about 80% of the total mass. The reference arrow at the bird icon
marks the mean winter bird-mass density across the three estuaries
(4.1 kg ha21). Summer bird biomass is 0.89 kg ha21 across the three
estuaries. Error bars indicate upper 95% confidence limit.
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LETTERS
NATURE | Vol 454 | 24 July 2008
modelling that include parasites19,24,25,27,28 provide a starting point for
this theoretical expansion.
12.
METHODS SUMMARY
We quantified animal and plant wet biomass by sampling 23 random sites in
each estuary, stratified over the four major habitats (vegetated marsh, pans,
channels, and mudflats and sandflats). At each site we sampled the density
and sizes of most free-living organisms more than 1 mm in body size: birds with
visual surveys, fishes with nets, benthos with quadrats and cores, and plants with
clip quadrats and cores. We estimated free-living animal biomass by applying
weight–length curves to the sampled individuals (for birds we used average adult
weight).
From each sample site we examined fishes and invertebrates for a wide range
of infectious agents, focusing on metazoans. We examined all soft-tissue types in
squash preparations. Ethical and pragmatic issues prevented extensive sampling
of most bird species for parasites, so we performed a partial estimation of parasite
communities of birds by using our own dissections and published information.
In general, our methodology probably underestimated the presence of infectious
disease (for example, by excluding many pathogens).
We estimated parasite biomass in our samples by multiplying species-specific
estimates of individual parasite mass by their abundance29 in individual hosts.
We obtained the masses of most metazoan parasites by directly weighing individuals, or by estimating their mass by multiplying an estimate of their volume
by a tissue density of 1.1 g ml21 (ref. 30). To generate estimates for the abundance of parasites in hosts (other than birds), we used statistical models based on
data from our dissected hosts.
We estimated the annual productivity of trematode cercariae by multiplying
species-specific estimates of individual cercaria mass by species-specific estimates of mean number of cercariae shed daily multiplied by infection density
multiplied by 365 days.
Received 3 January; accepted 2 April 2008.
1.
11.
13.
14.
15.
16.
17.
18.
19.
20.
21.
22.
23.
24.
25.
26.
27.
Loreau, M., Roy, J. & Tilman, D. in Parasitism and Ecosystems (eds Thomas, F.,
Renaud, F. & Guégan, J.-F.) 13–21 (Oxford Univ. Press, Oxford, 2005).
2. Polis, G. A. & Strong, D. R. Food web complexity and community dynamics.
Am. Nat. 147, 813–846 (1996).
3. Poulin, R. The functional importance of parasites in animal communities: many
roles at many levels? Int. J. Parasitol. 29, 903–914 (1999).
4. Linderman, R. L. The trophic–dynamic aspect of ecology. Ecology 23, 399–418
(1942).
5. Odum, E. P. Strategy of ecosystem development. Science 164, 262–270 (1969).
6. Yodzis, P. & Innes, S. Body size and consumer–resource dynamics. Am. Nat. 139,
1151–1175 (1992).
7. Kuris, A. M. & Lafferty, K. D. in Evolutionary Biology of Host–Parasite Relationships:
Theory Meets Reality (eds Poulin, R., Morand, S. & Skorping, A.) 9–26 (Elsevier,
Amsterdam, 2000).
8. Lafferty, K. D. & Kuris, A. M. Trophic strategies, animal diversity and body size.
Trends Ecol. Evol. 17, 507–513 (2002).
9. Dawkins, R. The Extended Phenotype: The Long Reach of the Gene (Oxford Univ.
Press, Oxford, 1982).
10. Erwin, R. M. Dependence of waterbirds and shorebirds on shallow-water habitats
in the mid-Atlantic coastal region: An ecological profile and management
recommendations. Estuaries 19, 213–219 (1996).
28.
29.
30.
Spruzen, F. L., Richardson, A. M. M. & Woehler, E. J. Spatial variation of intertidal
macroinvertebrates and environmental variables in Robbins Passage wetlands,
NW Tasmania. Hydrobiologia 598, 325–342 (2008).
Allen, L. G. Seasonal abundance composition and productivity of the littoral fish
assemblage in Upper Newport Bay, California. Fish. Bull. 80, 769–790 (1982).
Ramer, B. A., Page, G. W. & Yoklavich, M. M. Seasonal abundance habitat use and
diet of shorebirds in Elkhorn Slough, California. Western Birds 22, 157–174 (1991).
O’Brien, J. & Van Wyk, P. in Crustacean Issues: Factors in Adult Growth (ed. Wenner,
A.) 191–218 (Balkema, Rotterdam, 1985).
Hechinger, R. F. et al. How large is the hand in the puppet? Ecological and
evolutionary effects on body mass of 15 trematode parasitic castrators in their
snail host. Evol. Ecol.. doi:10.1007/s10682-008-9262-4 (in the press).
