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Tnf tumor necrosis factor [ Chionomys nivalis (European snow vole) ]

Gene ID: 130862300, updated on 27-Mar-2024

Summary

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Gene symbol
Tnf
Gene description
tumor necrosis factor
Gene type
protein coding
RefSeq status
MODEL
Organism
Chionomys nivalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Arvicolinae; Chionomys
Orthologs
human mouse all
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Genomic context

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See Tnf in Genome Data Viewer
Location:
chromosome: 19
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_06 current mChiNiv1.1 (GCF_950005125.1) 19 NC_080104.1 (62311240..62313077, complement)

Chromosome 19 - NC_080104.1Genomic Context describing neighboring genes Neighboring gene leukocyte specific transcript 1 Neighboring gene lymphotoxin beta Neighboring gene lymphotoxin alpha Neighboring gene NFKB inhibitor like 1 Neighboring gene ATPase H+ transporting V1 subunit G2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_080104.1 Chromosome 19 Reference mChiNiv1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables CD40 receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cytokine activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tumor necrosis factor receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in extrinsic apoptotic signaling pathway via death domain receptors IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of NF-kappaB transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tumor necrosis factor-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tumor necrosis factor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_950005125.1-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mChiNiv1.1

Genomic

  1. NC_080104.1 Reference mChiNiv1.1

    Range
    62311240..62313077 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_057751853.1 → XP_057607836.1  tumor necrosis factor isoform X2

  2. XM_057751854.1 → XP_057607837.1  tumor necrosis factor isoform X3

  3. XM_057751852.1 → XP_057607835.1  tumor necrosis factor isoform X1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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