Viral protease
Zhao, Y., Zhang, Q., Yang, H.T., Rao, Z.H.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Molecule | Chains | Sequence Length | Organism | Details | Image |
---|---|---|---|---|---|
3C-like proteinase | 305 | Severe acute respiratory syndrome coronavirus 2 | Mutation(s): 0  EC: 3.4.22.69 | ||
Find proteins for P0DTD1 (Severe acute respiratory syndrome coronavirus 2) Explore P0DTD1  Go to UniProtKB:  P0DTD1 | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0DTD1 | ||||
|
Ligands 3 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
HYR (Subject of Investigation/LOI) Query on HYR | B [auth A], C [auth A], D [auth A] | N-(2-phenoxyethyl)methanethioamide C9 H11 N O S GZNWNJDVFSIFLF-UHFFFAOYSA-N | |||
SO4 Query on SO4 | G [auth A], H [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L | |||
DMS Query on DMS | E [auth A], F [auth A] | DIMETHYL SULFOXIDE C2 H6 O S IAZDPXIOMUYVGZ-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 99.045 | α = 90 |
b = 80.681 | β = 114.89 |
c = 52.002 | γ = 90 |
Software Name | Purpose |
---|---|
XSCALE | data scaling |
PHENIX | refinement |
PDB_EXTRACT | data extraction |
PHASER | phasing |
XDS | data processing |