Fingerut, J. T., Zimmer, C. A. & Zimmer, R. K. Patterns and processes of larval
emergence in an estuarine parasite system. Biol. Bull. 205, 110–120 (2003).
Browne, R. A. & Russell-Hunter, W. D. Reproductive effort in molluscs. Oecologia
37, 23–27 (1978).
Hughes, R. N. & Roberts, D. J. Reproductive effort of winkles (Littorina spp.) with
contrasted methods of reproduction. Oecologia 47, 130–136 (1980).
Arias-Gonzalez, J. E. & Morand, S. Trophic functioning with parasites: a new
insight for ecosystem analysis. Mar. Ecol. Prog. Ser. 320, 43–53 (2006).
McLusky, D. S. The Estuarine Ecosystem 2nd edn (Blackie, Glasgow, 1989).
Calow, P. Pattern and paradox in parasite reproduction. Parasitology 86, 197–207
(1983).
Rigby, M. C., Hechinger, R. F. & Stevens, L. Why should parasite resistance be
costly? Trends Parasitol. 18, 116–120 (2002).
Lochmiller, R. L. & Deerenberg, C. Trade-offs in evolutionary immunology: just
what is the cost of immunity? Oikos 88, 87–98 (2000).
Lafferty, K. D., Dobson, A. P. & Kuris, A. M. Parasites dominate food web links.
Proc. Natl Acad. Sci. USA 103, 11211–11216 (2006).
Lafferty, K. D. et al. in Disease Ecology: Community Structure and Pathogen
Dynamics (eds Collinge, S. K. & Ray, C.) 119–134 (Oxford Univ. Press, Oxford,
2006).
Lafferty, K. D. & Morris, A. K. Altered behavior of parasitized killifish increases
susceptibility to predation by bird final hosts. Ecology 77, 1390–1397 (1996).
Huxham, M. & Raffaelli, D. Parasites and food-web patterns. J. Anim. Ecol. 64,
168–176 (1995).
Thompson, R. M., Mouritsen, K. N. & Poulin, R. Importance of parasites and their
life cycle characteristics in determining the structure of a large marine food web.
J. Anim. Ecol. 74, 77–85 (2005).
Bush, A. O., Lafferty, K. D., Lotz, J. M. & Shostak, A. W. Parasitology meets ecology
on its own terms: Margolis et al. revisited. J. Parasitol. 83, 575–583 (1997).
Peters, R. H. The Ecological Implications of Body Size (Cambridge Univ. Press,
Cambridge, 1983).
Supplementary Information is linked to the online version of the paper at
www.nature.com/nature.
Acknowledgements We thank many assistants, in particular I. Jimenez, A. Kaplan,
M. Saunders, J. Smith, A. Wood and the research team of L. Ladah. L. Ladah and the
Huttinger family provided facilities for fieldwork. Satellite imagery of CSM was
provided by K. Clarke. The University of California Natural Reserve System
provided access to CSM. The National Science Foundation/National Institutes of
Health Ecology of Infectious Diseases Program provided funding.
Author Information Reprints and permissions information is available at
www.nature.com/reprints. Correspondence and requests for materials should be
addressed to A.M.K. (kuris@lifesci.ucsb.edu).
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SUPPLEMENTARY INFORMATION
METHODS
The three estuaries were spread over 600 km of coastline and total areas were 144 ha for
BSQ, 707 ha for EPB, and 61 ha for CSM (these areas exclude lagoonal portions of BSQ
and EPB). We delineated habitats and calculated their areas using satellite imagery and
ArcGIS software (ESRI 1996). We used IKONOS satellite imagery with 1:4,800 map
accuracy and 8-bits per pixel (1 meter color product) for BSQ, and (1 meter + 4 meter
multispectral product) for EPB, purchased from GeoEye (formerly Space Imaging). The
image area for both wetlands was 100 km2. Satellite imagery was projected in UTM with
WGS84 datum. To georeference the satellite imagery of BSQ, we collected ground
control points using Garmin handheld GPS units and ArcPad, and ERDAS Imagine
software. We georectified the image of CSM from State plane projection in NAD27
datum to UTM projection in WGS84 datum using ERDAS Imagine software.
At each of the 69 randomly selected sites, we sampled the density and sizes of most
organisms over 1 mm in body size. We sampled birds using multiple, timed (15 min),
visual daytime surveys within a 200 m diameter area, walking a 50 meter-radius circular
transect at each sampling site. To capture daily, tidal, and seasonal variation in bird
abundance, we sampled each site six times in winter (December-January) and four times
in summer (June-July). We quantified fishes at mid-tide levels using 3 mm mesh
blocking nets to enclose an area followed by five sweeps with seines (the last performed
with the blocking nets). We used the blocking nets to enclose a 10 meter stretch of
channel, on flats we enclosed a similarly sized area. We seined the entire area of pans.
Also, we sampled the benthos at each site over a plot with the maximum dimensions of
10 x 10 m (sometimes limited by channel or pan size). We randomly sampled epibenthic
invertebrates during low tidal levels with ~20 10 x 50 cm quadrats, and infaunal
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invertebrates with 5-20 large cores (10 cm diameter x 50 cm deep) sieved through a 5
mm mesh and 5 or more composited small cores (5 cm diameter x 5 cm deep) sieved
through a 1 mm mesh. Within a site, for some large benthic animals, we sometimes
employed a stratified random sampling scheme31 to reduce variance in our estimates
when we could readily identify habitat from “non-habitat”. We sampled crabs by using
five random ‘cores’ (each being three adjacent 0.24m diameter cores), randomly placed
within the crab burrow habitat.
We generated the weight-length curves for the most common species, and applied
curves of related or similarly-shaped animals for others (for birds, we used published
records of average weight32,33).
For parasitological examinations, if a host species was numerous, we took a
random or haphazard sample, stratified across host body sizes as necessary. If species of
benthic invertebrates appeared to be important hosts, we usually haphazardly collected
additional individuals to increase sample sizes for dissections. For birds, we dissected 49
individuals of 20 species to estimate trematode, cestodes, and acanthocephalan biomass.
We improved our estimates for trematodes using data on 113 dissected individuals of 22
bird species from Russell34.
We used generalized linear models35, based on data from our dissected hosts, to
generate estimates for the abundance of parasites in the individual hosts in our density
samples. We used Poisson regression (with a log-link and an over-dispersion term) for
most cases, and logistic regression for parasites where presence-absence was the pertinent
datum (e.g., for larval trematode infections in molluscs). These models were applied to
every host-parasite combination in each estuary (except for birds, described below), and
the initial full model typically included host size, habitat (nested in estuary), site of
collection (nested within habitat), and, for crabs, sex (since this was apparent during field
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sampling of densities). We employed backwards elimination to remove main effects and
interactions that did not significantly contribute explanatory power (at p < 0.10). For bird
parasites, we estimated the mean proportional biomass across bird species (weighted by
sample size) of acanthocephalans, cestodes, and trematodes in individual birds, by
multiplying the mean no. worms per individual bird by individual worm mass. We then
multiplied this proportion by the total bird biomass in each estuary.
We estimated mean mass for most metazoan parasites either by directly weighing
individuals, or by conservatively estimating their mass by multiplying an estimate of their
volume by a tissue density of 1.1 g/mL30. Because parasitic castrators of crustaceans
grow in close proportion to host growth (e.g., r = 0.847), we estimated parasite to host
weight ratios for these groups and then multiplied this ratio by the mass of infected hosts.
It was difficult to separate larval trematode parthenitae from snail tissues, so we
determined the proportion of infected snails that was trematode tissue using serial crosssections15.
For the final estimate of parasite biomass density at the ecosystem level, we
calculated the same type of mean (stratified by habitat) that we employed for free-living
organisms.
For our estimate of annual productivity of trematode cercariae originating from
infected C. californica, species-specific cercarial mass was conservatively estimated by
multiplying estimates of their biovolumes (based on published and direct measurements
of their bodies and approximations to simple geometric shapes) by 1.1 g/cm2. Speciesspecific mean daily cercariae shed rates were based on measurements taken
approximately every two months over two years from individual snails placed in enclosed
vials during a tidal cycle in a CSM channel.
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doi: 10.1038/nature06970
SUPPLEMENTARY INFORMATION
For vascular plant biomass, 30, 0.05 m2 plots were randomly selected from the
vegetated marsh habitat of each estuary. Above ground vegetation was removed with
shears. At each plot, we took a core 0.008 m diameter by 0.5 m depth to sample the
below ground vegetation. Samples were rinsed, blotted dry and weighed. From these
samples, we calculated the summed wet weight of vascular plants (above plus below
ground). We present data on the parasitic plant, Cuscuta salina, separately.
We will make the dataset containing information at the sampling site level available
upon request.
31
Thompson, S.K., Sampling, 2nd ed. (Wiley, New York, 2002).
32
Poole, A. and Gill, F. eds., The birds of North America: life histories for the 21st
century. (American Ornithologists' Union/Academy of Natural Sciences of Philadelphia,
1992-2003).
33
Sibley, D.A., The Sibley field guide to birds of western North America. (Knopf, New
York, 2003).
34
Russell, H.T., Ph. D. thesis, University of California, 1960.
35
Myers, R.H., Montgomery, D.C., and Vining, G.G., Generalized linear models: with
applications in engineering and the sciences. (Wiley, New York, 2002).
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